Wall clock time and date at job start Tue Mar 31 2020 05:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.48542 * 2 1 4 4 C 1.53091 * 109.48288 * 120.03173 * 2 1 3 5 5 C 1.53176 * 109.15949 * 62.37630 * 4 2 1 6 6 H 1.09001 * 109.54593 * 297.01953 * 5 4 2 7 7 C 1.53004 * 109.54017 * 176.84707 * 5 4 2 8 8 N 1.46894 * 109.47197 * 65.15028 * 7 5 4 9 9 C 1.46851 * 111.00182 * 196.06528 * 8 7 5 10 10 C 1.53039 * 109.51544 * 174.16282 * 9 8 7 11 11 C 1.53097 * 109.29058 * 59.18550 * 10 9 8 12 12 C 1.52994 * 109.57632 * 182.40303 * 11 10 9 13 13 C 1.50699 * 109.47306 * 294.70649 * 12 11 10 14 14 H 1.08003 * 119.99944 * 0.02562 * 13 12 11 15 15 C 1.37879 * 120.00355 * 180.02562 * 13 12 11 16 16 N 1.31512 * 120.00242 * 180.02562 * 15 13 12 17 17 Si 1.86802 * 119.99775 * 0.02562 * 15 13 12 18 18 H 1.48497 * 109.46908 * 89.99764 * 17 15 13 19 19 H 1.48494 * 109.47207 * 209.99854 * 17 15 13 20 20 H 1.48502 * 109.47035 * 330.00208 * 17 15 13 21 21 C 1.53118 * 109.15226 * 302.33895 * 11 10 9 22 22 C 1.46852 * 111.00253 * 71.85193 * 8 7 5 23 23 C 1.53174 * 109.04014 * 56.97980 * 5 4 2 24 24 C 1.53092 * 109.16171 * 303.01925 * 23 5 4 25 25 O 1.42903 * 109.48071 * 239.97992 * 2 1 3 26 26 H 1.08999 * 109.47303 * 299.96795 * 1 2 3 27 27 H 1.09001 * 109.47553 * 59.96497 * 1 2 3 28 28 H 1.08999 * 109.46986 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.52200 * 302.46976 * 4 2 1 30 30 H 1.08998 * 109.57484 * 182.30994 * 4 2 1 31 31 H 1.09000 * 109.47016 * 305.14560 * 7 5 4 32 32 H 1.08998 * 109.46913 * 185.14882 * 7 5 4 33 33 H 1.08991 * 109.46288 * 294.17810 * 9 8 7 34 34 H 1.09002 * 109.45544 * 54.15222 * 9 8 7 35 35 H 1.08998 * 109.50367 * 179.11706 * 10 9 8 36 36 H 1.09002 * 109.50136 * 299.23418 * 10 9 8 37 37 H 1.09006 * 109.52254 * 62.23590 * 11 10 9 38 38 H 1.09001 * 109.47281 * 54.71493 * 12 11 10 39 39 H 1.09007 * 109.46762 * 174.70985 * 12 11 10 40 40 H 0.96998 * 120.00469 * 180.02562 * 16 15 13 41 41 H 1.08998 * 109.50478 * 297.70571 * 21 11 10 42 42 H 1.09002 * 109.53074 * 177.61474 * 21 11 10 43 43 H 1.08994 * 109.46428 * 305.85894 * 22 8 7 44 44 H 1.09005 * 109.45950 * 65.83907 * 22 8 7 45 45 H 1.09003 * 109.52433 * 62.92265 * 23 5 4 46 46 H 1.08997 * 109.52729 * 183.10893 * 23 5 4 47 47 H 1.08997 * 109.48261 * 297.61964 * 24 23 5 48 48 H 1.09002 * 109.48856 * 177.59388 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0406 -0.7223 1.2495 5 6 1.5758 -2.1814 1.2119 6 1 0.4868 -2.2181 1.2422 7 6 2.1469 -2.9316 2.4169 8 7 1.5777 -2.3782 3.6529 9 6 2.3612 -2.7914 4.8242 10 6 1.8289 -2.0821 6.0715 11 6 0.3541 -2.4430 6.2678 12 6 -0.2010 -1.6904 7.4787 13 6 0.4893 -2.1715 8.7289 14 1 1.2484 -2.9372 8.6661 15 6 0.1519 -1.6342 9.9530 16 7 0.7546 -2.0537 11.0440 17 14 -1.1615 -0.3103 10.0619 18 1 -2.4900 -0.9456 10.2532 19 1 -0.8698 0.5830 11.2116 20 1 -1.1688 0.4841 8.8072 21 6 -0.4313 -2.0464 5.0147 22 6 0.1662 -2.7566 3.7979 23 6 2.0765 -2.8322 -0.0811 24 6 1.5645 -2.0283 -1.2792 25 8 2.0065 -0.6740 -1.1665 26 1 -0.3634 0.5133 0.8903 27 1 -0.3634 0.5144 -0.8897 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6421 -0.2359 2.1398 30 1 3.1298 -0.6875 1.2720 31 1 3.2310 -2.8197 2.4341 32 1 1.8919 -3.9886 2.3410 33 1 2.2764 -3.8700 4.9557 34 1 3.4074 -2.5251 4.6735 35 1 2.4005 -2.4008 6.9431 36 1 1.9262 -1.0037 5.9462 37 1 0.2605 -3.5166 6.4318 38 1 -0.0247 -0.6219 7.3545 39 1 -1.2722 -1.8747 7.5612 40 1 0.5170 -1.6760 11.9053 41 1 -0.3696 -0.9674 4.8729 42 1 -1.4748 -2.3391 5.1308 43 1 -0.3818 -2.4653 2.9019 44 1 0.0917 -3.8355 3.9345 45 1 3.1664 -2.8399 -0.0867 46 1 1.7038 -3.8546 -0.1424 47 1 0.4750 -2.0549 -1.2960 48 1 1.9529 -2.4619 -2.2008 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260075194.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:10 Heat of formation + Delta-G solvation = -74.082364 kcal Electronic energy + Delta-G solvation = -23270.715402 eV Core-core repulsion = 20131.094746 eV Total energy + Delta-G solvation = -3139.620656 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.15214 -38.65354 -35.46957 -33.47242 -32.38739 -32.01089 -30.43636 -29.16433 -27.91060 -25.88341 -23.95718 -23.29365 -22.56318 -21.57800 -20.38058 -19.31020 -18.98405 -16.72035 -16.52266 -16.16678 -15.83537 -15.16873 -14.71106 -14.55863 -14.28852 -13.90945 -13.72850 -13.59881 -13.13099 -13.00356 -12.71005 -12.59212 -12.33034 -12.10858 -11.97536 -11.81306 -11.59581 -11.39499 -11.31434 -11.05271 -10.87828 -10.73587 -10.57773 -10.53627 -10.17645 -10.08033 -9.70848 -9.60726 -9.56596 -9.22815 -8.98210 -8.50265 -8.10129 -6.01225 -3.98083 3.32443 3.40083 3.44386 3.69133 3.99490 4.48166 4.52050 4.65139 4.71879 4.80636 4.94260 5.13502 5.14428 5.19304 5.31295 5.31917 5.32923 5.37680 5.42495 5.52701 5.55897 5.62329 5.68404 5.70959 5.74660 5.81238 5.85425 5.92256 5.94859 6.04984 6.08554 6.16994 6.18633 6.29348 6.36139 6.50098 6.58035 6.86973 6.96908 7.05756 7.07605 7.27611 7.31193 7.38864 7.53268 7.84315 8.58015 9.03983 9.62157 11.12253 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.031424 B = 0.003426 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.818624 B = 8171.986126 C = 8606.252932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.083 3.917 3 H 0.099 0.901 4 C -0.133 4.133 5 C -0.084 4.084 6 H 0.074 0.926 7 C 0.060 3.940 8 N -0.534 5.534 9 C 0.057 3.943 10 C -0.100 4.100 11 C -0.073 4.073 12 C -0.008 4.008 13 C -0.514 4.514 14 H 0.072 0.928 15 C 0.065 3.935 16 N -0.906 5.906 17 Si 0.878 3.122 18 H -0.279 1.279 19 H -0.289 1.289 20 H -0.265 1.265 21 C -0.114 4.114 22 C 0.059 3.941 23 C -0.151 4.151 24 C 0.059 3.941 25 O -0.381 6.381 26 H 0.069 0.931 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.087 0.913 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.030 0.970 33 H 0.027 0.973 34 H 0.066 0.934 35 H 0.077 0.923 36 H 0.062 0.938 37 H 0.056 0.944 38 H 0.016 0.984 39 H 0.009 0.991 40 H 0.262 0.738 41 H 0.064 0.936 42 H 0.058 0.942 43 H 0.065 0.935 44 H 0.027 0.973 45 H 0.070 0.930 46 H 0.069 0.931 47 H 0.051 0.949 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.947 0.241 -24.031 24.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.026 3.974 3 H 0.117 0.883 4 C -0.171 4.171 5 C -0.103 4.103 6 H 0.092 0.908 7 C -0.068 4.068 8 N -0.258 5.258 9 C -0.071 4.071 10 C -0.138 4.138 11 C -0.091 4.091 12 C -0.046 4.046 13 C -0.552 4.552 14 H 0.090 0.910 15 C -0.136 4.136 16 N -0.545 5.545 17 Si 0.706 3.294 18 H -0.205 1.205 19 H -0.215 1.215 20 H -0.190 1.190 21 C -0.152 4.152 22 C -0.069 4.069 23 C -0.189 4.189 24 C -0.017 4.017 25 O -0.300 6.300 26 H 0.088 0.912 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.106 0.894 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.048 0.952 33 H 0.045 0.955 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.034 0.966 39 H 0.027 0.973 40 H 0.071 0.929 41 H 0.083 0.917 42 H 0.077 0.923 43 H 0.083 0.917 44 H 0.045 0.955 45 H 0.089 0.911 46 H 0.088 0.912 47 H 0.069 0.931 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.098 0.864 -23.989 24.030 hybrid contribution -0.919 -0.455 0.568 1.172 sum 0.179 0.409 -23.421 23.425 Atomic orbital electron populations 1.22436 0.96539 1.02625 1.02602 1.22249 0.93423 0.96380 0.85362 0.88307 1.22103 1.01349 0.95368 0.98245 1.21213 1.00550 0.95326 0.93210 0.90799 1.22111 0.99276 0.95697 0.89700 1.61908 1.02443 1.59731 1.01754 1.22190 0.96758 0.97359 0.90754 1.21539 0.96711 1.00246 0.95272 1.21038 0.94185 0.99825 0.94072 1.19604 0.95674 0.95687 0.93607 1.21161 1.21889 1.22347 0.89782 0.90998 1.25034 0.96190 0.96567 0.95807 1.69914 1.42756 1.43543 0.98332 0.86799 0.82372 0.82467 0.77770 1.20456 1.21511 1.18995 1.21717 0.98608 1.00615 0.94241 1.22114 0.88728 0.97316 0.98748 1.22224 1.02002 0.99466 0.95247 1.22519 0.98660 0.82561 0.98003 1.87964 1.73800 1.24601 1.43667 0.91194 0.92290 0.92020 0.89411 0.91565 0.91106 0.95168 0.95466 0.91558 0.90466 0.91947 0.92548 0.96579 0.97290 0.92857 0.91691 0.92298 0.91670 0.95470 0.91083 0.91236 0.93070 0.89296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.61 8.65 37.16 0.32 -1.29 16 2 C 0.08 0.80 3.91 -26.69 -0.10 0.70 16 3 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 4 C -0.13 -1.36 4.77 -26.59 -0.13 -1.48 16 5 C -0.08 -0.82 1.98 -90.44 -0.18 -1.00 16 6 H 0.07 0.75 4.98 -51.93 -0.26 0.49 16 7 C 0.06 0.67 4.38 -3.82 -0.02 0.65 16 8 N -0.53 -7.17 4.14 -234.67 -0.97 -8.15 16 9 C 0.06 0.85 5.44 -3.83 -0.02 0.83 16 10 C -0.10 -1.83 5.15 -26.66 -0.14 -1.97 16 11 C -0.07 -1.41 2.20 -90.51 -0.20 -1.61 16 12 C -0.01 -0.20 3.52 -27.89 -0.10 -0.30 16 13 C -0.51 -14.46 9.00 -34.44 -0.31 -14.77 16 14 H 0.07 2.17 7.32 -52.48 -0.38 1.78 16 15 C 0.06 1.88 5.47 -17.82 -0.10 1.79 16 16 N -0.91 -28.00 13.96 55.43 0.77 -27.23 16 17 Si 0.88 21.88 27.47 -169.99 -4.67 17.21 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 20 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 21 C -0.11 -1.84 5.38 -26.65 -0.14 -1.98 16 22 C 0.06 0.80 5.30 -3.83 -0.02 0.78 16 23 C -0.15 -1.28 5.42 -26.59 -0.14 -1.42 16 24 C 0.06 0.50 6.51 37.21 0.24 0.75 16 25 O -0.38 -4.08 10.60 -35.23 -0.37 -4.46 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.53 4.98 -51.93 -0.26 0.27 16 29 H 0.09 1.00 7.86 -51.93 -0.41 0.60 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.78 7.87 -51.93 -0.41 0.37 16 32 H 0.03 0.34 8.05 -51.93 -0.42 -0.08 16 33 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.92 7.96 -51.93 -0.41 0.50 16 35 H 0.08 1.57 7.05 -51.93 -0.37 1.21 16 36 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 37 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 39 H 0.01 0.21 7.57 -51.92 -0.39 -0.18 16 40 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 41 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.06 0.79 6.42 -51.93 -0.33 0.46 16 44 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.05 0.41 6.34 -51.93 -0.33 0.08 16 48 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 351.77 15.07 5.30 5.30 Total: -1.00 -30.02 351.77 -9.98 -40.00 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -9.01 Total: -2.36 kcal Atomic # 6 Polarization: -19.29 SS G_CDS: -1.03 Total: -20.32 kcal Atomic # 7 Polarization: -35.17 SS G_CDS: -0.20 Total: -35.37 kcal Atomic # 8 Polarization: -4.08 SS G_CDS: -0.37 Total: -4.46 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.67 Total: 17.21 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.02 -9.98 -40.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260075194.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.082 kcal (2) G-P(sol) polarization free energy of solvation -30.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds