Wall clock time and date at job start Tue Mar 31 2020 05:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47831 * 2 1 4 4 C 1.53093 * 109.49154 * 239.97316 * 2 1 3 5 5 C 1.53184 * 109.15859 * 297.61794 * 4 2 1 6 6 C 1.52996 * 109.53937 * 183.15569 * 5 4 2 7 7 N 1.46901 * 109.47192 * 295.76674 * 6 5 4 8 8 C 1.46844 * 111.00142 * 169.63390 * 7 6 5 9 9 C 1.53046 * 109.52323 * 185.83877 * 8 7 6 10 10 C 1.53119 * 109.27899 * 300.82090 * 9 8 7 11 11 C 1.50691 * 109.57441 * 177.59152 * 10 9 8 12 12 H 1.08005 * 120.00180 * 240.28821 * 11 10 9 13 13 C 1.37876 * 120.00554 * 60.28398 * 11 10 9 14 14 N 1.31519 * 119.99620 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00378 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.46956 * 60.00118 * 15 13 11 17 17 H 1.48504 * 109.46810 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.46757 * 299.99853 * 15 13 11 19 19 C 1.53124 * 109.16056 * 57.65124 * 10 9 8 20 20 C 1.46851 * 111.00131 * 293.84401 * 7 6 5 21 21 C 1.53178 * 109.03634 * 303.01974 * 5 4 2 22 22 C 1.53095 * 109.16381 * 56.98227 * 21 5 4 23 23 H 1.08997 * 109.48030 * 62.37558 * 22 21 5 24 24 C 1.52998 * 109.48780 * 182.40206 * 22 21 5 25 25 O 1.42900 * 109.48232 * 120.01959 * 2 1 3 26 26 H 1.09001 * 109.47431 * 299.99750 * 1 2 3 27 27 H 1.08994 * 109.47273 * 60.00467 * 1 2 3 28 28 H 1.09003 * 109.46608 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.52179 * 57.51795 * 4 2 1 30 30 H 1.08992 * 109.52121 * 177.71664 * 4 2 1 31 31 H 1.08999 * 109.61710 * 62.93377 * 5 4 2 32 32 H 1.08996 * 109.47905 * 55.76733 * 6 5 4 33 33 H 1.09001 * 109.47495 * 175.77161 * 6 5 4 34 34 H 1.09001 * 109.46344 * 305.84973 * 8 7 6 35 35 H 1.09002 * 109.46304 * 65.82508 * 8 7 6 36 36 H 1.09002 * 109.50029 * 180.87501 * 9 8 7 37 37 H 1.08997 * 109.53114 * 60.77895 * 9 8 7 38 38 H 1.09006 * 109.52077 * 297.75073 * 10 9 8 39 39 H 0.96994 * 120.00163 * 179.97438 * 14 13 11 40 40 H 1.08995 * 109.50064 * 182.40370 * 19 10 9 41 41 H 1.09005 * 109.50085 * 62.28818 * 19 10 9 42 42 H 1.09000 * 109.46022 * 294.17904 * 20 7 6 43 43 H 1.09000 * 109.46297 * 54.15090 * 20 7 6 44 44 H 1.08999 * 109.52053 * 297.07406 * 21 5 4 45 45 H 1.08998 * 109.52365 * 176.88897 * 21 5 4 46 46 H 1.09003 * 109.46849 * 179.97438 * 24 22 21 47 47 H 1.09001 * 109.47475 * 299.95127 * 24 22 21 48 48 H 1.09004 * 109.47272 * 59.95199 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0409 -0.7222 -1.2495 5 6 1.5763 -2.1814 -1.2120 6 6 2.1476 -2.9314 -2.4169 7 7 1.5952 -2.3636 -3.6541 8 6 2.2984 -2.8859 -4.8326 9 6 1.7975 -2.1670 -6.0874 10 6 0.2892 -2.3897 -6.2295 11 6 -0.2215 -1.6359 -7.4302 12 1 -0.9733 -0.8702 -7.3074 13 6 0.2708 -1.9235 -8.6855 14 7 1.1867 -2.8554 -8.8350 15 14 -0.3619 -0.9885 -10.1738 16 1 -0.0843 0.4603 -10.0028 17 1 0.3212 -1.4831 -11.3961 18 1 -1.8258 -1.1999 -10.3055 19 6 -0.4149 -1.8812 -4.9684 20 6 0.1502 -2.6084 -3.7462 21 6 2.0770 -2.8321 0.0811 22 6 1.5648 -2.0283 1.2792 23 1 0.4753 -2.0551 1.2959 24 6 2.1099 -2.6369 2.5728 25 8 2.0066 -0.6740 1.1665 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.6423 -0.2358 -2.1398 30 1 3.1300 -0.6872 -1.2707 31 1 0.4873 -2.2196 -1.2415 32 1 3.2331 -2.8330 -2.4250 33 1 1.8789 -3.9856 -2.3495 34 1 3.3695 -2.7174 -4.7208 35 1 2.1068 -3.9550 -4.9257 36 1 2.3085 -2.5658 -6.9637 37 1 2.0012 -1.0997 -6.0017 38 1 0.0884 -3.4537 -6.3549 39 1 1.5328 -3.0581 -9.7181 40 1 -1.4845 -2.0759 -5.0453 41 1 -0.2460 -0.8094 -4.8644 42 1 -0.0313 -3.6787 -3.8443 43 1 -0.3390 -2.2383 -2.8452 44 1 3.1669 -2.8397 0.0867 45 1 1.7044 -3.8546 0.1424 46 1 1.7454 -2.0641 3.4256 47 1 1.7729 -3.6700 2.6586 48 1 3.1995 -2.6104 2.5558 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259999152.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:57 Heat of formation + Delta-G solvation = -71.565078 kcal Electronic energy + Delta-G solvation = -23578.599881 eV Core-core repulsion = 20439.088383 eV Total energy + Delta-G solvation = -3139.511499 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.10829 -38.15144 -34.96210 -33.41496 -33.05686 -31.14411 -29.88967 -29.42918 -26.66472 -26.47184 -24.42068 -22.78802 -22.29789 -21.62022 -20.38453 -19.22137 -18.54655 -16.41013 -16.33422 -15.96723 -15.51221 -14.96180 -14.65708 -14.40371 -14.14827 -13.73225 -13.40131 -13.04077 -12.83327 -12.79767 -12.54504 -12.38203 -12.08108 -12.06084 -11.84733 -11.74221 -11.67521 -11.28637 -11.04668 -10.92802 -10.77124 -10.67469 -10.51298 -10.41203 -10.18382 -9.95425 -9.92415 -9.42521 -9.35405 -8.89562 -8.69483 -8.27258 -7.70199 -5.95510 -4.00879 3.33664 3.38164 3.40986 3.71167 4.31960 4.46563 4.68770 4.78174 4.88208 4.88782 5.07878 5.16565 5.29324 5.33822 5.34874 5.44063 5.47413 5.51160 5.62243 5.72036 5.77279 5.79841 5.87931 5.92033 5.94262 5.96650 6.02238 6.10258 6.14035 6.21804 6.29559 6.34487 6.39251 6.49346 6.62433 6.65632 6.87652 7.10123 7.19276 7.26783 7.46651 7.64865 7.73406 7.85939 8.07300 8.18270 8.50371 9.02684 9.63371 11.10613 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.035402 B = 0.003568 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.736065 B = 7845.494998 C = 8208.126986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.085 3.915 3 H 0.099 0.901 4 C -0.132 4.132 5 C -0.085 4.085 6 C 0.060 3.940 7 N -0.532 5.532 8 C 0.058 3.942 9 C -0.103 4.103 10 C 0.049 3.951 11 C -0.511 4.511 12 H 0.053 0.947 13 C 0.061 3.939 14 N -0.893 5.893 15 Si 0.890 3.110 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.278 1.278 19 C -0.106 4.106 20 C 0.059 3.941 21 C -0.144 4.144 22 C 0.085 3.915 23 H 0.058 0.942 24 C -0.144 4.144 25 O -0.379 6.379 26 H 0.057 0.943 27 H 0.070 0.930 28 H 0.061 0.939 29 H 0.088 0.912 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.025 0.975 34 H 0.054 0.946 35 H 0.020 0.980 36 H 0.091 0.909 37 H 0.043 0.957 38 H 0.019 0.981 39 H 0.259 0.741 40 H 0.047 0.953 41 H 0.056 0.944 42 H 0.021 0.979 43 H 0.058 0.942 44 H 0.070 0.930 45 H 0.068 0.932 46 H 0.060 0.940 47 H 0.068 0.932 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.700 0.616 19.212 19.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.028 3.972 3 H 0.116 0.884 4 C -0.170 4.170 5 C -0.104 4.104 6 C -0.068 4.068 7 N -0.256 5.256 8 C -0.069 4.069 9 C -0.141 4.141 10 C 0.030 3.970 11 C -0.549 4.549 12 H 0.071 0.929 13 C -0.140 4.140 14 N -0.532 5.532 15 Si 0.718 3.282 16 H -0.203 1.203 17 H -0.214 1.214 18 H -0.204 1.204 19 C -0.143 4.143 20 C -0.069 4.069 21 C -0.183 4.183 22 C 0.027 3.973 23 H 0.076 0.924 24 C -0.201 4.201 25 O -0.299 6.299 26 H 0.076 0.924 27 H 0.089 0.911 28 H 0.079 0.921 29 H 0.107 0.893 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.043 0.957 34 H 0.072 0.928 35 H 0.039 0.961 36 H 0.109 0.891 37 H 0.061 0.939 38 H 0.037 0.963 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.074 0.926 42 H 0.039 0.961 43 H 0.076 0.924 44 H 0.089 0.911 45 H 0.086 0.914 46 H 0.079 0.921 47 H 0.087 0.913 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.003 1.113 19.201 19.337 hybrid contribution -0.585 -0.614 -1.163 1.440 sum 1.418 0.499 18.037 18.100 Atomic orbital electron populations 1.22441 0.96615 1.02619 1.02525 1.22229 0.93378 0.96251 0.85333 0.88365 1.22096 1.01308 0.95416 0.98174 1.21245 1.00567 0.95326 0.93274 1.22092 0.99260 0.95387 0.90073 1.61972 1.03632 1.58651 1.01385 1.22259 0.96635 0.96633 0.91391 1.21651 0.99680 0.98450 0.94366 1.18667 0.91378 0.96071 0.90870 1.21177 1.22186 1.19971 0.91549 0.92853 1.24969 0.95080 0.95151 0.98811 1.69868 1.28902 1.31516 1.22889 0.86700 0.78972 0.80301 0.82256 1.20302 1.21387 1.20401 1.21667 0.98312 0.99614 0.94743 1.22155 0.87973 0.97734 0.99040 1.22260 1.01899 0.99311 0.94782 1.22025 0.97916 0.82534 0.94832 0.92398 1.21762 1.02007 1.00156 0.96212 1.87937 1.73915 1.24377 1.43652 0.92391 0.91145 0.92054 0.89307 0.91619 0.90790 0.91394 0.95664 0.92776 0.96133 0.89059 0.93855 0.96284 0.93071 0.93394 0.92561 0.96092 0.92414 0.91149 0.91365 0.92099 0.91334 0.91931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.92 8.66 37.16 0.32 -1.60 16 2 C 0.09 0.96 3.91 -26.68 -0.10 0.86 16 3 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 4 C -0.13 -1.64 4.76 -26.59 -0.13 -1.77 16 5 C -0.09 -1.04 1.88 -90.44 -0.17 -1.21 16 6 C 0.06 0.86 4.37 -3.83 -0.02 0.84 16 7 N -0.53 -9.21 4.14 -234.67 -0.97 -10.18 16 8 C 0.06 1.14 5.46 -3.83 -0.02 1.12 16 9 C -0.10 -2.43 5.12 -26.65 -0.14 -2.57 16 10 C 0.05 1.21 2.16 -91.65 -0.20 1.01 16 11 C -0.51 -14.06 8.56 -34.44 -0.29 -14.36 16 12 H 0.05 1.45 7.74 -52.48 -0.41 1.05 16 13 C 0.06 1.68 5.31 -17.82 -0.09 1.59 16 14 N -0.89 -25.51 11.37 55.43 0.63 -24.88 16 15 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 C -0.11 -2.20 5.32 -26.65 -0.14 -2.35 16 20 C 0.06 1.04 5.30 -3.83 -0.02 1.02 16 21 C -0.14 -1.53 4.71 -26.59 -0.13 -1.65 16 22 C 0.08 0.88 2.94 -26.68 -0.08 0.80 16 23 H 0.06 0.59 6.34 -51.93 -0.33 0.26 16 24 C -0.14 -1.23 9.57 37.16 0.36 -0.87 16 25 O -0.38 -4.62 10.24 -35.23 -0.36 -4.98 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.06 0.64 4.98 -51.93 -0.26 0.39 16 29 H 0.09 1.24 7.83 -51.93 -0.41 0.83 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.07 0.94 4.76 -51.93 -0.25 0.69 16 32 H 0.07 0.95 7.98 -51.93 -0.41 0.53 16 33 H 0.03 0.36 8.12 -51.93 -0.42 -0.06 16 34 H 0.05 0.98 8.01 -51.93 -0.42 0.57 16 35 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.09 2.40 6.17 -51.93 -0.32 2.08 16 37 H 0.04 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 40 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.06 0.91 6.16 -51.93 -0.32 0.59 16 44 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 353.16 15.07 5.32 5.32 Total: -1.00 -28.13 353.16 -10.27 -38.40 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -9.02 Total: -0.89 kcal Atomic # 6 Polarization: -18.28 SS G_CDS: -0.85 Total: -19.13 kcal Atomic # 7 Polarization: -34.72 SS G_CDS: -0.34 Total: -35.06 kcal Atomic # 8 Polarization: -4.62 SS G_CDS: -0.36 Total: -4.98 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -28.13 -10.27 -38.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259999152.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.161 kcal (2) G-P(sol) polarization free energy of solvation -28.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds