Wall clock time and date at job start Tue Mar 31 2020 06:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46501 * 109.46596 * 2 1 4 4 C 1.46505 * 120.00064 * 264.44933 * 3 2 1 5 5 C 1.50704 * 109.47125 * 275.67907 * 4 3 2 6 6 H 1.07997 * 119.99853 * 359.97438 * 5 4 3 7 7 C 1.37876 * 119.99697 * 180.02562 * 5 4 3 8 8 N 1.31514 * 119.99798 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 119.99935 * 359.97438 * 7 5 4 10 10 H 1.48494 * 109.47445 * 89.99987 * 9 7 5 11 11 H 1.48502 * 109.46763 * 209.99996 * 9 7 5 12 12 H 1.48505 * 109.47303 * 329.99654 * 9 7 5 13 13 C 1.34779 * 119.99900 * 84.45734 * 3 2 1 14 14 O 1.21278 * 120.00082 * 3.84368 * 13 3 2 15 15 C 1.50701 * 120.00004 * 183.84229 * 13 3 2 16 16 C 1.52994 * 109.47099 * 168.44107 * 15 13 3 17 17 C 1.53000 * 109.47284 * 60.00247 * 16 15 13 18 18 C 1.53000 * 109.47189 * 59.99377 * 17 16 15 19 19 C 1.53000 * 109.47189 * 179.97438 * 18 17 16 20 20 C 1.53000 * 109.47189 * 180.02562 * 19 18 17 21 21 C 1.53000 * 109.47585 * 300.00550 * 19 18 17 22 22 C 1.52994 * 109.47516 * 300.00481 * 18 17 16 23 23 C 1.53002 * 109.47159 * 288.44329 * 15 13 3 24 24 H 1.08996 * 109.46780 * 304.89119 * 1 2 3 25 25 H 1.08994 * 109.47372 * 64.89449 * 1 2 3 26 26 H 1.08999 * 109.46917 * 184.89468 * 1 2 3 27 27 H 1.08997 * 109.47061 * 240.00589 * 2 1 3 28 28 H 1.08999 * 109.47153 * 119.99998 * 2 1 3 29 29 H 1.08997 * 109.46958 * 35.67887 * 4 3 2 30 30 H 1.08993 * 109.46751 * 155.67593 * 4 3 2 31 31 H 0.97005 * 119.99724 * 179.97438 * 8 7 5 32 32 H 1.09001 * 109.46871 * 48.43940 * 15 13 3 33 33 H 1.08993 * 109.47388 * 299.99972 * 16 15 13 34 34 H 1.09001 * 109.46759 * 179.97438 * 16 15 13 35 35 H 1.08997 * 109.47800 * 179.97438 * 17 16 15 36 36 H 1.09000 * 109.46916 * 300.00023 * 17 16 15 37 37 H 1.09001 * 109.47142 * 60.00289 * 18 17 16 38 38 H 1.09000 * 109.46916 * 60.00646 * 19 18 17 39 39 H 1.08999 * 109.46861 * 60.01007 * 20 19 18 40 40 H 1.09001 * 109.47059 * 179.97438 * 20 19 18 41 41 H 1.08998 * 109.47580 * 300.00440 * 20 19 18 42 42 H 1.08997 * 109.46799 * 59.99334 * 21 19 18 43 43 H 1.08992 * 109.47557 * 179.97438 * 21 19 18 44 44 H 1.09000 * 109.47072 * 300.00001 * 21 19 18 45 45 H 1.09003 * 109.47583 * 179.97438 * 22 18 17 46 46 H 1.09000 * 109.47163 * 299.99704 * 22 18 17 47 47 H 1.08992 * 109.47600 * 179.97438 * 23 15 13 48 48 H 1.09003 * 109.47176 * 59.99415 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3781 2.0310 -1.2628 5 6 3.7941 1.6678 -1.6290 6 1 4.3687 1.0183 -0.9853 7 6 4.3564 2.1656 -2.7854 8 7 5.5923 1.8490 -3.1047 9 14 3.3627 3.2895 -3.8983 10 1 3.5674 4.7014 -3.4862 11 1 3.8087 3.1145 -5.3039 12 1 1.9220 2.9461 -3.7898 13 6 2.1366 2.0542 1.1618 14 8 1.9057 1.4948 2.2128 15 6 2.5557 3.5017 1.1548 16 6 2.3367 4.1028 2.5446 17 6 3.1730 3.3346 3.5700 18 6 4.6538 3.4349 3.1985 19 6 5.4902 2.6674 4.2242 20 6 6.9710 2.7682 3.8530 21 6 5.2711 3.2689 5.6139 22 6 4.8728 2.8339 1.8087 23 6 4.0365 3.6021 0.7833 24 1 -0.3633 0.5878 0.8429 25 1 -0.3634 0.4360 -0.9305 26 1 -0.3633 -1.0239 0.0877 27 1 1.8934 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.7020 1.6959 -2.0494 30 1 2.2977 3.1122 -1.1508 31 1 5.9877 2.1989 -3.9185 32 1 1.9599 4.0490 0.4243 33 1 1.2818 4.0313 2.8093 34 1 2.6403 5.1496 2.5396 35 1 3.0174 3.7631 4.5601 36 1 2.8699 2.2877 3.5751 37 1 4.9570 4.4819 3.1934 38 1 5.1871 1.6203 4.2297 39 1 7.2738 3.8153 3.8479 40 1 7.5669 2.2217 4.5841 41 1 7.1275 2.3399 2.8630 42 1 4.2162 3.1975 5.8785 43 1 5.8666 2.7219 6.3447 44 1 5.5742 4.3160 5.6084 45 1 5.9277 2.9058 1.5437 46 1 4.5697 1.7869 1.8137 47 1 4.3396 4.6490 0.7778 48 1 4.1925 3.1738 -0.2069 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337942284.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:18 Heat of formation + Delta-G solvation = -68.120070 kcal Electronic energy + Delta-G solvation = -24484.277977 eV Core-core repulsion = 21344.915865 eV Total energy + Delta-G solvation = -3139.362112 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.14926 -37.73836 -35.34788 -34.50250 -32.70260 -30.96333 -30.15053 -28.99697 -27.62394 -26.90834 -23.90403 -22.62033 -22.13927 -21.77967 -20.19115 -19.40129 -17.70688 -17.04782 -16.18811 -15.58077 -15.30245 -14.55376 -14.21425 -14.02917 -13.71436 -13.33475 -13.22638 -13.04355 -12.91278 -12.82299 -12.46116 -12.13512 -12.00670 -11.91956 -11.72125 -11.65287 -11.46962 -11.14735 -10.94970 -10.81300 -10.77764 -10.64866 -10.53650 -10.43623 -10.31832 -10.20083 -10.05080 -9.61958 -9.42691 -9.27610 -8.70829 -8.55827 -7.69157 -6.24919 -4.23886 3.15238 3.23599 3.25429 3.42988 3.91397 4.23800 4.99916 5.03317 5.11691 5.17517 5.22658 5.44139 5.49816 5.57790 5.66144 5.77327 5.78338 5.82824 5.88337 5.88690 5.95405 6.00611 6.03470 6.10354 6.14155 6.19031 6.24146 6.27666 6.33754 6.37750 6.43326 6.44714 6.50645 6.57724 6.58659 6.70132 6.72686 6.75252 6.90106 6.94299 7.13344 7.30544 7.42499 7.48166 8.17074 8.44305 8.81593 9.03149 9.34368 10.86912 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.015346 B = 0.006631 C = 0.005406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.113021 B = 4221.764752 C = 5177.792026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.116 3.884 3 N -0.591 5.591 4 C 0.205 3.795 5 C -0.534 4.534 6 H 0.081 0.919 7 C 0.078 3.922 8 N -0.886 5.886 9 Si 0.866 3.134 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.264 1.264 13 C 0.527 3.473 14 O -0.563 6.563 15 C -0.102 4.102 16 C -0.095 4.095 17 C -0.132 4.132 18 C -0.079 4.079 19 C -0.091 4.091 20 C -0.148 4.148 21 C -0.146 4.146 22 C -0.105 4.105 23 C -0.136 4.136 24 H 0.053 0.947 25 H 0.051 0.949 26 H 0.057 0.943 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.029 0.971 30 H 0.033 0.967 31 H 0.267 0.733 32 H 0.082 0.918 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.048 0.952 36 H 0.104 0.896 37 H 0.058 0.942 38 H 0.067 0.933 39 H 0.050 0.950 40 H 0.046 0.954 41 H 0.061 0.939 42 H 0.056 0.944 43 H 0.046 0.954 44 H 0.049 0.951 45 H 0.060 0.940 46 H 0.059 0.941 47 H 0.054 0.946 48 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.002 3.400 9.344 10.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.007 4.007 3 N -0.321 5.321 4 C 0.083 3.917 5 C -0.572 4.572 6 H 0.099 0.901 7 C -0.126 4.126 8 N -0.524 5.524 9 Si 0.693 3.307 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.189 1.189 13 C 0.316 3.684 14 O -0.445 6.445 15 C -0.123 4.123 16 C -0.133 4.133 17 C -0.169 4.169 18 C -0.097 4.097 19 C -0.110 4.110 20 C -0.206 4.206 21 C -0.203 4.203 22 C -0.142 4.142 23 C -0.173 4.173 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.076 0.924 27 H 0.098 0.902 28 H 0.088 0.912 29 H 0.047 0.953 30 H 0.051 0.949 31 H 0.077 0.923 32 H 0.100 0.900 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.122 0.878 37 H 0.076 0.924 38 H 0.086 0.914 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.080 0.920 42 H 0.075 0.925 43 H 0.066 0.934 44 H 0.068 0.932 45 H 0.079 0.921 46 H 0.078 0.922 47 H 0.073 0.927 48 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -3.971 3.125 9.711 10.947 hybrid contribution -0.339 0.722 -0.908 1.208 sum -4.310 3.847 8.803 10.529 Atomic orbital electron populations 1.22117 0.97076 1.01295 1.01640 1.21212 0.93018 0.83796 1.02698 1.47955 1.63161 1.13236 1.07768 1.19886 0.96902 0.93412 0.81490 1.21299 0.96344 1.31529 1.07997 0.90073 1.24869 0.94712 0.95945 0.97115 1.69889 1.13217 1.44156 1.25091 0.86993 0.81161 0.81791 0.80766 1.19735 1.20910 1.18881 1.20451 0.76007 0.88871 0.83051 1.90443 1.52761 1.70545 1.30717 1.21243 0.99391 0.93349 0.98321 1.21310 0.99681 0.98335 0.93946 1.22012 0.93805 1.04399 0.96681 1.21203 0.95108 0.98631 0.94784 1.21117 0.95180 1.00084 0.94608 1.21894 0.95787 1.01296 1.01590 1.21875 1.01483 1.00349 0.96591 1.21495 0.99653 0.99830 0.93255 1.22021 0.91018 1.00448 1.03845 0.92773 0.92964 0.92401 0.90232 0.91205 0.95290 0.94904 0.92335 0.89955 0.92617 0.92489 0.93368 0.87767 0.92382 0.91425 0.93110 0.93447 0.92017 0.92457 0.93444 0.93169 0.92114 0.92187 0.92734 0.85618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.50 10.20 37.16 0.38 -2.12 16 2 C 0.12 2.10 6.12 -4.04 -0.02 2.08 16 3 N -0.59 -11.90 2.47 -175.05 -0.43 -12.33 16 4 C 0.20 4.40 3.71 -5.19 -0.02 4.38 16 5 C -0.53 -13.35 7.30 -34.44 -0.25 -13.60 16 6 H 0.08 2.29 8.06 -52.49 -0.42 1.87 16 7 C 0.08 2.01 5.47 -17.82 -0.10 1.92 16 8 N -0.89 -24.83 13.96 55.43 0.77 -24.06 16 9 Si 0.87 19.27 27.47 -169.99 -4.67 14.60 16 10 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.26 -5.61 6.54 56.52 0.37 -5.24 16 13 C 0.53 10.47 5.53 -10.98 -0.06 10.41 16 14 O -0.56 -11.89 12.96 5.56 0.07 -11.82 16 15 C -0.10 -1.82 2.17 -91.77 -0.20 -2.01 16 16 C -0.09 -1.50 5.19 -26.73 -0.14 -1.63 16 17 C -0.13 -2.09 4.56 -26.73 -0.12 -2.22 16 18 C -0.08 -1.21 1.77 -90.62 -0.16 -1.37 16 19 C -0.09 -1.28 2.51 -90.62 -0.23 -1.51 16 20 C -0.15 -1.95 8.84 37.16 0.33 -1.62 16 21 C -0.15 -1.75 8.84 37.16 0.33 -1.42 16 22 C -0.10 -1.89 4.63 -26.73 -0.12 -2.01 16 23 C -0.14 -2.54 5.18 -26.73 -0.14 -2.68 16 24 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.08 1.44 8.03 -51.93 -0.42 1.02 16 28 H 0.07 1.30 7.54 -51.93 -0.39 0.91 16 29 H 0.03 0.62 7.17 -51.93 -0.37 0.25 16 30 H 0.03 0.69 5.01 -51.93 -0.26 0.43 16 31 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 32 H 0.08 1.41 6.93 -51.93 -0.36 1.05 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.05 0.69 6.43 -51.93 -0.33 0.35 16 36 H 0.10 1.94 5.12 -51.93 -0.27 1.67 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.88 6.43 -51.93 -0.33 0.55 16 42 H 0.06 0.69 6.43 -51.93 -0.33 0.36 16 43 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.06 1.09 6.43 -51.93 -0.33 0.76 16 46 H 0.06 1.23 7.22 -51.93 -0.37 0.85 16 47 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 48 H 0.13 2.76 3.97 -51.93 -0.21 2.55 16 LS Contribution 350.41 15.07 5.28 5.28 Total: -1.00 -26.93 350.41 -8.15 -35.08 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -8.65 Total: 6.67 kcal Atomic # 6 Polarization: -12.90 SS G_CDS: -0.53 Total: -13.43 kcal Atomic # 7 Polarization: -36.73 SS G_CDS: 0.34 Total: -36.39 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: 0.07 Total: -11.82 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -4.67 Total: 14.60 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -26.93 -8.15 -35.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337942284.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.039 kcal (2) G-P(sol) polarization free energy of solvation -26.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds