Wall clock time and date at job start Tue Mar 31 2020 05:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.49208 * 2 1 4 4 C 1.53093 * 109.48134 * 239.97455 * 2 1 3 5 5 C 1.53181 * 109.16303 * 182.40935 * 4 2 1 6 6 H 1.09002 * 109.53937 * 297.11216 * 5 4 2 7 7 C 1.52996 * 109.54105 * 176.93386 * 5 4 2 8 8 N 1.46905 * 109.47081 * 176.21977 * 7 5 4 9 9 C 1.46848 * 111.00131 * 169.62301 * 8 7 5 10 10 C 1.53039 * 109.52203 * 185.83879 * 9 8 7 11 11 C 1.53113 * 109.27943 * 300.82529 * 10 9 8 12 12 C 1.52998 * 109.57451 * 177.59445 * 11 10 9 13 13 C 1.50696 * 109.47520 * 65.27920 * 12 11 10 14 14 H 1.07996 * 119.99860 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00197 * 179.97438 * 13 12 11 16 16 N 1.31518 * 119.99933 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00028 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.46786 * 90.00281 * 17 15 13 19 19 H 1.48499 * 109.47193 * 210.00103 * 17 15 13 20 20 H 1.48495 * 109.47095 * 330.00553 * 17 15 13 21 21 C 1.53119 * 109.16152 * 57.65343 * 11 10 9 22 22 C 1.46843 * 110.99847 * 293.83881 * 8 7 5 23 23 C 1.53176 * 109.10847 * 57.02317 * 5 4 2 24 24 C 1.53280 * 109.06479 * 303.05442 * 23 5 4 25 25 O 1.42903 * 109.48131 * 120.02773 * 2 1 3 26 26 H 1.08996 * 109.46942 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47106 * 300.02617 * 1 2 3 28 28 H 1.09003 * 109.47200 * 60.02664 * 1 2 3 29 29 H 1.08997 * 109.52114 * 62.50142 * 4 2 1 30 30 H 1.09005 * 109.51816 * 302.31132 * 4 2 1 31 31 H 1.08994 * 109.47241 * 296.22069 * 7 5 4 32 32 H 1.08998 * 109.47266 * 56.22507 * 7 5 4 33 33 H 1.08996 * 109.46483 * 305.85817 * 9 8 7 34 34 H 1.09003 * 109.45631 * 65.82523 * 9 8 7 35 35 H 1.09000 * 109.49950 * 180.87988 * 10 9 8 36 36 H 1.09000 * 109.49810 * 60.76830 * 10 9 8 37 37 H 1.08999 * 109.52258 * 297.74838 * 11 10 9 38 38 H 1.09003 * 109.47358 * 185.28548 * 12 11 10 39 39 H 1.09006 * 109.46769 * 305.28318 * 12 11 10 40 40 H 0.97001 * 119.99461 * 179.97438 * 16 15 13 41 41 H 1.09005 * 109.50082 * 182.40338 * 21 11 10 42 42 H 1.08997 * 109.50425 * 62.28924 * 21 11 10 43 43 H 1.08997 * 109.46497 * 294.17127 * 22 8 7 44 44 H 1.08994 * 109.46645 * 54.15183 * 22 8 7 45 45 H 1.08999 * 109.52725 * 62.88195 * 23 5 4 46 46 H 1.09007 * 109.52129 * 183.06856 * 23 5 4 47 47 H 1.08994 * 109.46220 * 297.56211 * 24 23 5 48 48 H 1.09004 * 109.47058 * 177.55606 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0405 -0.7222 -1.2496 5 6 3.5711 -0.7708 -1.2122 6 1 3.9689 0.2436 -1.2408 7 6 4.0878 -1.5575 -2.4184 8 7 5.5565 -1.5265 -2.4306 9 6 6.0945 -2.4665 -3.4222 10 6 7.6197 -2.5145 -3.3066 11 6 8.1889 -1.1129 -3.5430 12 6 9.7088 -1.1409 -3.3698 13 6 10.3214 -1.9990 -4.4466 14 1 9.6899 -2.4763 -5.1813 15 6 11.6882 -2.1739 -4.4945 16 7 12.4573 -1.5923 -3.6001 17 14 12.4476 -3.2370 -5.8296 18 1 12.7635 -2.3960 -7.0121 19 1 13.6948 -3.8593 -5.3174 20 1 11.4881 -4.3007 -6.2209 21 6 7.5760 -0.1438 -2.5283 22 6 6.0521 -0.1645 -2.6665 23 6 4.0194 -1.4608 0.0798 24 6 3.4308 -0.7093 1.2790 25 8 2.0066 -0.6742 1.1664 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5143 0.8898 28 1 -0.3634 0.5134 -0.8902 29 1 1.7148 -0.1842 -2.1398 30 1 1.6443 -1.7374 -1.2709 31 1 3.7468 -2.5905 -2.3516 32 1 3.7073 -1.1078 -3.3355 33 1 5.6850 -3.4601 -3.2403 34 1 5.8163 -2.1370 -4.4233 35 1 8.0199 -3.2005 -4.0531 36 1 7.8985 -2.8572 -2.3101 37 1 7.9435 -0.7857 -4.5534 38 1 10.1020 -0.1271 -3.4456 39 1 9.9555 -1.5542 -2.3918 40 1 13.4188 -1.7157 -3.6336 41 1 7.9451 0.8641 -2.7188 42 1 7.8542 -0.4491 -1.5196 43 1 5.7742 0.1543 -3.6711 44 1 5.6120 0.5138 -1.9356 45 1 3.6631 -2.4909 0.0853 46 1 5.1078 -1.4506 0.1394 47 1 3.8193 0.3089 1.2958 48 1 3.7099 -1.2201 2.2006 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260075206.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:17 Heat of formation + Delta-G solvation = -80.449814 kcal Electronic energy + Delta-G solvation = -22941.388359 eV Core-core repulsion = 19801.491589 eV Total energy + Delta-G solvation = -3139.896770 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.90824 -38.55474 -35.41097 -33.45109 -32.89905 -31.92209 -30.36717 -28.70697 -27.67916 -25.62803 -23.89586 -23.10311 -22.57383 -21.43961 -20.65123 -19.85109 -18.88818 -16.49183 -16.23855 -15.98552 -15.85002 -15.09237 -14.74140 -14.48169 -14.46377 -14.00801 -13.67222 -13.42277 -13.10774 -12.73522 -12.60160 -12.50166 -12.28970 -12.05407 -12.00498 -11.79994 -11.41092 -11.27370 -11.12625 -10.97149 -10.82974 -10.66751 -10.59334 -10.57231 -10.35166 -10.22393 -9.88951 -9.55388 -9.51531 -9.03194 -8.84774 -8.31541 -8.05492 -5.96394 -3.97766 3.32816 3.39335 3.42191 3.61344 4.01480 4.48165 4.53183 4.64139 4.72154 4.81309 4.99814 5.14519 5.20456 5.28840 5.33835 5.36885 5.38981 5.41726 5.44668 5.51420 5.58013 5.63347 5.68846 5.76845 5.79092 5.81840 5.86849 5.93090 5.99040 6.01280 6.14623 6.19554 6.24329 6.32915 6.46838 6.60078 6.69286 7.00232 7.10544 7.12551 7.21699 7.37028 7.41530 7.71960 7.88839 8.04605 8.47810 9.08888 9.65625 11.14970 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.042856 B = 0.002961 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.200487 B = 9454.449073 C = 9665.647458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.087 3.913 3 H 0.055 0.945 4 C -0.144 4.144 5 C -0.086 4.086 6 H 0.072 0.928 7 C 0.062 3.938 8 N -0.533 5.533 9 C 0.057 3.943 10 C -0.099 4.099 11 C -0.081 4.081 12 C 0.028 3.972 13 C -0.514 4.514 14 H 0.054 0.946 15 C 0.055 3.945 16 N -0.896 5.896 17 Si 0.888 3.112 18 H -0.282 1.282 19 H -0.287 1.287 20 H -0.274 1.274 21 C -0.111 4.111 22 C 0.057 3.943 23 C -0.140 4.140 24 C 0.060 3.940 25 O -0.384 6.384 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.028 0.972 33 H 0.064 0.936 34 H 0.025 0.975 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.050 0.950 38 H 0.013 0.987 39 H 0.016 0.984 40 H 0.259 0.741 41 H 0.058 0.942 42 H 0.065 0.935 43 H 0.026 0.974 44 H 0.066 0.934 45 H 0.066 0.934 46 H 0.088 0.912 47 H 0.047 0.953 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.064 2.866 6.335 23.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.029 3.971 3 H 0.073 0.927 4 C -0.183 4.183 5 C -0.105 4.105 6 H 0.090 0.910 7 C -0.066 4.066 8 N -0.258 5.258 9 C -0.071 4.071 10 C -0.137 4.137 11 C -0.100 4.100 12 C -0.009 4.009 13 C -0.552 4.552 14 H 0.072 0.928 15 C -0.145 4.145 16 N -0.536 5.536 17 Si 0.716 3.284 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.199 1.199 21 C -0.149 4.149 22 C -0.071 4.071 23 C -0.177 4.177 24 C -0.017 4.017 25 O -0.304 6.304 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.047 0.953 33 H 0.083 0.917 34 H 0.044 0.956 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.068 0.932 38 H 0.032 0.968 39 H 0.035 0.965 40 H 0.069 0.931 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.044 0.956 44 H 0.084 0.916 45 H 0.085 0.915 46 H 0.107 0.893 47 H 0.065 0.935 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -21.834 2.644 6.974 23.072 hybrid contribution 0.509 -0.196 -1.824 1.904 sum -21.324 2.448 5.150 22.074 Atomic orbital electron populations 1.21766 0.93346 1.02848 1.02236 1.22039 0.94765 0.94934 0.85314 0.92709 1.22261 0.95929 1.01889 0.98178 1.21230 0.94034 0.99881 0.95354 0.91006 1.22089 0.88409 1.00140 0.96004 1.61920 1.06309 1.07515 1.50069 1.22187 0.97476 0.95166 0.92237 1.21537 0.91191 0.98559 1.02383 1.21225 0.98820 0.93226 0.96684 1.19112 0.87867 0.96852 0.97039 1.21255 0.91631 1.29535 1.12789 0.92750 1.25021 0.97505 0.96056 0.95941 1.69969 1.04448 1.44114 1.35064 0.86654 0.78803 0.80737 0.82158 1.20798 1.21288 1.19937 1.21686 0.92537 0.99766 1.00936 1.22149 0.97006 0.89325 0.98572 1.22143 1.02488 0.99630 0.93463 1.22666 0.80496 0.99644 0.98894 1.87903 1.21533 1.78016 1.42908 0.91857 0.91982 0.91233 0.91221 0.91027 0.91083 0.95339 0.91730 0.95630 0.90981 0.91876 0.93173 0.96833 0.96523 0.93108 0.92297 0.91657 0.95624 0.91604 0.91484 0.89317 0.93460 0.89007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 9.56 37.16 0.36 -0.72 16 2 C 0.09 0.80 3.26 -26.68 -0.09 0.71 16 3 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 4 C -0.14 -1.29 4.71 -26.59 -0.13 -1.41 16 5 C -0.09 -0.89 2.18 -90.44 -0.20 -1.08 16 6 H 0.07 0.77 6.28 -51.93 -0.33 0.45 16 7 C 0.06 0.71 4.37 -3.82 -0.02 0.70 16 8 N -0.53 -7.50 4.14 -234.68 -0.97 -8.47 16 9 C 0.06 0.87 5.46 -3.83 -0.02 0.85 16 10 C -0.10 -1.85 5.15 -26.65 -0.14 -1.99 16 11 C -0.08 -1.65 2.20 -90.50 -0.20 -1.85 16 12 C 0.03 0.73 4.45 -27.89 -0.12 0.60 16 13 C -0.51 -14.37 8.45 -34.44 -0.29 -14.66 16 14 H 0.05 1.48 7.08 -52.49 -0.37 1.11 16 15 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 16 N -0.90 -27.06 13.29 55.43 0.74 -26.32 16 17 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 21 C -0.11 -1.92 5.38 -26.65 -0.14 -2.07 16 22 C 0.06 0.83 5.30 -3.84 -0.02 0.81 16 23 C -0.14 -1.48 5.28 -26.50 -0.14 -1.62 16 24 C 0.06 0.59 6.85 37.30 0.26 0.85 16 25 O -0.38 -4.27 10.41 -35.23 -0.37 -4.64 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.80 7.98 -51.93 -0.41 0.39 16 32 H 0.03 0.33 8.12 -51.93 -0.42 -0.09 16 33 H 0.06 0.91 8.01 -51.93 -0.42 0.49 16 34 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 1.44 7.06 -51.93 -0.37 1.08 16 36 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 41 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 42 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 43 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 44 H 0.07 0.85 6.16 -51.93 -0.32 0.53 16 45 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.09 1.06 7.83 -51.93 -0.41 0.65 16 47 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 361.98 15.07 5.45 5.45 Total: -1.00 -29.72 361.98 -10.52 -40.24 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -9.36 Total: -3.57 kcal Atomic # 6 Polarization: -18.40 SS G_CDS: -0.99 Total: -19.39 kcal Atomic # 7 Polarization: -34.56 SS G_CDS: -0.23 Total: -34.79 kcal Atomic # 8 Polarization: -4.27 SS G_CDS: -0.37 Total: -4.64 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -29.72 -10.52 -40.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260075206.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.206 kcal (2) G-P(sol) polarization free energy of solvation -29.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds