Wall clock time and date at job start Tue Mar 31 2020 06:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46924 * 2 1 4 4 C 1.53001 * 109.47129 * 119.99706 * 2 1 3 5 5 C 1.53000 * 109.46978 * 60.00327 * 4 2 1 6 6 C 1.53001 * 109.47300 * 180.02562 * 5 4 2 7 7 C 1.53005 * 109.46757 * 300.00210 * 6 5 4 8 8 C 1.50701 * 109.46953 * 180.02562 * 7 6 5 9 9 O 1.21278 * 119.99827 * 341.48342 * 8 7 6 10 10 N 1.34771 * 119.99821 * 161.48461 * 8 7 6 11 11 C 1.46508 * 119.99894 * 184.13258 * 10 8 7 12 12 C 1.46499 * 120.00550 * 4.13647 * 10 8 7 13 13 H 1.09010 * 109.46516 * 6.27688 * 12 10 8 14 14 C 1.52992 * 109.47587 * 126.27668 * 12 10 8 15 15 C 1.50705 * 109.47093 * 246.28580 * 12 10 8 16 16 H 1.07995 * 119.99772 * 359.97438 * 15 12 10 17 17 C 1.37877 * 119.99802 * 179.97438 * 15 12 10 18 18 N 1.31514 * 119.99738 * 179.97438 * 17 15 12 19 19 Si 1.86794 * 120.00026 * 359.97438 * 17 15 12 20 20 H 1.48503 * 109.47370 * 90.00644 * 19 17 15 21 21 H 1.48504 * 109.47090 * 210.00053 * 19 17 15 22 22 H 1.48494 * 109.47337 * 329.99952 * 19 17 15 23 23 C 1.53000 * 109.47387 * 59.99843 * 7 6 5 24 24 C 1.52997 * 109.47194 * 180.02562 * 4 2 1 25 25 H 1.08998 * 109.47426 * 300.00387 * 1 2 3 26 26 H 1.08998 * 109.46879 * 60.00364 * 1 2 3 27 27 H 1.09005 * 109.46792 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47176 * 240.00069 * 2 1 3 29 29 H 1.09000 * 109.47045 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.47314 * 300.00012 * 3 2 1 31 31 H 1.08998 * 109.47386 * 59.99588 * 3 2 1 32 32 H 1.08998 * 109.46890 * 300.00234 * 4 2 1 33 33 H 1.08998 * 109.47386 * 60.00211 * 5 4 2 34 34 H 1.09000 * 109.47045 * 300.00005 * 5 4 2 35 35 H 1.08993 * 109.47633 * 179.97438 * 6 5 4 36 36 H 1.08998 * 109.46896 * 59.99707 * 6 5 4 37 37 H 1.09001 * 109.46757 * 299.99885 * 7 6 5 38 38 H 1.09003 * 109.46756 * 274.74279 * 11 10 8 39 39 H 1.09002 * 109.46932 * 34.74457 * 11 10 8 40 40 H 1.09001 * 109.46857 * 154.74083 * 11 10 8 41 41 H 1.09000 * 109.47153 * 60.00551 * 14 12 10 42 42 H 1.08999 * 109.47345 * 179.97438 * 14 12 10 43 43 H 1.08996 * 109.47247 * 300.00254 * 14 12 10 44 44 H 0.97001 * 120.00259 * 180.02562 * 18 17 15 45 45 H 1.08998 * 109.47386 * 59.99817 * 23 7 6 46 46 H 1.09000 * 109.47045 * 180.02562 * 23 7 6 47 47 H 1.09001 * 109.46860 * 300.00209 * 24 4 2 48 48 H 1.09001 * 109.47386 * 59.99745 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5301 -2.1637 1.2493 6 6 2.0395 -2.8848 2.4989 7 6 3.5696 -2.8847 2.4995 8 6 4.0714 -3.5954 3.7300 9 8 3.3341 -3.7588 4.6790 10 7 5.3395 -4.0495 3.7758 11 6 5.8005 -4.8193 4.9339 12 6 6.2570 -3.7734 2.6675 13 1 5.7762 -3.1011 1.9568 14 6 7.5287 -3.1179 3.2094 15 6 6.6125 -5.0645 1.9762 16 1 6.1969 -5.9973 2.3275 17 6 7.4683 -5.0546 0.8952 18 7 7.7790 -6.1813 0.2922 19 14 8.1865 -3.4410 0.2873 20 1 9.4681 -3.1741 0.9884 21 1 8.4311 -3.5277 -1.1749 22 1 7.2314 -2.3383 0.5647 23 6 4.0795 -1.4421 2.4995 24 6 3.5700 -0.7206 1.2496 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6766 -0.2073 2.1392 33 1 1.8934 -2.6776 0.3594 34 1 0.4401 -2.1637 1.2492 35 1 1.6759 -3.9123 2.4992 36 1 1.6758 -2.3708 3.3886 37 1 3.9332 -3.3986 1.6097 38 1 6.1318 -4.1359 5.7158 39 1 4.9827 -5.4336 5.3108 40 1 6.6299 -5.4611 4.6368 41 1 8.0095 -3.7902 3.9201 42 1 8.2115 -2.9129 2.3849 43 1 7.2715 -2.1842 3.7094 44 1 8.3814 -6.1745 -0.4680 45 1 3.7158 -0.9281 3.3892 46 1 5.1695 -1.4421 2.4995 47 1 3.9337 -1.2342 0.3596 48 1 3.9330 0.3071 1.2498 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337942711.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:25 Heat of formation + Delta-G solvation = -67.697655 kcal Electronic energy + Delta-G solvation = -24015.165476 eV Core-core repulsion = 20875.821681 eV Total energy + Delta-G solvation = -3139.343795 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 3.39 seconds Orbital eigenvalues (eV) -39.99332 -38.28253 -35.76726 -34.75014 -32.57942 -30.77134 -30.12200 -29.81205 -27.21457 -26.45370 -25.18280 -23.31151 -22.22075 -21.54786 -20.11857 -19.67477 -18.09574 -16.99614 -16.41542 -15.71994 -15.17999 -14.72592 -14.53321 -14.21488 -14.04429 -13.64084 -13.31711 -13.19208 -13.16097 -12.91031 -12.41931 -12.31526 -12.20517 -12.08927 -11.99844 -11.52587 -11.43950 -11.30709 -11.27255 -11.11687 -11.06932 -10.88759 -10.75513 -10.57231 -10.30374 -10.15109 -10.04879 -9.77305 -9.70544 -9.43514 -8.94869 -8.70925 -7.72446 -6.24050 -4.26061 3.13539 3.21608 3.26986 3.33247 3.88182 4.22725 4.65320 4.73583 4.82987 5.02018 5.06173 5.13680 5.23251 5.43698 5.47712 5.52241 5.56116 5.61449 5.70438 5.72707 5.76329 5.81044 5.88360 5.97406 6.00528 6.03737 6.07254 6.11012 6.16370 6.19777 6.21209 6.30121 6.32620 6.33626 6.36669 6.42151 6.47553 6.51328 6.56793 6.66505 6.72537 6.88614 7.33645 7.53883 8.11367 8.47302 8.79318 8.93943 9.35943 10.88703 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.015857 B = 0.005918 C = 0.004918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.337338 B = 4730.151732 C = 5691.759769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.093 4.093 3 C -0.149 4.149 4 C -0.081 4.081 5 C -0.115 4.115 6 C -0.096 4.096 7 C -0.106 4.106 8 C 0.516 3.484 9 O -0.571 6.571 10 N -0.587 5.587 11 C 0.094 3.906 12 C 0.223 3.777 13 H 0.057 0.943 14 C -0.164 4.164 15 C -0.533 4.533 16 H 0.080 0.920 17 C 0.077 3.923 18 N -0.891 5.891 19 Si 0.881 3.119 20 H -0.276 1.276 21 H -0.293 1.293 22 H -0.264 1.264 23 C -0.110 4.110 24 C -0.114 4.114 25 H 0.052 0.948 26 H 0.049 0.951 27 H 0.058 0.942 28 H 0.069 0.931 29 H 0.058 0.942 30 H 0.049 0.951 31 H 0.052 0.948 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.101 0.899 38 H 0.039 0.961 39 H 0.058 0.942 40 H 0.079 0.921 41 H 0.058 0.942 42 H 0.050 0.950 43 H 0.034 0.966 44 H 0.267 0.733 45 H 0.063 0.937 46 H 0.071 0.929 47 H 0.066 0.934 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.029 12.645 0.037 15.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.112 4.112 3 C -0.206 4.206 4 C -0.100 4.100 5 C -0.153 4.153 6 C -0.134 4.134 7 C -0.127 4.127 8 C 0.305 3.695 9 O -0.452 6.452 10 N -0.316 5.316 11 C -0.049 4.049 12 C 0.120 3.880 13 H 0.075 0.925 14 C -0.222 4.222 15 C -0.571 4.571 16 H 0.098 0.902 17 C -0.127 4.127 18 N -0.528 5.528 19 Si 0.711 3.289 20 H -0.203 1.203 21 H -0.221 1.221 22 H -0.189 1.189 23 C -0.148 4.148 24 C -0.152 4.152 25 H 0.071 0.929 26 H 0.068 0.932 27 H 0.077 0.923 28 H 0.088 0.912 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.119 0.881 38 H 0.058 0.942 39 H 0.077 0.923 40 H 0.097 0.903 41 H 0.077 0.923 42 H 0.069 0.931 43 H 0.053 0.947 44 H 0.077 0.923 45 H 0.081 0.919 46 H 0.089 0.911 47 H 0.084 0.916 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.272 12.452 0.380 15.530 hybrid contribution 0.792 0.622 -0.475 1.113 sum -8.481 13.074 -0.094 15.584 Atomic orbital electron populations 1.21893 0.95555 1.01855 1.01259 1.21157 0.95489 0.96028 0.98518 1.21897 1.01361 0.96102 1.01266 1.21218 0.95376 0.95834 0.97555 1.21667 1.00112 0.95051 0.98435 1.21313 0.93257 1.00847 0.97979 1.21305 0.96864 0.96673 0.97867 1.20533 0.81505 0.78903 0.88601 1.90582 1.56509 1.59694 1.38438 1.47908 1.11113 1.52043 1.20569 1.21421 1.00381 0.95450 0.87636 1.19494 0.86592 0.97256 0.84651 0.92524 1.22475 0.99754 0.99150 1.00776 1.21232 1.28839 0.93143 1.13878 0.90204 1.24899 0.95687 0.96129 0.95952 1.69876 1.35109 1.25923 1.21859 0.86961 0.80111 0.84501 0.77342 1.20329 1.22078 1.18876 1.21559 1.01032 0.93735 0.98463 1.21654 0.95017 1.00256 0.98249 0.92902 0.93167 0.92288 0.91206 0.92293 0.93146 0.92904 0.91314 0.91809 0.91745 0.91828 0.91384 0.88086 0.94211 0.92278 0.90275 0.92259 0.93124 0.94691 0.92333 0.91861 0.91069 0.91575 0.91675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 8.84 37.16 0.33 -1.01 16 2 C -0.09 -0.93 2.51 -90.62 -0.23 -1.16 16 3 C -0.15 -1.37 8.84 37.16 0.33 -1.04 16 4 C -0.08 -0.93 1.77 -90.62 -0.16 -1.10 16 5 C -0.12 -1.43 4.85 -26.73 -0.13 -1.56 16 6 C -0.10 -1.46 4.65 -26.73 -0.12 -1.59 16 7 C -0.11 -1.83 1.65 -91.77 -0.15 -1.98 16 8 C 0.52 10.57 6.85 -10.99 -0.08 10.50 16 9 O -0.57 -12.82 15.72 5.56 0.09 -12.73 16 10 N -0.59 -12.25 2.75 -175.25 -0.48 -12.73 16 11 C 0.09 1.80 9.24 59.85 0.55 2.36 16 12 C 0.22 4.86 1.48 -69.08 -0.10 4.76 16 13 H 0.06 1.22 3.45 -51.92 -0.18 1.04 16 14 C -0.16 -3.29 8.57 37.15 0.32 -2.97 16 15 C -0.53 -13.89 8.69 -34.44 -0.30 -14.19 16 16 H 0.08 2.33 8.06 -52.49 -0.42 1.90 16 17 C 0.08 2.06 5.45 -17.82 -0.10 1.96 16 18 N -0.89 -25.73 13.96 55.43 0.77 -24.96 16 19 Si 0.88 20.12 24.37 -169.99 -4.14 15.98 16 20 H -0.28 -6.19 6.87 56.52 0.39 -5.80 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.26 -5.59 6.53 56.52 0.37 -5.22 16 23 C -0.11 -1.67 4.85 -26.71 -0.13 -1.80 16 24 C -0.11 -1.46 4.86 -26.71 -0.13 -1.59 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.53 6.43 -51.93 -0.33 0.20 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.55 6.43 -51.93 -0.33 0.22 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.06 0.71 6.43 -51.93 -0.33 0.38 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.07 1.07 7.91 -51.93 -0.41 0.66 16 37 H 0.10 1.88 7.06 -51.93 -0.37 1.51 16 38 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.06 1.13 7.63 -51.93 -0.40 0.73 16 40 H 0.08 1.53 7.32 -51.93 -0.38 1.15 16 41 H 0.06 1.16 7.36 -51.93 -0.38 0.78 16 42 H 0.05 1.05 3.27 -51.93 -0.17 0.88 16 43 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 45 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 46 H 0.07 1.16 6.39 -51.93 -0.33 0.82 16 47 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 48 H 0.06 0.75 6.43 -51.93 -0.33 0.42 16 LS Contribution 350.59 15.07 5.28 5.28 Total: -1.00 -29.01 350.59 -7.21 -36.21 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -8.63 Total: 3.36 kcal Atomic # 6 Polarization: -10.32 SS G_CDS: -0.10 Total: -10.41 kcal Atomic # 7 Polarization: -37.98 SS G_CDS: 0.29 Total: -37.69 kcal Atomic # 8 Polarization: -12.82 SS G_CDS: 0.09 Total: -12.73 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -4.14 Total: 15.98 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -29.01 -7.21 -36.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337942711.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.483 kcal (2) G-P(sol) polarization free energy of solvation -29.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.39 seconds