Wall clock time and date at job start Tue Mar 31 2020 05:28:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09007 * 109.47845 * 2 1 4 4 C 1.53088 * 109.48225 * 120.01712 * 2 1 3 5 5 C 1.53182 * 109.16353 * 62.37639 * 4 2 1 6 6 C 1.52996 * 109.54459 * 176.84825 * 5 4 2 7 7 N 1.46901 * 109.47011 * 178.11988 * 6 5 4 8 8 C 1.46850 * 110.99759 * 183.77946 * 7 6 5 9 9 C 1.53046 * 109.51937 * 185.83848 * 8 7 6 10 10 C 1.53119 * 109.27819 * 300.82018 * 9 8 7 11 11 C 1.50694 * 109.52154 * 177.56001 * 10 9 8 12 12 H 1.08003 * 120.00337 * 0.13017 * 11 10 9 13 13 C 1.37879 * 120.00079 * 180.12732 * 11 10 9 14 14 N 1.31514 * 120.00015 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 120.00185 * 179.72563 * 13 11 10 16 16 H 1.48499 * 109.46751 * 0.02562 * 15 13 11 17 17 H 1.48499 * 109.47122 * 119.99951 * 15 13 11 18 18 H 1.48501 * 109.47241 * 240.00115 * 15 13 11 19 19 C 1.53116 * 109.21238 * 57.62343 * 10 9 8 20 20 C 1.46848 * 110.99897 * 307.99059 * 7 6 5 21 21 C 1.53184 * 109.10531 * 56.93629 * 5 4 2 22 22 C 1.53104 * 109.15628 * 303.15336 * 21 5 4 23 23 H 1.09001 * 109.40463 * 297.49414 * 22 21 5 24 24 C 1.52996 * 109.48057 * 177.50546 * 22 21 5 25 25 O 1.42900 * 109.48595 * 239.96470 * 2 1 3 26 26 H 1.08999 * 109.47568 * 299.97592 * 1 2 3 27 27 H 1.09000 * 109.47461 * 59.98061 * 1 2 3 28 28 H 1.09003 * 109.46959 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.52491 * 302.47042 * 4 2 1 30 30 H 1.09004 * 109.57736 * 182.31072 * 4 2 1 31 31 H 1.08994 * 109.54360 * 297.02525 * 5 4 2 32 32 H 1.08999 * 109.47510 * 58.11662 * 6 5 4 33 33 H 1.09002 * 109.47245 * 298.11529 * 6 5 4 34 34 H 1.08994 * 109.46266 * 65.82454 * 8 7 6 35 35 H 1.08993 * 109.46503 * 305.84982 * 8 7 6 36 36 H 1.08997 * 109.49724 * 180.88104 * 9 8 7 37 37 H 1.08994 * 109.50345 * 60.76294 * 9 8 7 38 38 H 1.09003 * 109.52285 * 297.68967 * 10 9 8 39 39 H 0.96998 * 120.00630 * 180.02562 * 14 13 11 40 40 H 1.09003 * 109.50408 * 62.31736 * 19 10 9 41 41 H 1.08996 * 109.50694 * 182.43317 * 19 10 9 42 42 H 1.09004 * 109.45872 * 294.17344 * 20 7 6 43 43 H 1.08991 * 109.46124 * 54.14206 * 20 7 6 44 44 H 1.08999 * 109.52275 * 62.97269 * 21 5 4 45 45 H 1.09001 * 109.51907 * 183.16221 * 21 5 4 46 46 H 1.09002 * 109.47183 * 299.96770 * 24 22 21 47 47 H 1.09003 * 109.47121 * 59.96671 * 24 22 21 48 48 H 1.09006 * 109.47179 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0405 -0.7220 1.2497 5 6 1.5757 -2.1811 1.2125 6 6 2.1468 -2.9310 2.4177 7 7 1.6637 -4.3182 2.4050 8 6 2.1195 -5.0451 3.5968 9 6 1.7229 -6.5187 3.4799 10 6 0.2012 -6.6235 3.3461 11 6 -0.1905 -8.0681 3.1705 12 1 0.5690 -8.8358 3.1577 13 6 -1.5185 -8.4096 3.0261 14 7 -2.4433 -7.4747 3.0412 15 14 -2.0034 -10.1995 2.8007 16 1 -0.7846 -11.0478 2.8134 17 1 -2.9041 -10.6114 3.9072 18 1 -2.7069 -10.3621 1.5031 19 6 -0.2540 -5.8180 2.1262 20 6 0.2011 -4.3651 2.2815 21 6 2.0748 -2.8335 -0.0805 22 6 1.5646 -2.0286 -1.2787 23 1 0.4750 -2.0552 -1.2954 24 6 2.1100 -2.6376 -2.5720 25 8 2.0066 -0.6743 -1.1663 26 1 -0.3634 0.5134 0.8902 27 1 -0.3634 0.5141 -0.8898 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6421 -0.2354 2.1399 30 1 3.1298 -0.6872 1.2722 31 1 0.4868 -2.2178 1.2428 32 1 1.8233 -2.4420 3.3366 33 1 3.2356 -2.9250 2.3668 34 1 1.6567 -4.6138 4.4844 35 1 3.2035 -4.9661 3.6779 36 1 2.0476 -7.0546 4.3717 37 1 2.1965 -6.9543 2.6002 38 1 -0.2718 -6.2243 4.2434 39 1 -3.3776 -7.7150 2.9400 40 1 0.1876 -6.2422 1.2244 41 1 -1.3408 -5.8538 2.0513 42 1 -0.2527 -3.9369 3.1753 43 1 -0.1080 -3.7921 1.4074 44 1 3.1647 -2.8426 -0.0868 45 1 1.7007 -3.8556 -0.1406 46 1 3.1996 -2.6113 -2.5547 47 1 1.7728 -3.6706 -2.6576 48 1 1.7463 -2.0646 -3.4250 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259999153.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:59 Heat of formation + Delta-G solvation = -69.229206 kcal Electronic energy + Delta-G solvation = -23759.993964 eV Core-core repulsion = 20620.583757 eV Total energy + Delta-G solvation = -3139.410208 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.12589 -38.16268 -34.96554 -33.40416 -32.99908 -31.10147 -29.79868 -29.48479 -26.64522 -26.48115 -24.48324 -22.66947 -22.33590 -21.65797 -20.30447 -19.18714 -18.50938 -16.44153 -16.31700 -15.95568 -15.44981 -15.12572 -14.51310 -14.36750 -14.15917 -13.62070 -13.49428 -13.08853 -12.76828 -12.66372 -12.57186 -12.32254 -12.13816 -12.00542 -11.81212 -11.68017 -11.62673 -11.32754 -11.03184 -10.95883 -10.71458 -10.63595 -10.47842 -10.35596 -10.18215 -9.96570 -9.92216 -9.41610 -9.29112 -8.93724 -8.64948 -8.28017 -7.69448 -5.96120 -4.01227 3.30793 3.38983 3.43209 3.75182 4.36531 4.46453 4.70931 4.73505 4.88247 4.94506 5.11964 5.25690 5.32032 5.33343 5.36400 5.44130 5.49176 5.62837 5.69765 5.76628 5.77332 5.80396 5.89831 5.93872 5.95097 6.02960 6.09181 6.13148 6.14045 6.20667 6.27616 6.33702 6.42952 6.49788 6.65557 6.66719 6.88252 7.10492 7.18972 7.30166 7.46359 7.64852 7.73425 7.85951 8.06932 8.18139 8.50262 9.02801 9.63190 11.10019 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.023112 B = 0.004065 C = 0.003864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.185920 B = 6886.370519 C = 7243.770673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.091 3.909 3 H 0.097 0.903 4 C -0.144 4.144 5 C -0.092 4.092 6 C 0.062 3.938 7 N -0.532 5.532 8 C 0.061 3.939 9 C -0.106 4.106 10 C 0.047 3.953 11 C -0.509 4.509 12 H 0.054 0.946 13 C 0.060 3.940 14 N -0.893 5.893 15 Si 0.888 3.112 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.285 1.285 19 C -0.103 4.103 20 C 0.053 3.947 21 C -0.132 4.132 22 C 0.080 3.920 23 H 0.058 0.942 24 C -0.143 4.143 25 O -0.379 6.379 26 H 0.065 0.935 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.024 0.976 33 H 0.067 0.933 34 H 0.022 0.978 35 H 0.056 0.944 36 H 0.048 0.952 37 H 0.056 0.944 38 H 0.019 0.981 39 H 0.258 0.742 40 H 0.042 0.958 41 H 0.091 0.909 42 H 0.019 0.981 43 H 0.059 0.941 44 H 0.066 0.934 45 H 0.088 0.912 46 H 0.060 0.940 47 H 0.072 0.928 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.547 14.280 -5.765 17.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.033 3.967 3 H 0.115 0.885 4 C -0.182 4.182 5 C -0.110 4.110 6 C -0.067 4.067 7 N -0.257 5.257 8 C -0.067 4.067 9 C -0.143 4.143 10 C 0.029 3.971 11 C -0.547 4.547 12 H 0.073 0.927 13 C -0.140 4.140 14 N -0.532 5.532 15 Si 0.717 3.283 16 H -0.198 1.198 17 H -0.212 1.212 18 H -0.211 1.211 19 C -0.142 4.142 20 C -0.074 4.074 21 C -0.170 4.170 22 C 0.023 3.977 23 H 0.076 0.924 24 C -0.200 4.200 25 O -0.299 6.299 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.096 0.904 32 H 0.042 0.958 33 H 0.085 0.915 34 H 0.040 0.960 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.075 0.925 38 H 0.037 0.963 39 H 0.068 0.932 40 H 0.061 0.939 41 H 0.109 0.891 42 H 0.037 0.963 43 H 0.077 0.923 44 H 0.084 0.916 45 H 0.106 0.894 46 H 0.080 0.920 47 H 0.091 0.909 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.673 14.135 -6.323 17.281 hybrid contribution -0.899 -0.619 0.946 1.444 sum 6.774 13.516 -5.377 16.046 Atomic orbital electron populations 1.22471 0.96566 1.03088 1.02395 1.22075 0.93364 0.95974 0.85312 0.88517 1.22218 1.01670 0.96177 0.98134 1.21348 1.00906 0.93392 0.95357 1.22090 0.99553 0.89255 0.95772 1.62027 1.12414 1.11510 1.39719 1.22096 0.98208 0.96395 0.89983 1.21667 1.00152 0.92213 1.00309 1.18683 0.88977 0.95290 0.94171 1.21260 0.92024 0.92452 1.48961 0.92733 1.24964 0.96698 0.97027 0.95318 1.69884 1.00445 1.31886 1.50993 0.86593 0.78488 0.85627 0.77627 1.19829 1.21168 1.21080 1.21653 1.02892 0.90144 0.99468 1.22354 0.85842 1.00595 0.98628 1.22138 1.01432 1.00489 0.92913 1.22169 0.98052 0.81888 0.95624 0.92372 1.21747 1.01848 1.00535 0.95881 1.87933 1.73879 1.25040 1.43017 0.91636 0.92069 0.91561 0.91258 0.91185 0.90381 0.95761 0.91487 0.95988 0.92597 0.93311 0.92509 0.96282 0.93202 0.93919 0.89051 0.96289 0.92269 0.91556 0.89377 0.92044 0.90888 0.92338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.88 8.65 37.15 0.32 -1.56 16 2 C 0.09 0.96 3.91 -26.69 -0.10 0.86 16 3 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 4 C -0.14 -1.55 4.93 -26.59 -0.13 -1.68 16 5 C -0.09 -1.17 1.47 -90.43 -0.13 -1.30 16 6 C 0.06 0.88 4.55 -3.83 -0.02 0.86 16 7 N -0.53 -9.26 4.17 -234.67 -0.98 -10.23 16 8 C 0.06 1.10 5.46 -3.83 -0.02 1.08 16 9 C -0.11 -2.23 5.32 -26.65 -0.14 -2.37 16 10 C 0.05 1.18 2.16 -91.65 -0.20 0.98 16 11 C -0.51 -14.00 8.56 -34.44 -0.29 -14.29 16 12 H 0.05 1.49 7.74 -52.48 -0.41 1.09 16 13 C 0.06 1.67 5.31 -17.82 -0.09 1.58 16 14 N -0.89 -25.41 11.36 55.43 0.63 -24.78 16 15 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 16 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 17 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 19 C -0.10 -2.42 5.12 -26.65 -0.14 -2.55 16 20 C 0.05 1.02 5.01 -3.83 -0.02 1.00 16 21 C -0.13 -1.72 4.47 -26.58 -0.12 -1.84 16 22 C 0.08 0.97 2.93 -26.68 -0.08 0.89 16 23 H 0.06 0.71 6.34 -51.93 -0.33 0.39 16 24 C -0.14 -1.54 9.56 37.16 0.36 -1.19 16 25 O -0.38 -4.79 10.24 -35.23 -0.36 -5.15 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.74 4.98 -51.93 -0.26 0.48 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.08 1.07 4.55 -51.93 -0.24 0.84 16 32 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.90 8.12 -51.93 -0.42 0.48 16 36 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 40 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.09 2.39 6.16 -51.93 -0.32 2.07 16 42 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.06 1.05 5.68 -51.93 -0.29 0.75 16 44 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 45 H 0.09 1.30 7.68 -51.93 -0.40 0.90 16 46 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 48 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 352.03 15.07 5.31 5.31 Total: -1.00 -28.13 352.03 -10.22 -38.35 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -8.99 Total: -0.26 kcal Atomic # 6 Polarization: -18.72 SS G_CDS: -0.81 Total: -19.53 kcal Atomic # 7 Polarization: -34.66 SS G_CDS: -0.35 Total: -35.01 kcal Atomic # 8 Polarization: -4.79 SS G_CDS: -0.36 Total: -5.15 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -28.13 -10.22 -38.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259999153.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.875 kcal (2) G-P(sol) polarization free energy of solvation -28.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds