Wall clock time and date at job start Tue Mar 31 2020 05:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.48881 * 2 1 4 4 C 1.53089 * 109.47797 * 239.97417 * 2 1 3 5 5 C 1.53177 * 109.16673 * 297.62218 * 4 2 1 6 6 H 1.09003 * 109.54077 * 62.89045 * 5 4 2 7 7 C 1.52996 * 109.54288 * 183.15370 * 5 4 2 8 8 N 1.46902 * 109.47005 * 184.43526 * 7 5 4 9 9 C 1.46845 * 111.00041 * 199.97666 * 8 7 5 10 10 C 1.53042 * 109.52018 * 174.15990 * 9 8 7 11 11 C 1.53121 * 109.28040 * 59.18451 * 10 9 8 12 12 C 1.52992 * 109.52373 * 182.44099 * 11 10 9 13 13 C 1.50706 * 109.46953 * 294.67985 * 12 11 10 14 14 H 1.07996 * 119.99812 * 0.02562 * 13 12 11 15 15 C 1.37882 * 119.99845 * 179.97438 * 13 12 11 16 16 N 1.31513 * 120.00238 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 119.99725 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47244 * 60.00732 * 17 15 13 19 19 H 1.48502 * 109.47414 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.47601 * 300.00287 * 17 15 13 21 21 C 1.53121 * 109.15757 * 302.34248 * 11 10 9 22 22 C 1.46852 * 111.00136 * 75.76736 * 8 7 5 23 23 C 1.53178 * 109.03667 * 303.02311 * 5 4 2 24 24 C 1.53087 * 109.16245 * 56.97522 * 23 5 4 25 25 O 1.42900 * 109.41983 * 302.39262 * 24 23 5 26 26 H 1.09007 * 109.47323 * 299.96351 * 1 2 3 27 27 H 1.08998 * 109.47506 * 59.96680 * 1 2 3 28 28 H 1.09003 * 109.46999 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.52230 * 177.71860 * 4 2 1 30 30 H 1.09005 * 109.57366 * 57.56192 * 4 2 1 31 31 H 1.09000 * 109.47216 * 304.43257 * 7 5 4 32 32 H 1.08999 * 109.47469 * 64.43762 * 7 5 4 33 33 H 1.08999 * 109.46644 * 294.17684 * 9 8 7 34 34 H 1.08997 * 109.45981 * 54.14747 * 9 8 7 35 35 H 1.09000 * 109.50428 * 299.23956 * 10 9 8 36 36 H 1.09004 * 109.50296 * 179.12332 * 10 9 8 37 37 H 1.08997 * 109.51814 * 62.24542 * 11 10 9 38 38 H 1.08997 * 109.47510 * 54.67590 * 12 11 10 39 39 H 1.09002 * 109.47180 * 174.68179 * 12 11 10 40 40 H 0.96999 * 119.99810 * 180.02562 * 16 15 13 41 41 H 1.08998 * 109.50591 * 297.71456 * 21 11 10 42 42 H 1.08997 * 109.49979 * 177.59563 * 21 11 10 43 43 H 1.08999 * 109.46321 * 305.86199 * 22 8 7 44 44 H 1.09003 * 109.45907 * 65.83277 * 22 8 7 45 45 H 1.09003 * 109.52010 * 297.07385 * 23 5 4 46 46 H 1.08991 * 109.51859 * 176.88559 * 23 5 4 47 47 H 1.08995 * 109.47977 * 182.40960 * 24 23 5 48 48 H 1.09004 * 109.49217 * 62.38496 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0404 -0.7222 -1.2496 5 6 1.5757 -2.1813 -1.2123 6 1 0.4867 -2.2179 -1.2409 7 6 2.1467 -2.9313 -2.4174 8 7 1.6153 -4.3007 -2.4386 9 6 2.4610 -5.1807 -3.2551 10 6 1.9624 -6.6228 -3.1369 11 6 0.5088 -6.6958 -3.6125 12 6 -0.0147 -8.1229 -3.4397 13 6 0.7433 -9.0502 -4.3544 14 1 1.5209 -8.6606 -4.9946 15 6 0.4447 -10.3962 -4.3731 16 7 -0.5019 -10.8707 -3.5932 17 14 1.3838 -11.5454 -5.5074 18 1 2.8291 -11.5034 -5.1687 19 1 0.8759 -12.9308 -5.3397 20 1 1.1928 -11.1159 -6.9161 21 6 -0.3419 -5.7342 -2.7780 22 6 0.2235 -4.3179 -2.9066 23 6 2.0765 -2.8322 0.0807 24 6 1.5646 -2.0285 1.2789 25 8 2.0066 -0.6743 1.1663 26 1 -0.3634 0.5133 0.8904 27 1 -0.3634 0.5143 -0.8896 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1297 -0.6873 -1.2710 30 1 1.6428 -0.2359 -2.1405 31 1 1.8608 -2.4164 -3.3346 32 1 3.2337 -2.9645 -2.3430 33 1 2.4145 -4.8646 -4.2972 34 1 3.4912 -5.1227 -2.9038 35 1 2.0216 -6.9442 -2.0970 36 1 2.5807 -7.2735 -3.7553 37 1 0.4548 -6.4116 -4.6634 38 1 0.1247 -8.4384 -2.4058 39 1 -1.0754 -8.1535 -3.6890 40 1 -0.7117 -11.8177 -3.6062 41 1 -0.3189 -6.0416 -1.7326 42 1 -1.3698 -5.7499 -3.1401 43 1 -0.3714 -3.6331 -2.3023 44 1 0.1875 -4.0060 -3.9504 45 1 3.1665 -2.8399 0.0862 46 1 1.7037 -3.8546 0.1418 47 1 1.9532 -2.4623 2.2002 48 1 0.4750 -2.0551 1.2960 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260075200.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:13 Heat of formation + Delta-G solvation = -77.841374 kcal Electronic energy + Delta-G solvation = -23136.221536 eV Core-core repulsion = 19996.437877 eV Total energy + Delta-G solvation = -3139.783659 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.11302 -38.59431 -35.38169 -33.48753 -32.40389 -31.83886 -30.37145 -28.94818 -27.78506 -25.63454 -23.80044 -23.47486 -22.55943 -21.63358 -20.49423 -19.29171 -18.88754 -16.54625 -16.27538 -16.16286 -15.71816 -15.14994 -14.62815 -14.50935 -14.47370 -13.83864 -13.70539 -13.45069 -13.24329 -13.03695 -12.63285 -12.42518 -12.11060 -12.04598 -11.84927 -11.83865 -11.38702 -11.37400 -11.13260 -10.99597 -10.80462 -10.65366 -10.59320 -10.54896 -10.26438 -10.10150 -9.90388 -9.55283 -9.51804 -9.03103 -8.85620 -8.31289 -8.05380 -5.96200 -3.97685 3.34259 3.38951 3.41039 3.71326 4.03471 4.48250 4.58308 4.59424 4.72775 4.83696 4.98409 5.16002 5.21346 5.26167 5.31538 5.37517 5.39041 5.39420 5.46260 5.52158 5.58982 5.67340 5.73132 5.76383 5.79739 5.81947 5.92536 5.94252 5.99037 6.03944 6.14726 6.21847 6.25195 6.34561 6.46894 6.60187 6.69172 7.00108 7.10211 7.12481 7.21680 7.37387 7.41751 7.71745 7.88821 8.04650 8.47785 9.08734 9.65630 11.15133 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.038155 B = 0.003089 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.677827 B = 9061.200911 C = 9172.152414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.088 3.912 3 H 0.098 0.902 4 C -0.145 4.145 5 C -0.083 4.083 6 H 0.074 0.926 7 C 0.060 3.940 8 N -0.534 5.534 9 C 0.057 3.943 10 C -0.099 4.099 11 C -0.081 4.081 12 C 0.029 3.971 13 C -0.515 4.515 14 H 0.054 0.946 15 C 0.056 3.944 16 N -0.896 5.896 17 Si 0.889 3.111 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.278 1.278 21 C -0.111 4.111 22 C 0.059 3.941 23 C -0.139 4.139 24 C 0.055 3.945 25 O -0.381 6.381 26 H 0.061 0.939 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.031 0.969 32 H 0.069 0.931 33 H 0.025 0.975 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.071 0.929 37 H 0.050 0.950 38 H 0.016 0.984 39 H 0.013 0.987 40 H 0.260 0.740 41 H 0.065 0.935 42 H 0.058 0.942 43 H 0.064 0.936 44 H 0.026 0.974 45 H 0.065 0.935 46 H 0.088 0.912 47 H 0.090 0.910 48 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.668 21.312 6.175 22.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.030 3.970 3 H 0.115 0.885 4 C -0.183 4.183 5 C -0.102 4.102 6 H 0.092 0.908 7 C -0.068 4.068 8 N -0.258 5.258 9 C -0.071 4.071 10 C -0.137 4.137 11 C -0.100 4.100 12 C -0.008 4.008 13 C -0.553 4.553 14 H 0.072 0.928 15 C -0.145 4.145 16 N -0.536 5.536 17 Si 0.717 3.283 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.204 1.204 21 C -0.149 4.149 22 C -0.068 4.068 23 C -0.177 4.177 24 C -0.022 4.022 25 O -0.301 6.301 26 H 0.080 0.920 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.049 0.951 32 H 0.087 0.913 33 H 0.044 0.956 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.068 0.932 38 H 0.035 0.965 39 H 0.032 0.968 40 H 0.070 0.930 41 H 0.083 0.917 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.044 0.956 45 H 0.084 0.916 46 H 0.106 0.894 47 H 0.108 0.892 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.701 21.040 6.828 22.428 hybrid contribution 0.261 -0.579 -1.765 1.876 sum 3.962 20.461 5.063 21.447 Atomic orbital electron populations 1.22465 0.96533 1.03013 1.02454 1.22106 0.93384 0.96119 0.85344 0.88461 1.22226 1.01775 0.96149 0.98181 1.21192 1.00588 0.93174 0.95224 0.90816 1.22109 0.99342 0.89141 0.96189 1.61891 1.02449 1.07662 1.53814 1.22203 0.96017 0.94613 0.94227 1.21542 0.97314 0.92867 1.01955 1.21229 0.93772 0.97726 0.97251 1.19105 0.95954 0.88707 0.97064 1.21224 1.18992 0.92513 1.22602 0.92795 1.25016 0.95289 0.98377 0.95790 1.69954 1.30881 1.13836 1.38927 0.86717 0.80279 0.79997 0.81338 1.20277 1.21362 1.20373 1.21684 0.98660 0.93223 1.01357 1.22131 0.88974 0.98540 0.97198 1.22097 1.01377 1.00637 0.93575 1.22654 0.98744 0.81953 0.98824 1.87960 1.73794 1.25222 1.43079 0.92030 0.91637 0.91575 0.91138 0.91220 0.95125 0.91256 0.95650 0.91728 0.91881 0.90998 0.93158 0.96528 0.96839 0.93044 0.91660 0.92299 0.91808 0.95598 0.91645 0.89388 0.89162 0.93056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.49 8.65 37.16 0.32 -1.17 16 2 C 0.09 0.78 3.91 -26.69 -0.10 0.67 16 3 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 4 C -0.15 -1.27 4.92 -26.59 -0.13 -1.40 16 5 C -0.08 -0.84 2.02 -90.44 -0.18 -1.02 16 6 H 0.07 0.78 5.19 -51.93 -0.27 0.51 16 7 C 0.06 0.69 4.40 -3.82 -0.02 0.68 16 8 N -0.53 -7.44 4.10 -234.67 -0.96 -8.41 16 9 C 0.06 0.87 5.43 -3.83 -0.02 0.85 16 10 C -0.10 -1.85 5.15 -26.65 -0.14 -1.99 16 11 C -0.08 -1.65 2.20 -90.50 -0.20 -1.85 16 12 C 0.03 0.74 4.45 -27.88 -0.12 0.61 16 13 C -0.51 -14.39 8.45 -34.44 -0.29 -14.69 16 14 H 0.05 1.46 7.08 -52.49 -0.37 1.09 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -27.04 13.29 55.43 0.74 -26.30 16 17 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 C -0.11 -1.92 5.38 -26.65 -0.14 -2.06 16 22 C 0.06 0.85 5.29 -3.83 -0.02 0.83 16 23 C -0.14 -1.48 5.27 -26.59 -0.14 -1.62 16 24 C 0.05 0.54 6.51 37.20 0.24 0.79 16 25 O -0.38 -4.19 10.60 -35.23 -0.37 -4.57 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.57 4.98 -51.93 -0.26 0.31 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.03 0.35 8.00 -51.93 -0.42 -0.07 16 32 H 0.07 0.78 7.79 -51.93 -0.40 0.37 16 33 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.90 7.93 -51.93 -0.41 0.49 16 35 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 36 H 0.07 1.44 7.05 -51.93 -0.37 1.07 16 37 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 41 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.06 0.82 6.66 -51.93 -0.35 0.48 16 44 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.09 1.05 7.85 -51.93 -0.41 0.65 16 47 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 48 H 0.05 0.49 6.34 -51.93 -0.33 0.16 16 LS Contribution 355.65 15.07 5.36 5.36 Total: -1.00 -29.60 355.65 -10.36 -39.96 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -9.06 Total: -2.86 kcal Atomic # 6 Polarization: -18.81 SS G_CDS: -1.04 Total: -19.86 kcal Atomic # 7 Polarization: -34.48 SS G_CDS: -0.23 Total: -34.71 kcal Atomic # 8 Polarization: -4.19 SS G_CDS: -0.37 Total: -4.57 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.60 -10.36 -39.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260075200.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.883 kcal (2) G-P(sol) polarization free energy of solvation -29.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds