Wall clock time and date at job start Tue Mar 31 2020 05:29:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.49262 * 2 1 4 4 C 1.53089 * 109.48147 * 239.97189 * 2 1 3 5 5 C 1.53184 * 109.16229 * 297.62634 * 4 2 1 6 6 C 1.52995 * 109.54459 * 183.15299 * 5 4 2 7 7 N 1.46904 * 109.47202 * 184.78436 * 6 5 4 8 8 C 1.46846 * 110.99978 * 199.98572 * 7 6 5 9 9 C 1.53035 * 109.52236 * 174.15717 * 8 7 6 10 10 C 1.53125 * 109.27823 * 59.17954 * 9 8 7 11 11 C 1.53121 * 109.15934 * 302.34308 * 10 9 8 12 12 H 1.08998 * 109.54022 * 297.69602 * 11 10 9 13 13 C 1.50703 * 109.50377 * 177.59311 * 11 10 9 14 14 H 1.07996 * 120.00314 * 240.19708 * 13 11 10 15 15 C 1.37882 * 119.99653 * 60.19951 * 13 11 10 16 16 N 1.31508 * 119.99994 * 0.02562 * 15 13 11 17 17 Si 1.86799 * 119.99745 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47056 * 359.97438 * 17 15 13 19 19 H 1.48493 * 109.47256 * 120.00051 * 17 15 13 20 20 H 1.48500 * 109.47021 * 239.99917 * 17 15 13 21 21 C 1.46849 * 111.00294 * 75.77268 * 7 6 5 22 22 C 1.53175 * 109.03493 * 303.01996 * 5 4 2 23 23 C 1.53098 * 109.16562 * 56.97597 * 22 5 4 24 24 H 1.08999 * 109.47605 * 62.38756 * 23 22 5 25 25 C 1.52998 * 109.48249 * 182.40561 * 23 22 5 26 26 O 1.42894 * 109.41636 * 302.39296 * 23 22 5 27 27 H 1.08992 * 109.47104 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46620 * 300.03264 * 1 2 3 29 29 H 1.09006 * 109.47008 * 60.02787 * 1 2 3 30 30 H 1.09001 * 109.52511 * 57.52540 * 4 2 1 31 31 H 1.08993 * 109.52956 * 177.66110 * 4 2 1 32 32 H 1.09003 * 109.54146 * 62.97198 * 5 4 2 33 33 H 1.09007 * 109.47283 * 304.77994 * 6 5 4 34 34 H 1.08995 * 109.47266 * 64.78189 * 6 5 4 35 35 H 1.09001 * 109.46149 * 294.17242 * 8 7 6 36 36 H 1.08999 * 109.46389 * 54.14330 * 8 7 6 37 37 H 1.08997 * 109.50788 * 299.23714 * 9 8 7 38 38 H 1.08994 * 109.53951 * 179.13571 * 9 8 7 39 39 H 1.09006 * 109.52316 * 182.43953 * 10 9 8 40 40 H 1.08996 * 109.52388 * 62.24958 * 10 9 8 41 41 H 0.97003 * 119.99879 * 180.02562 * 16 15 13 42 42 H 1.09003 * 109.46143 * 305.85965 * 21 7 6 43 43 H 1.09000 * 109.45933 * 65.83162 * 21 7 6 44 44 H 1.08999 * 109.52597 * 176.88485 * 22 5 4 45 45 H 1.09002 * 109.52164 * 297.07344 * 22 5 4 46 46 H 1.09007 * 109.46610 * 60.00424 * 25 23 22 47 47 H 1.08992 * 109.47217 * 180.02562 * 25 23 22 48 48 H 1.08997 * 109.47302 * 300.00687 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0406 -0.7222 -1.2495 5 6 1.5757 -2.1814 -1.2121 6 6 2.1467 -2.9315 -2.4171 7 7 1.6087 -4.2983 -2.4430 8 6 2.4527 -5.1807 -3.2587 9 6 1.9469 -6.6205 -3.1451 10 6 0.4944 -6.6854 -3.6255 11 6 -0.3542 -5.7215 -2.7915 12 1 -0.3367 -6.0310 -1.7466 13 6 -1.7741 -5.7353 -3.2966 14 1 -2.2237 -4.8266 -3.6688 15 6 -2.4991 -6.9080 -3.2834 16 7 -1.9517 -8.0144 -2.8297 17 14 -4.2587 -6.9253 -3.9101 18 1 -4.6365 -5.5621 -4.3622 19 1 -4.3698 -7.8731 -5.0477 20 1 -5.1689 -7.3541 -2.8179 21 6 0.2183 -4.3078 -2.9154 22 6 2.0764 -2.8322 0.0809 23 6 1.5646 -2.0284 1.2791 24 1 0.4750 -2.0551 1.2960 25 6 2.1099 -2.6372 2.5725 26 8 2.0066 -0.6742 1.1664 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3632 0.5144 0.8897 29 1 -0.3633 0.5134 -0.8903 30 1 1.6420 -0.2358 -2.1399 31 1 3.1297 -0.6865 -1.2715 32 1 0.4867 -2.2180 -1.2423 33 1 1.8661 -2.4132 -3.3341 34 1 3.2332 -2.9701 -2.3396 35 1 2.4110 -4.8621 -4.3003 36 1 3.4821 -5.1284 -2.9040 37 1 2.0013 -6.9445 -2.1059 38 1 2.5637 -7.2734 -3.7626 39 1 0.1161 -7.7007 -3.5057 40 1 0.4449 -6.3988 -4.6759 41 1 -2.4617 -8.8395 -2.8208 42 1 -0.3751 -3.6214 -2.3113 43 1 0.1871 -3.9934 -3.9586 44 1 1.7036 -3.8546 0.1422 45 1 3.1664 -2.8400 0.0864 46 1 3.1995 -2.6100 2.5556 47 1 1.7450 -2.0651 3.4254 48 1 1.7735 -3.6705 2.6578 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260116758.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:21 Heat of formation + Delta-G solvation = -72.768926 kcal Electronic energy + Delta-G solvation = -23805.269289 eV Core-core repulsion = 20665.705587 eV Total energy + Delta-G solvation = -3139.563702 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.97829 -38.11299 -34.82788 -33.32530 -33.00558 -31.32424 -29.85872 -29.42155 -26.56811 -25.71802 -24.94939 -22.92034 -22.12554 -21.31543 -20.45587 -19.11526 -18.57202 -16.42650 -16.24098 -15.88453 -15.30974 -14.96136 -14.55506 -14.34587 -14.04387 -13.69131 -13.27235 -13.02420 -12.86554 -12.63516 -12.54704 -12.23710 -12.11185 -11.93990 -11.87672 -11.57283 -11.51275 -11.45351 -10.97419 -10.96248 -10.76067 -10.64025 -10.52364 -10.33570 -10.09227 -9.87297 -9.79810 -9.43499 -9.28816 -8.97783 -8.67716 -8.30125 -7.62078 -5.97389 -4.03319 3.29308 3.37581 3.40967 3.82082 4.36056 4.49964 4.79988 4.82951 4.97654 5.04186 5.20301 5.32860 5.33191 5.40697 5.45237 5.52660 5.56496 5.66619 5.73595 5.78719 5.80501 5.85152 5.94398 5.98406 6.03195 6.08374 6.10562 6.16136 6.21558 6.26721 6.32354 6.43950 6.51556 6.52896 6.60296 6.73538 6.77373 7.00310 7.23289 7.37257 7.41968 7.69955 7.76385 7.85850 8.09397 8.18290 8.49177 9.01066 9.61055 11.08645 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.017755 B = 0.004621 C = 0.004235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.606992 B = 6058.230263 C = 6609.461956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.091 3.909 3 H 0.096 0.904 4 C -0.144 4.144 5 C -0.084 4.084 6 C 0.062 3.938 7 N -0.536 5.536 8 C 0.064 3.936 9 C -0.117 4.117 10 C -0.110 4.110 11 C 0.055 3.945 12 H 0.033 0.967 13 C -0.513 4.513 14 H 0.053 0.947 15 C 0.063 3.937 16 N -0.888 5.888 17 Si 0.888 3.112 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.284 1.284 21 C 0.068 3.932 22 C -0.130 4.130 23 C 0.080 3.920 24 H 0.060 0.940 25 C -0.142 4.142 26 O -0.380 6.380 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.027 0.973 34 H 0.062 0.938 35 H 0.021 0.979 36 H 0.056 0.944 37 H 0.060 0.940 38 H 0.045 0.955 39 H 0.090 0.910 40 H 0.028 0.972 41 H 0.259 0.741 42 H 0.058 0.942 43 H 0.016 0.984 44 H 0.088 0.912 45 H 0.062 0.938 46 H 0.059 0.941 47 H 0.057 0.943 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.997 12.025 4.953 15.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.033 3.967 3 H 0.114 0.886 4 C -0.183 4.183 5 C -0.103 4.103 6 C -0.066 4.066 7 N -0.260 5.260 8 C -0.064 4.064 9 C -0.155 4.155 10 C -0.149 4.149 11 C 0.036 3.964 12 H 0.052 0.948 13 C -0.552 4.552 14 H 0.071 0.929 15 C -0.138 4.138 16 N -0.527 5.527 17 Si 0.716 3.284 18 H -0.199 1.199 19 H -0.211 1.211 20 H -0.210 1.210 21 C -0.059 4.059 22 C -0.168 4.168 23 C 0.023 3.977 24 H 0.078 0.922 25 C -0.200 4.200 26 O -0.300 6.300 27 H 0.086 0.914 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.045 0.955 34 H 0.081 0.919 35 H 0.039 0.961 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.063 0.937 39 H 0.108 0.892 40 H 0.047 0.953 41 H 0.069 0.931 42 H 0.076 0.924 43 H 0.034 0.966 44 H 0.106 0.894 45 H 0.080 0.920 46 H 0.078 0.922 47 H 0.076 0.924 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 9.077 11.734 5.592 15.854 hybrid contribution -1.169 0.139 -1.561 1.955 sum 7.908 11.873 4.031 14.824 Atomic orbital electron populations 1.22473 0.96503 1.03263 1.02310 1.22069 0.93419 0.95868 0.85306 0.88632 1.22224 1.01472 0.96437 0.98117 1.21199 1.01027 0.92856 0.95172 1.22064 0.98620 0.89895 0.96060 1.61947 1.03501 1.07005 1.53575 1.22013 0.95535 0.94547 0.94261 1.21669 0.98987 0.93684 1.01128 1.21649 0.91247 1.04394 0.97563 1.18657 0.92934 0.88087 0.96682 0.94838 1.21188 0.97364 0.94904 1.41769 0.92910 1.24925 0.97902 0.95692 0.95275 1.69901 1.36470 0.99642 1.46687 0.86601 0.85245 0.77972 0.78552 1.19895 1.21100 1.21039 1.22324 0.86224 1.01297 0.96007 1.22107 1.00896 1.00686 0.93093 1.22169 0.98185 0.81840 0.95555 0.92227 1.21743 1.01718 1.00541 0.95961 1.87921 1.73898 1.25112 1.43057 0.91362 0.92159 0.91658 0.91301 0.91374 0.90486 0.95459 0.91920 0.96118 0.92578 0.92125 0.93650 0.89190 0.95269 0.93139 0.92396 0.96555 0.89354 0.91967 0.92150 0.92383 0.90923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.06 8.65 37.16 0.32 -1.73 16 2 C 0.09 1.03 3.91 -26.68 -0.10 0.92 16 3 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 4 C -0.14 -1.66 4.93 -26.59 -0.13 -1.79 16 5 C -0.08 -1.14 2.02 -90.44 -0.18 -1.32 16 6 C 0.06 0.92 4.40 -3.82 -0.02 0.91 16 7 N -0.54 -9.62 4.12 -234.67 -0.97 -10.59 16 8 C 0.06 1.13 5.43 -3.84 -0.02 1.11 16 9 C -0.12 -2.27 6.09 -26.65 -0.16 -2.44 16 10 C -0.11 -2.61 5.03 -26.60 -0.13 -2.74 16 11 C 0.06 1.37 2.26 -91.69 -0.21 1.16 16 12 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 13 C -0.51 -13.99 8.56 -34.44 -0.29 -14.29 16 14 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 15 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 16 N -0.89 -25.24 11.36 55.43 0.63 -24.61 16 17 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 18 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 C 0.07 1.43 4.51 -3.83 -0.02 1.42 16 22 C -0.13 -1.77 4.55 -26.59 -0.12 -1.89 16 23 C 0.08 1.02 2.94 -26.68 -0.08 0.94 16 24 H 0.06 0.79 6.34 -51.93 -0.33 0.46 16 25 C -0.14 -1.60 9.56 37.16 0.36 -1.24 16 26 O -0.38 -5.02 10.24 -35.23 -0.36 -5.38 16 27 H 0.07 0.84 4.98 -51.93 -0.26 0.58 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.08 1.17 5.19 -51.93 -0.27 0.90 16 33 H 0.03 0.41 8.00 -51.92 -0.42 0.00 16 34 H 0.06 0.87 7.79 -51.93 -0.40 0.46 16 35 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.06 0.87 7.93 -51.93 -0.41 0.45 16 37 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 38 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.09 2.38 6.17 -51.93 -0.32 2.06 16 40 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 42 H 0.06 1.20 6.65 -51.93 -0.35 0.86 16 43 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.09 1.37 7.86 -51.93 -0.41 0.96 16 45 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 46 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 48 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 353.81 15.07 5.33 5.33 Total: -1.00 -27.88 353.81 -10.32 -38.20 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -9.05 Total: 0.21 kcal Atomic # 6 Polarization: -18.45 SS G_CDS: -0.89 Total: -19.34 kcal Atomic # 7 Polarization: -34.86 SS G_CDS: -0.34 Total: -35.20 kcal Atomic # 8 Polarization: -5.02 SS G_CDS: -0.36 Total: -5.38 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -27.88 -10.32 -38.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260116758.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.574 kcal (2) G-P(sol) polarization free energy of solvation -27.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds