Wall clock time and date at job start Tue Mar 31 2020 05:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52729 * 1 3 3 H 1.10927 * 107.00328 * 2 1 4 4 C 1.52762 * 110.41986 * 243.85182 * 2 1 3 5 5 C 1.53006 * 109.83802 * 284.49003 * 4 2 1 6 6 H 1.08790 * 110.26448 * 61.84324 * 5 4 2 7 7 C 1.53271 * 109.27215 * 181.67391 * 5 4 2 8 8 N 1.46896 * 109.46837 * 184.99795 * 7 5 4 9 9 C 1.46847 * 111.00076 * 66.05039 * 8 7 5 10 10 C 1.53036 * 109.52472 * 185.83665 * 9 8 7 11 11 C 1.53123 * 109.28024 * 300.82066 * 10 9 8 12 12 C 1.53113 * 109.16205 * 57.65014 * 11 10 9 13 13 H 1.08998 * 109.50331 * 62.28638 * 12 11 10 14 14 C 1.50693 * 109.50481 * 182.36889 * 12 11 10 15 15 H 1.08007 * 120.00240 * 120.00659 * 14 12 11 16 16 C 1.37879 * 120.00202 * 300.00150 * 14 12 11 17 17 N 1.31517 * 119.99794 * 0.02562 * 16 14 12 18 18 Si 1.86799 * 120.00476 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47359 * 89.99494 * 18 16 14 20 20 H 1.48498 * 109.47312 * 210.00277 * 18 16 14 21 21 H 1.48506 * 109.46474 * 329.99761 * 18 16 14 22 22 C 1.46847 * 110.99872 * 190.25734 * 8 7 5 23 23 C 1.52930 * 108.72273 * 300.90747 * 5 4 2 24 24 C 1.52555 * 110.42218 * 57.75458 * 23 5 4 25 25 H 1.11032 * 107.01708 * 194.08763 * 24 23 5 26 26 C 1.52866 * 110.30693 * 78.31323 * 24 23 5 27 27 O 1.41092 * 112.82272 * 312.11573 * 24 23 5 28 28 H 1.09001 * 109.47128 * 302.10908 * 1 2 3 29 29 H 1.08999 * 109.47306 * 62.10937 * 1 2 3 30 30 H 1.09003 * 109.47193 * 182.11036 * 1 2 3 31 31 H 1.09162 * 109.53057 * 44.69049 * 4 2 1 32 32 H 1.09156 * 109.54290 * 164.26567 * 4 2 1 33 33 H 1.08993 * 109.47190 * 305.00165 * 7 5 4 34 34 H 1.09007 * 109.46702 * 65.00123 * 7 5 4 35 35 H 1.08996 * 109.46229 * 305.85126 * 9 8 7 36 36 H 1.08999 * 109.46195 * 65.83227 * 9 8 7 37 37 H 1.09000 * 109.50504 * 60.76033 * 10 9 8 38 38 H 1.09002 * 109.50365 * 180.88048 * 10 9 8 39 39 H 1.08991 * 109.52540 * 177.56260 * 11 10 9 40 40 H 1.09002 * 109.51774 * 297.75068 * 11 10 9 41 41 H 0.96996 * 120.00421 * 180.02562 * 17 16 14 42 42 H 1.09007 * 109.46269 * 294.17629 * 22 8 7 43 43 H 1.09003 * 109.46575 * 54.14487 * 22 8 7 44 44 H 1.09283 * 109.31856 * 297.21318 * 23 5 4 45 45 H 1.09277 * 109.32908 * 178.31911 * 23 5 4 46 46 H 1.09003 * 109.47317 * 295.93440 * 26 24 23 47 47 H 1.09002 * 109.47215 * 55.93055 * 26 24 23 48 48 H 1.09002 * 109.47223 * 175.93120 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5273 0.0000 0.0000 3 1 1.8517 1.0608 0.0000 4 6 2.0603 -0.6309 -1.2851 5 6 1.9039 -2.1516 -1.2206 6 1 0.8526 -2.4192 -1.1388 7 6 2.4803 -2.7740 -2.4972 8 7 2.2257 -4.2207 -2.4946 9 6 0.7874 -4.5021 -2.5874 10 6 0.5497 -6.0063 -2.4359 11 6 1.3067 -6.7514 -3.5388 12 6 2.7951 -6.4033 -3.4501 13 1 3.1907 -6.7384 -2.4914 14 6 3.5392 -7.0869 -4.5681 15 1 4.0841 -6.4996 -5.2925 16 6 3.5246 -8.4621 -4.6663 17 7 2.8607 -9.1772 -3.7845 18 14 4.4475 -9.3095 -6.0517 19 1 5.8358 -9.6037 -5.6144 20 1 3.7594 -10.5781 -6.4016 21 1 4.4809 -8.4203 -7.2407 22 6 2.9678 -4.8875 -3.5721 23 6 2.6780 -2.6737 -0.0094 24 6 2.1740 -2.0127 1.2698 25 1 2.9230 -2.2240 2.0616 26 6 0.8631 -2.6579 1.7194 27 8 2.0628 -0.6109 1.1543 28 1 -0.3633 0.5462 0.8705 29 1 -0.3634 0.4807 -0.9083 30 1 -0.3634 -1.0270 0.0378 31 1 1.5022 -0.2446 -2.1400 32 1 3.1156 -0.3791 -1.4051 33 1 2.0048 -2.3229 -3.3680 34 1 3.5548 -2.5942 -2.5359 35 1 0.2613 -3.9697 -1.7951 36 1 0.4145 -4.1715 -3.5568 37 1 0.9099 -6.3353 -1.4612 38 1 -0.5165 -6.2165 -2.5205 39 1 1.1754 -7.8255 -3.4090 40 1 0.9199 -6.4513 -4.5127 41 1 2.8506 -10.1447 -3.8533 42 1 2.5845 -4.5549 -4.5369 43 1 4.0254 -4.6351 -3.4950 44 1 3.7411 -2.4558 -0.1384 45 1 2.5484 -3.7563 0.0634 46 1 0.0929 -2.4764 0.9698 47 1 1.0087 -3.7317 1.8381 48 1 0.5532 -2.2259 2.6710 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260116761.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:49 Heat of formation + Delta-G solvation = -71.363737 kcal Electronic energy + Delta-G solvation = -23748.798118 eV Core-core repulsion = 20609.295350 eV Total energy + Delta-G solvation = -3139.502768 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.00913 -38.13968 -34.97775 -33.39463 -33.00343 -31.45773 -30.00070 -29.63661 -26.27290 -25.92276 -24.96134 -22.89044 -22.65559 -21.70135 -20.51849 -18.59088 -18.41020 -16.52206 -16.34965 -15.85737 -15.33339 -14.81265 -14.73829 -14.48813 -14.01903 -13.89711 -13.47367 -13.25092 -12.91975 -12.81102 -12.59446 -12.35740 -12.32883 -12.10255 -11.81891 -11.74161 -11.29642 -11.23963 -10.95300 -10.89600 -10.80174 -10.67177 -10.49559 -10.27463 -10.06357 -9.87808 -9.77799 -9.49998 -9.40892 -8.97070 -8.69351 -8.29303 -7.62870 -5.96779 -4.02920 3.30975 3.37707 3.40570 3.65142 4.35052 4.50678 4.67548 4.71745 4.84395 4.96166 5.03848 5.19290 5.31395 5.33223 5.40380 5.44840 5.47381 5.60182 5.67221 5.71913 5.80710 5.82873 5.85880 5.86712 5.95828 5.97367 6.08802 6.13348 6.19521 6.27443 6.29561 6.41493 6.42289 6.51160 6.52489 6.72458 6.76455 6.98188 7.23002 7.41630 7.67624 7.68910 7.76372 7.84785 8.09653 8.18632 8.49363 9.01171 9.61356 11.09102 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.032420 B = 0.003738 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.466707 B = 7489.494276 C = 7641.570151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.101 3.899 3 H 0.086 0.914 4 C -0.147 4.147 5 C -0.082 4.082 6 H 0.074 0.926 7 C 0.060 3.940 8 N -0.535 5.535 9 C 0.062 3.938 10 C -0.117 4.117 11 C -0.110 4.110 12 C 0.056 3.944 13 H 0.034 0.966 14 C -0.515 4.515 15 H 0.053 0.947 16 C 0.063 3.937 17 N -0.888 5.888 18 Si 0.890 3.110 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.275 1.275 22 C 0.068 3.932 23 C -0.135 4.135 24 C 0.097 3.903 25 H 0.087 0.913 26 C -0.179 4.179 27 O -0.381 6.381 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.024 0.976 34 H 0.069 0.931 35 H 0.058 0.942 36 H 0.020 0.980 37 H 0.060 0.940 38 H 0.044 0.956 39 H 0.090 0.910 40 H 0.028 0.972 41 H 0.259 0.741 42 H 0.017 0.983 43 H 0.057 0.943 44 H 0.064 0.936 45 H 0.090 0.910 46 H 0.057 0.943 47 H 0.068 0.932 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.770 15.802 7.853 18.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.044 3.956 3 H 0.104 0.896 4 C -0.185 4.185 5 C -0.101 4.101 6 H 0.092 0.908 7 C -0.068 4.068 8 N -0.259 5.259 9 C -0.066 4.066 10 C -0.154 4.154 11 C -0.148 4.148 12 C 0.037 3.963 13 H 0.052 0.948 14 C -0.554 4.554 15 H 0.071 0.929 16 C -0.138 4.138 17 N -0.527 5.527 18 Si 0.718 3.282 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.200 1.200 22 C -0.059 4.059 23 C -0.173 4.173 24 C 0.039 3.961 25 H 0.105 0.895 26 C -0.236 4.236 27 O -0.300 6.300 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.043 0.957 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.038 0.962 37 H 0.078 0.922 38 H 0.063 0.937 39 H 0.109 0.891 40 H 0.047 0.953 41 H 0.069 0.931 42 H 0.035 0.965 43 H 0.076 0.924 44 H 0.083 0.917 45 H 0.109 0.891 46 H 0.076 0.924 47 H 0.087 0.913 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.576 15.521 8.465 18.262 hybrid contribution 0.015 -0.394 -1.911 1.951 sum -4.561 15.128 6.554 17.106 Atomic orbital electron populations 1.22447 0.96692 1.02703 1.02019 1.21779 0.92658 0.96116 0.85088 0.89592 1.22201 1.02102 0.96320 0.97861 1.21066 1.00389 0.93278 0.95354 0.90761 1.22165 1.00343 0.89099 0.95234 1.61967 1.08318 1.07500 1.48111 1.22059 0.88546 0.97703 0.98301 1.21668 0.98653 0.93723 1.01401 1.21647 0.96866 1.02151 0.94170 1.18648 0.92589 0.87536 0.97537 0.94821 1.21156 1.30974 0.91460 1.11766 0.92922 1.24928 0.95413 0.97470 0.95993 1.69889 1.41740 1.05775 1.35313 0.86638 0.79964 0.79020 0.82612 1.20705 1.21280 1.20048 1.22300 0.96109 0.97948 0.89515 1.22045 0.99768 1.02284 0.93209 1.21901 0.96648 0.80050 0.97473 0.89484 1.22453 0.98511 1.01233 1.01403 1.86665 1.82497 1.20933 1.39885 0.92204 0.91829 0.92042 0.91163 0.91224 0.95738 0.91274 0.92402 0.96175 0.92161 0.93716 0.89146 0.95283 0.93085 0.96490 0.92401 0.91725 0.89128 0.92431 0.91328 0.92494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.69 9.21 37.02 0.34 -1.34 16 2 C 0.10 1.05 3.36 -26.99 -0.09 0.96 16 3 H 0.09 0.79 8.29 -50.82 -0.42 0.37 16 4 C -0.15 -1.55 4.80 -26.85 -0.13 -1.68 16 5 C -0.08 -1.02 2.04 -90.51 -0.18 -1.20 16 6 H 0.07 0.96 4.81 -52.05 -0.25 0.71 16 7 C 0.06 0.88 4.33 -3.69 -0.02 0.87 16 8 N -0.53 -9.56 4.19 -234.49 -0.98 -10.54 16 9 C 0.06 1.07 5.30 -3.83 -0.02 1.05 16 10 C -0.12 -2.26 6.09 -26.65 -0.16 -2.42 16 11 C -0.11 -2.60 5.02 -26.61 -0.13 -2.74 16 12 C 0.06 1.39 2.26 -91.69 -0.21 1.18 16 13 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 14 C -0.51 -14.11 8.57 -34.44 -0.30 -14.41 16 15 H 0.05 1.43 7.75 -52.48 -0.41 1.02 16 16 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 17 N -0.89 -25.30 11.35 55.43 0.63 -24.67 16 18 Si 0.89 21.26 29.54 -169.99 -5.02 16.23 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 C 0.07 1.44 4.68 -3.83 -0.02 1.42 16 23 C -0.14 -1.71 4.65 -26.99 -0.13 -1.84 16 24 C 0.10 1.12 3.35 -27.03 -0.09 1.03 16 25 H 0.09 0.95 8.29 -50.76 -0.42 0.53 16 26 C -0.18 -1.92 9.23 37.09 0.34 -1.58 16 27 O -0.38 -4.64 9.87 -34.60 -0.34 -4.98 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 30 H 0.06 0.62 5.12 -51.93 -0.27 0.35 16 31 H 0.07 0.68 8.04 -51.84 -0.42 0.27 16 32 H 0.07 0.74 8.15 -51.84 -0.42 0.32 16 33 H 0.02 0.36 8.12 -51.93 -0.42 -0.06 16 34 H 0.07 1.02 7.98 -51.93 -0.41 0.60 16 35 H 0.06 0.88 6.12 -51.93 -0.32 0.57 16 36 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 37 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.09 2.39 6.15 -51.93 -0.32 2.07 16 40 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 42 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 43 H 0.06 1.21 8.01 -51.93 -0.42 0.80 16 44 H 0.06 0.84 8.17 -51.77 -0.42 0.41 16 45 H 0.09 1.30 7.72 -51.77 -0.40 0.90 16 46 H 0.06 0.63 5.29 -51.93 -0.27 0.36 16 47 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 48 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 352.10 15.07 5.31 5.31 Total: -1.00 -27.87 352.10 -10.24 -38.11 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -8.95 Total: -0.40 kcal Atomic # 6 Polarization: -18.18 SS G_CDS: -0.88 Total: -19.06 kcal Atomic # 7 Polarization: -34.86 SS G_CDS: -0.35 Total: -35.21 kcal Atomic # 8 Polarization: -4.64 SS G_CDS: -0.34 Total: -4.98 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -27.87 -10.24 -38.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260116761.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.255 kcal (2) G-P(sol) polarization free energy of solvation -27.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds