Wall clock time and date at job start Tue Mar 31 2020 05:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52627 * 1 3 3 H 1.10859 * 107.14614 * 2 1 4 4 C 1.52885 * 110.53746 * 243.68317 * 2 1 3 5 5 C 1.53118 * 109.45634 * 286.09217 * 4 2 1 6 6 H 1.08715 * 110.34312 * 60.86502 * 5 4 2 7 7 C 1.53255 * 109.23020 * 180.80371 * 5 4 2 8 8 N 1.46902 * 109.47249 * 183.90056 * 7 5 4 9 9 C 1.46847 * 111.00039 * 199.50639 * 8 7 5 10 10 C 1.53039 * 109.52079 * 174.16327 * 9 8 7 11 11 C 1.53114 * 109.27996 * 59.18388 * 10 9 8 12 12 C 1.53119 * 109.15817 * 302.34190 * 11 10 9 13 13 H 1.09001 * 109.53816 * 297.69319 * 12 11 10 14 14 C 1.50701 * 109.50501 * 177.59416 * 12 11 10 15 15 H 1.07999 * 120.00602 * 245.29238 * 14 12 11 16 16 C 1.37885 * 119.99448 * 65.28843 * 14 12 11 17 17 N 1.31506 * 120.00376 * 356.63578 * 16 14 12 18 18 Si 1.86804 * 119.99630 * 176.64190 * 16 14 12 19 19 H 1.48495 * 109.47187 * 94.99272 * 18 16 14 20 20 H 1.48501 * 109.46796 * 214.99119 * 18 16 14 21 21 H 1.48499 * 109.46968 * 334.98958 * 18 16 14 22 22 C 1.46844 * 110.99798 * 75.29826 * 8 7 5 23 23 C 1.52940 * 108.53414 * 299.91866 * 5 4 2 24 24 C 1.52524 * 110.55153 * 57.51917 * 23 5 4 25 25 H 1.11072 * 106.96348 * 194.91072 * 24 23 5 26 26 C 1.52886 * 110.29012 * 79.26019 * 24 23 5 27 27 O 1.41083 * 113.03783 * 312.93373 * 24 23 5 28 28 H 1.09010 * 109.46574 * 301.89744 * 1 2 3 29 29 H 1.09000 * 109.47162 * 61.89458 * 1 2 3 30 30 H 1.08999 * 109.47043 * 181.89942 * 1 2 3 31 31 H 1.09077 * 109.55713 * 46.11453 * 4 2 1 32 32 H 1.09069 * 109.57500 * 166.03007 * 4 2 1 33 33 H 1.09000 * 109.47419 * 303.90848 * 7 5 4 34 34 H 1.09007 * 109.46915 * 63.90479 * 7 5 4 35 35 H 1.08996 * 109.46297 * 294.17909 * 9 8 7 36 36 H 1.08999 * 109.45945 * 54.14750 * 9 8 7 37 37 H 1.08995 * 109.50482 * 299.23781 * 10 9 8 38 38 H 1.09003 * 109.50048 * 179.12528 * 10 9 8 39 39 H 1.08998 * 109.52379 * 182.44153 * 11 10 9 40 40 H 1.08998 * 109.52520 * 62.24628 * 11 10 9 41 41 H 0.96996 * 120.00290 * 179.97438 * 17 16 14 42 42 H 1.08999 * 109.46791 * 305.85824 * 22 8 7 43 43 H 1.09000 * 109.46273 * 65.83166 * 22 8 7 44 44 H 1.09303 * 109.27180 * 296.93572 * 23 5 4 45 45 H 1.09290 * 109.30224 * 178.15491 * 23 5 4 46 46 H 1.08997 * 109.47534 * 293.12629 * 26 24 23 47 47 H 1.09000 * 109.47099 * 53.12825 * 26 24 23 48 48 H 1.09002 * 109.46778 * 173.12761 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5263 0.0000 0.0000 3 1 1.8531 1.0593 0.0000 4 6 2.0626 -0.6347 -1.2833 5 6 1.8668 -2.1521 -1.2223 6 1 0.8103 -2.3937 -1.1368 7 6 2.4242 -2.7849 -2.5019 8 7 2.1556 -4.2291 -2.4913 9 6 3.0415 -4.9360 -3.4250 10 6 2.8355 -6.4457 -3.2817 11 6 1.3728 -6.7868 -3.5794 12 6 0.4693 -6.0008 -2.6253 13 1 0.6767 -6.2995 -1.5977 14 6 -0.9744 -6.2855 -2.9504 15 1 -1.6102 -5.4957 -3.3224 16 6 -1.4836 -7.5545 -2.7729 17 7 -0.6941 -8.5314 -2.3833 18 14 -3.2951 -7.8862 -3.0861 19 1 -3.4736 -8.3918 -4.4709 20 1 -3.7863 -8.9023 -2.1210 21 1 -4.0654 -6.6282 -2.9153 22 6 0.7439 -4.5040 -2.7875 23 6 2.6337 -2.6931 -0.0147 24 6 2.1582 -2.0181 1.2678 25 1 2.9158 -2.2378 2.0498 26 6 0.8453 -2.6429 1.7404 27 8 2.0658 -0.6151 1.1517 28 1 -0.3633 0.5431 0.8726 29 1 -0.3633 0.4841 -0.9065 30 1 -0.3633 -1.0271 0.0341 31 1 1.5235 -0.2331 -2.1423 32 1 3.1247 -0.4089 -1.3864 33 1 1.9445 -2.3324 -3.3698 34 1 3.4999 -2.6157 -2.5521 35 1 2.8093 -4.6331 -4.4459 36 1 4.0788 -4.6880 -3.1998 37 1 3.0808 -6.7516 -2.2647 38 1 3.4820 -6.9696 -3.9858 39 1 1.2116 -7.8553 -3.4363 40 1 1.1380 -6.5167 -4.6089 41 1 -1.0524 -9.4240 -2.2581 42 1 0.1123 -3.9422 -2.0994 43 1 0.5224 -4.2032 -3.8115 44 1 3.7016 -2.5049 -0.1517 45 1 2.4755 -3.7719 0.0600 46 1 0.0552 -2.4125 1.0258 47 1 0.9636 -3.7239 1.8152 48 1 0.5812 -2.2378 2.7173 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260116748.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:46 Heat of formation + Delta-G solvation = -72.857605 kcal Electronic energy + Delta-G solvation = -23949.765410 eV Core-core repulsion = 20810.197863 eV Total energy + Delta-G solvation = -3139.567547 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.90010 -38.11674 -34.88831 -33.28367 -33.05066 -31.40548 -29.86738 -29.67607 -26.15356 -25.88227 -24.94847 -22.90635 -22.62740 -21.32805 -20.73991 -18.60221 -18.31978 -16.48963 -16.29741 -15.74938 -15.30127 -14.70855 -14.61023 -14.52221 -14.04910 -13.82358 -13.30276 -13.22465 -12.81789 -12.75049 -12.59174 -12.34194 -12.17099 -12.05636 -11.84528 -11.54075 -11.43555 -11.13034 -10.96234 -10.78307 -10.75215 -10.64945 -10.48647 -10.17294 -10.09935 -9.83001 -9.74282 -9.42260 -9.35596 -8.98185 -8.71205 -8.29891 -7.63360 -5.98195 -4.03251 3.29975 3.37451 3.40598 3.74603 4.36074 4.50113 4.77049 4.81533 4.95353 5.05944 5.13225 5.30661 5.32918 5.40475 5.51028 5.55824 5.59630 5.69797 5.73583 5.75446 5.81313 5.90897 5.93724 5.98117 6.03098 6.06891 6.08046 6.21726 6.25073 6.31951 6.42229 6.44795 6.49391 6.53647 6.57710 6.71861 6.75730 6.99105 7.21815 7.40236 7.68423 7.75951 7.76302 7.84250 8.07512 8.15244 8.48899 9.01493 9.61047 11.08860 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.017382 B = 0.004944 C = 0.004343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.515861 B = 5662.083562 C = 6444.998454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.102 3.898 3 H 0.085 0.915 4 C -0.146 4.146 5 C -0.081 4.081 6 H 0.078 0.922 7 C 0.061 3.939 8 N -0.536 5.536 9 C 0.064 3.936 10 C -0.117 4.117 11 C -0.108 4.108 12 C 0.056 3.944 13 H 0.036 0.964 14 C -0.515 4.515 15 H 0.052 0.948 16 C 0.064 3.936 17 N -0.888 5.888 18 Si 0.887 3.113 19 H -0.282 1.282 20 H -0.286 1.286 21 H -0.275 1.275 22 C 0.068 3.932 23 C -0.134 4.134 24 C 0.098 3.902 25 H 0.085 0.915 26 C -0.180 4.180 27 O -0.381 6.381 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.027 0.973 34 H 0.062 0.938 35 H 0.021 0.979 36 H 0.056 0.944 37 H 0.060 0.940 38 H 0.045 0.955 39 H 0.084 0.916 40 H 0.029 0.971 41 H 0.259 0.741 42 H 0.058 0.942 43 H 0.015 0.985 44 H 0.059 0.941 45 H 0.091 0.909 46 H 0.060 0.940 47 H 0.069 0.931 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.981 13.641 3.381 15.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.044 3.956 3 H 0.103 0.897 4 C -0.184 4.184 5 C -0.099 4.099 6 H 0.097 0.903 7 C -0.068 4.068 8 N -0.260 5.260 9 C -0.064 4.064 10 C -0.155 4.155 11 C -0.146 4.146 12 C 0.037 3.963 13 H 0.054 0.946 14 C -0.554 4.554 15 H 0.070 0.930 16 C -0.137 4.137 17 N -0.526 5.526 18 Si 0.716 3.284 19 H -0.209 1.209 20 H -0.212 1.212 21 H -0.200 1.200 22 C -0.058 4.058 23 C -0.171 4.171 24 C 0.040 3.960 25 H 0.103 0.897 26 C -0.237 4.237 27 O -0.301 6.301 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.045 0.955 34 H 0.081 0.919 35 H 0.039 0.961 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.064 0.936 39 H 0.103 0.897 40 H 0.048 0.952 41 H 0.069 0.931 42 H 0.077 0.923 43 H 0.034 0.966 44 H 0.078 0.922 45 H 0.109 0.891 46 H 0.079 0.921 47 H 0.088 0.912 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.146 13.369 4.028 15.685 hybrid contribution -1.345 -0.171 -1.384 1.937 sum 5.801 13.198 2.645 14.658 Atomic orbital electron populations 1.22434 0.96521 1.03049 1.02003 1.21796 0.92789 0.95934 0.85083 0.89681 1.22228 1.01715 0.96477 0.98005 1.21035 1.00928 0.92943 0.95041 0.90343 1.22144 0.99592 0.89247 0.95769 1.61950 1.06265 1.06377 1.51423 1.22011 0.95393 0.95776 0.93177 1.21669 0.99566 0.93315 1.00936 1.21637 0.91018 1.03788 0.98205 1.18657 0.93920 0.87424 0.96303 0.94585 1.21144 0.95246 0.95093 1.43872 0.92978 1.24924 0.97391 0.96268 0.95139 1.69911 1.34605 1.01033 1.47080 0.86657 0.85834 0.78043 0.77916 1.20874 1.21186 1.19950 1.22327 0.85566 1.00792 0.97153 1.22029 0.99383 1.02299 0.93405 1.21881 0.96872 0.79995 0.97213 0.89711 1.22468 0.98475 1.01464 1.01334 1.86688 1.82144 1.20802 1.40437 0.92217 0.91803 0.91694 0.91177 0.91432 0.95450 0.91926 0.96109 0.92562 0.92085 0.93644 0.89742 0.95216 0.93091 0.92325 0.96625 0.92197 0.89057 0.92125 0.91168 0.92624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.00 9.18 36.97 0.34 -1.66 16 2 C 0.10 1.15 3.37 -26.98 -0.09 1.06 16 3 H 0.09 0.85 8.28 -50.86 -0.42 0.43 16 4 C -0.15 -1.66 4.82 -26.73 -0.13 -1.79 16 5 C -0.08 -1.09 2.17 -90.46 -0.20 -1.29 16 6 H 0.08 1.21 5.31 -52.09 -0.28 0.93 16 7 C 0.06 0.90 4.38 -3.69 -0.02 0.88 16 8 N -0.54 -9.53 4.09 -234.50 -0.96 -10.49 16 9 C 0.06 1.12 5.43 -3.83 -0.02 1.09 16 10 C -0.12 -2.26 6.09 -26.65 -0.16 -2.42 16 11 C -0.11 -2.54 5.08 -26.61 -0.14 -2.68 16 12 C 0.06 1.38 2.20 -91.69 -0.20 1.17 16 13 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 14 C -0.51 -14.02 8.50 -34.44 -0.29 -14.31 16 15 H 0.05 1.41 7.75 -52.49 -0.41 1.00 16 16 C 0.06 1.77 5.35 -17.82 -0.10 1.67 16 17 N -0.89 -25.27 11.61 55.43 0.64 -24.62 16 18 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 22 C 0.07 1.43 4.52 -3.83 -0.02 1.41 16 23 C -0.13 -1.79 4.63 -27.01 -0.12 -1.91 16 24 C 0.10 1.24 3.35 -27.03 -0.09 1.15 16 25 H 0.09 1.00 8.29 -50.74 -0.42 0.58 16 26 C -0.18 -2.31 9.29 37.10 0.34 -1.96 16 27 O -0.38 -5.00 9.88 -34.68 -0.34 -5.34 16 28 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 29 H 0.06 0.62 8.11 -51.93 -0.42 0.20 16 30 H 0.06 0.80 4.93 -51.93 -0.26 0.54 16 31 H 0.07 0.74 8.07 -51.89 -0.42 0.32 16 32 H 0.07 0.73 8.15 -51.89 -0.42 0.31 16 33 H 0.03 0.41 8.01 -51.93 -0.42 -0.01 16 34 H 0.06 0.85 7.80 -51.92 -0.41 0.44 16 35 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.06 0.86 7.93 -51.93 -0.41 0.44 16 37 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 38 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.08 2.22 6.44 -51.93 -0.33 1.88 16 40 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 42 H 0.06 1.22 6.62 -51.93 -0.34 0.88 16 43 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 44 H 0.06 0.77 8.17 -51.76 -0.42 0.35 16 45 H 0.09 1.40 7.64 -51.76 -0.40 1.00 16 46 H 0.06 0.82 5.33 -51.93 -0.28 0.54 16 47 H 0.07 0.92 8.03 -51.93 -0.42 0.50 16 48 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 353.10 15.07 5.32 5.32 Total: -1.00 -27.73 353.10 -10.23 -37.96 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -8.98 Total: 0.55 kcal Atomic # 6 Polarization: -18.67 SS G_CDS: -0.89 Total: -19.56 kcal Atomic # 7 Polarization: -34.80 SS G_CDS: -0.32 Total: -35.12 kcal Atomic # 8 Polarization: -5.00 SS G_CDS: -0.34 Total: -5.34 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -27.73 -10.23 -37.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260116748.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.895 kcal (2) G-P(sol) polarization free energy of solvation -27.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds