Wall clock time and date at job start Tue Mar 31 2020 05:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47870 * 2 1 4 4 C 1.53089 * 109.49013 * 239.97351 * 2 1 3 5 5 C 1.53176 * 109.16237 * 182.40170 * 4 2 1 6 6 C 1.52995 * 109.54371 * 176.84929 * 5 4 2 7 7 N 1.46894 * 109.47547 * 62.35014 * 6 5 4 8 8 C 1.46848 * 111.00334 * 52.00990 * 7 6 5 9 9 C 1.53030 * 109.52607 * 185.84329 * 8 7 6 10 10 C 1.53123 * 109.27658 * 300.82086 * 9 8 7 11 11 C 1.53123 * 109.16030 * 57.65790 * 10 9 8 12 12 H 1.08996 * 109.53567 * 62.30165 * 11 10 9 13 13 C 1.50702 * 109.50387 * 182.40563 * 11 10 9 14 14 H 1.07996 * 120.00396 * 119.80028 * 13 11 10 15 15 C 1.37879 * 119.99538 * 299.80053 * 13 11 10 16 16 N 1.31520 * 120.00283 * 359.97438 * 15 13 11 17 17 Si 1.86803 * 119.99810 * 179.97438 * 15 13 11 18 18 H 1.48493 * 109.47155 * 359.97438 * 17 15 13 19 19 H 1.48503 * 109.46847 * 120.00148 * 17 15 13 20 20 H 1.48494 * 109.47105 * 239.99768 * 17 15 13 21 21 C 1.46846 * 111.00125 * 176.22489 * 7 6 5 22 22 C 1.53177 * 109.03886 * 56.97656 * 5 4 2 23 23 C 1.53093 * 109.16435 * 303.02340 * 22 5 4 24 24 H 1.08997 * 109.47797 * 177.59186 * 23 22 5 25 25 C 1.53003 * 109.48881 * 297.61727 * 23 22 5 26 26 O 1.42898 * 109.41493 * 57.60355 * 23 22 5 27 27 H 1.08998 * 109.47109 * 299.99685 * 1 2 3 28 28 H 1.08998 * 109.47390 * 60.00413 * 1 2 3 29 29 H 1.09000 * 109.46698 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.52098 * 302.30364 * 4 2 1 31 31 H 1.08999 * 109.52173 * 62.49260 * 4 2 1 32 32 H 1.09004 * 109.54410 * 297.10925 * 5 4 2 33 33 H 1.09007 * 109.47121 * 182.35300 * 6 5 4 34 34 H 1.09007 * 109.47151 * 302.34385 * 6 5 4 35 35 H 1.09003 * 109.45938 * 305.86371 * 8 7 6 36 36 H 1.09003 * 109.45883 * 65.82712 * 8 7 6 37 37 H 1.08994 * 109.50716 * 180.88285 * 9 8 7 38 38 H 1.09002 * 109.53713 * 60.77853 * 9 8 7 39 39 H 1.08999 * 109.52736 * 297.74703 * 10 9 8 40 40 H 1.09002 * 109.51979 * 177.55874 * 10 9 8 41 41 H 0.97000 * 119.99604 * 180.02562 * 16 15 13 42 42 H 1.08996 * 109.46234 * 294.17105 * 21 7 6 43 43 H 1.09005 * 109.46319 * 54.15199 * 21 7 6 44 44 H 1.09002 * 109.52362 * 183.11104 * 22 5 4 45 45 H 1.08997 * 109.57242 * 62.95583 * 22 5 4 46 46 H 1.08993 * 109.47156 * 179.97438 * 25 23 22 47 47 H 1.09009 * 109.47114 * 299.94942 * 25 23 22 48 48 H 1.08997 * 109.47347 * 59.94807 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0408 -0.7222 -1.2495 5 6 3.5713 -0.7705 -1.2119 6 6 4.0882 -1.5589 -2.4169 7 7 3.6981 -0.8721 -3.6554 8 6 4.0966 0.5408 -3.6217 9 6 3.5485 1.2565 -4.8583 10 6 4.0983 0.5818 -6.1181 11 6 3.7104 -0.8995 -6.1048 12 1 2.6246 -0.9921 -6.1263 13 6 4.2978 -1.5842 -7.3120 14 1 4.9898 -2.4036 -7.1847 15 6 3.9519 -1.1645 -8.5789 16 7 3.1088 -0.1670 -8.7340 17 14 4.6805 -2.0128 -10.0753 18 1 5.5950 -3.0962 -9.6337 19 1 3.5875 -2.5912 -10.8975 20 1 5.4386 -1.0248 -10.8841 21 6 4.2539 -1.5527 -4.8320 22 6 4.0179 -1.4595 0.0812 23 6 3.4307 -0.7088 1.2793 24 1 3.7100 -1.2197 2.2007 25 6 3.9758 0.7206 1.3031 26 8 2.0066 -0.6740 1.1664 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6447 -1.7375 -1.2708 31 1 1.7150 -0.1843 -2.1398 32 1 3.9690 0.2440 -1.2406 33 1 5.1749 -1.6283 -2.3667 34 1 3.6594 -2.5610 -2.4065 35 1 3.6958 1.0098 -2.7231 36 1 5.1843 0.6113 -3.6136 37 1 3.8576 2.3016 -4.8409 38 1 2.4600 1.1990 -4.8602 39 1 5.1842 0.6738 -6.1363 40 1 3.6763 1.0609 -7.0016 41 1 2.8652 0.1279 -9.6254 42 1 5.3408 -1.4724 -4.8183 43 1 3.9671 -2.6041 -4.8127 44 1 5.1062 -1.4490 0.1424 45 1 3.6627 -2.4899 0.0873 46 1 3.5572 1.2549 2.1559 47 1 5.0621 0.6939 1.3891 48 1 3.6968 1.2312 0.3814 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260116753.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:18 Heat of formation + Delta-G solvation = -69.205621 kcal Electronic energy + Delta-G solvation = -23698.661346 eV Core-core repulsion = 20559.252161 eV Total energy + Delta-G solvation = -3139.409185 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.15239 -38.15660 -34.93259 -33.42442 -32.89189 -31.41831 -29.95887 -29.40492 -26.68299 -25.78096 -24.95563 -22.94297 -22.12875 -21.70436 -20.25002 -19.18878 -18.55366 -16.47735 -16.30166 -15.98525 -15.43827 -15.08850 -14.54539 -14.42241 -14.00885 -13.68540 -13.49515 -13.10402 -12.85474 -12.72764 -12.56820 -12.25637 -12.13907 -12.03638 -11.84896 -11.72512 -11.64638 -11.35742 -11.06491 -10.96061 -10.87119 -10.64504 -10.50866 -10.44517 -10.10858 -9.93113 -9.77911 -9.49194 -9.35312 -8.95543 -8.67809 -8.29062 -7.61155 -5.96541 -4.02463 3.30224 3.38352 3.42031 3.72016 4.35720 4.50914 4.69230 4.70707 4.86434 4.92364 5.09005 5.21236 5.28320 5.31544 5.33942 5.40204 5.46200 5.62596 5.66533 5.71319 5.75529 5.82237 5.88654 5.89842 5.92071 6.03594 6.05918 6.09469 6.12386 6.21706 6.28602 6.39390 6.43731 6.53352 6.53864 6.72921 6.76882 6.99181 7.23413 7.27037 7.42037 7.69811 7.77110 7.85677 8.10335 8.18891 8.49916 9.01900 9.61847 11.09471 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.031541 B = 0.003704 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.519711 B = 7557.510973 C = 7735.896310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.081 3.919 3 H 0.057 0.943 4 C -0.133 4.133 5 C -0.091 4.091 6 C 0.062 3.938 7 N -0.534 5.534 8 C 0.059 3.941 9 C -0.117 4.117 10 C -0.110 4.110 11 C 0.055 3.945 12 H 0.034 0.966 13 C -0.514 4.514 14 H 0.053 0.947 15 C 0.063 3.937 16 N -0.888 5.888 17 Si 0.889 3.111 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.285 1.285 21 C 0.068 3.932 22 C -0.145 4.145 23 C 0.090 3.910 24 H 0.097 0.903 25 C -0.187 4.187 26 O -0.379 6.379 27 H 0.057 0.943 28 H 0.072 0.928 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.024 0.976 34 H 0.070 0.930 35 H 0.061 0.939 36 H 0.019 0.981 37 H 0.044 0.956 38 H 0.060 0.940 39 H 0.028 0.972 40 H 0.090 0.910 41 H 0.259 0.741 42 H 0.017 0.983 43 H 0.057 0.943 44 H 0.069 0.931 45 H 0.071 0.929 46 H 0.060 0.940 47 H 0.064 0.936 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.352 1.837 18.511 18.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.023 3.977 3 H 0.074 0.926 4 C -0.171 4.171 5 C -0.109 4.109 6 C -0.067 4.067 7 N -0.259 5.259 8 C -0.069 4.069 9 C -0.155 4.155 10 C -0.148 4.148 11 C 0.036 3.964 12 H 0.052 0.948 13 C -0.553 4.553 14 H 0.071 0.929 15 C -0.138 4.138 16 N -0.527 5.527 17 Si 0.717 3.283 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.211 1.211 21 C -0.059 4.059 22 C -0.183 4.183 23 C 0.032 3.968 24 H 0.115 0.885 25 C -0.244 4.244 26 O -0.298 6.298 27 H 0.076 0.924 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.105 0.895 32 H 0.093 0.907 33 H 0.042 0.958 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.038 0.962 37 H 0.063 0.937 38 H 0.078 0.922 39 H 0.047 0.953 40 H 0.108 0.892 41 H 0.069 0.931 42 H 0.035 0.965 43 H 0.076 0.924 44 H 0.087 0.913 45 H 0.090 0.910 46 H 0.079 0.921 47 H 0.083 0.917 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.071 1.834 18.457 18.579 hybrid contribution 1.628 -0.308 -1.042 1.958 sum 0.557 1.526 17.415 17.491 Atomic orbital electron populations 1.21749 0.93348 1.02820 1.02141 1.22167 0.94752 0.95321 0.85417 0.92550 1.22144 0.94852 1.02020 0.98036 1.21348 0.96268 0.99746 0.93546 1.22094 0.97075 0.97896 0.89603 1.62028 1.60046 1.01985 1.01817 1.22110 0.96861 0.89363 0.98587 1.21672 1.00841 0.97179 0.95798 1.21645 0.97925 0.98941 0.96302 1.18657 0.96942 0.91349 0.89406 0.94786 1.21198 1.26663 1.16658 0.90748 0.92860 1.24932 0.95033 0.95058 0.98810 1.69906 1.33827 1.26835 1.22153 0.86584 0.79016 0.79548 0.83122 1.19885 1.21032 1.21122 1.22296 0.95627 0.97461 0.90502 1.22225 1.00752 1.00365 0.94940 1.22083 0.81175 0.95294 0.98201 0.88488 1.22465 1.01586 0.97675 1.02685 1.87939 1.20445 1.77930 1.43519 0.92360 0.90942 0.91927 0.91332 0.89501 0.90713 0.95789 0.91204 0.92078 0.96230 0.93726 0.92152 0.95285 0.89195 0.93150 0.96468 0.92400 0.91256 0.91043 0.92097 0.91673 0.91702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.57 37.16 0.36 -1.12 16 2 C 0.08 0.93 2.94 -26.68 -0.08 0.85 16 3 H 0.06 0.63 6.34 -51.93 -0.33 0.30 16 4 C -0.13 -1.69 4.47 -26.59 -0.12 -1.81 16 5 C -0.09 -1.12 1.47 -90.44 -0.13 -1.26 16 6 C 0.06 0.92 4.55 -3.83 -0.02 0.90 16 7 N -0.53 -9.64 4.17 -234.67 -0.98 -10.62 16 8 C 0.06 1.01 5.03 -3.84 -0.02 0.99 16 9 C -0.12 -2.27 6.09 -26.65 -0.16 -2.43 16 10 C -0.11 -2.60 5.03 -26.60 -0.13 -2.74 16 11 C 0.06 1.38 2.26 -91.69 -0.21 1.17 16 12 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 13 C -0.51 -14.13 8.56 -34.44 -0.29 -14.43 16 14 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 15 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 16 N -0.89 -25.36 11.37 55.43 0.63 -24.73 16 17 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 18 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 21 C 0.07 1.45 4.68 -3.83 -0.02 1.43 16 22 C -0.14 -1.54 4.93 -26.59 -0.13 -1.67 16 23 C 0.09 0.92 3.91 -26.68 -0.10 0.82 16 24 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 25 C -0.19 -1.71 8.65 37.16 0.32 -1.39 16 26 O -0.38 -4.65 10.24 -35.23 -0.36 -5.01 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.09 1.23 7.71 -51.93 -0.40 0.83 16 32 H 0.07 0.94 4.55 -51.93 -0.24 0.71 16 33 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 1.04 8.14 -51.92 -0.42 0.62 16 35 H 0.06 0.92 5.69 -51.93 -0.30 0.62 16 36 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.09 2.38 6.17 -51.93 -0.32 2.06 16 41 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 42 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.06 1.23 8.12 -51.93 -0.42 0.81 16 44 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 46 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.06 0.53 8.14 -51.92 -0.42 0.10 16 48 H 0.06 0.64 4.98 -51.93 -0.26 0.38 16 LS Contribution 352.10 15.07 5.31 5.31 Total: -1.00 -28.18 352.10 -10.25 -38.43 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -8.99 Total: -0.62 kcal Atomic # 6 Polarization: -18.20 SS G_CDS: -0.84 Total: -19.03 kcal Atomic # 7 Polarization: -34.99 SS G_CDS: -0.35 Total: -35.34 kcal Atomic # 8 Polarization: -4.65 SS G_CDS: -0.36 Total: -5.01 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -28.18 -10.25 -38.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260116753.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.780 kcal (2) G-P(sol) polarization free energy of solvation -28.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds