Wall clock time and date at job start Tue Mar 31 2020 06:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47239 * 2 1 4 4 C 1.52995 * 109.47099 * 120.00545 * 2 1 3 5 5 C 1.52999 * 109.46978 * 179.97438 * 4 2 1 6 6 C 1.53005 * 109.47006 * 180.02562 * 5 4 2 7 7 C 1.52996 * 109.47098 * 60.00211 * 6 5 4 8 8 C 1.50701 * 109.47407 * 59.99997 * 7 6 5 9 9 O 1.21280 * 120.00001 * 348.15743 * 8 7 6 10 10 N 1.34776 * 119.99805 * 168.15458 * 8 7 6 11 11 C 1.46502 * 119.99479 * 184.46847 * 10 8 7 12 12 C 1.46491 * 120.00461 * 4.46553 * 10 8 7 13 13 H 1.09001 * 109.47310 * 358.03633 * 12 10 8 14 14 C 1.53000 * 109.47743 * 238.03752 * 12 10 8 15 15 C 1.50702 * 109.47319 * 118.03603 * 12 10 8 16 16 H 1.07998 * 119.99906 * 0.02562 * 15 12 10 17 17 C 1.37873 * 120.00367 * 180.02562 * 15 12 10 18 18 N 1.31518 * 120.00005 * 0.02562 * 17 15 12 19 19 Si 1.86799 * 120.00278 * 179.97438 * 17 15 12 20 20 H 1.48503 * 109.47053 * 179.97438 * 19 17 15 21 21 H 1.48495 * 109.47059 * 300.00173 * 19 17 15 22 22 H 1.48505 * 109.47116 * 60.00140 * 19 17 15 23 23 C 1.52999 * 109.47020 * 299.99780 * 7 6 5 24 24 C 1.52995 * 109.47303 * 60.00421 * 23 7 6 25 25 H 1.09006 * 109.47007 * 299.99670 * 1 2 3 26 26 H 1.09001 * 109.47688 * 59.99384 * 1 2 3 27 27 H 1.09003 * 109.47545 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.46548 * 240.00057 * 2 1 3 29 29 H 1.09003 * 109.47235 * 179.97438 * 3 2 1 30 30 H 1.08991 * 109.47687 * 300.00503 * 3 2 1 31 31 H 1.09006 * 109.46852 * 60.00235 * 3 2 1 32 32 H 1.08996 * 109.47104 * 299.99782 * 4 2 1 33 33 H 1.08999 * 109.47628 * 60.00247 * 5 4 2 34 34 H 1.09006 * 109.47345 * 299.99918 * 5 4 2 35 35 H 1.08996 * 109.47040 * 300.00099 * 6 5 4 36 36 H 1.09007 * 109.47034 * 179.97438 * 6 5 4 37 37 H 1.09003 * 109.47019 * 180.02562 * 7 6 5 38 38 H 1.09006 * 109.47044 * 275.17206 * 11 10 8 39 39 H 1.08992 * 109.47327 * 35.17459 * 11 10 8 40 40 H 1.09003 * 109.46908 * 155.17892 * 11 10 8 41 41 H 1.09008 * 109.46879 * 59.99609 * 14 12 10 42 42 H 1.08995 * 109.47546 * 180.02562 * 14 12 10 43 43 H 1.09001 * 109.47138 * 300.00209 * 14 12 10 44 44 H 0.96996 * 120.00274 * 180.02562 * 18 17 15 45 45 H 1.09003 * 109.47329 * 180.02562 * 23 7 6 46 46 H 1.08996 * 109.47302 * 300.00224 * 23 7 6 47 47 H 1.08994 * 109.47648 * 179.97438 * 24 23 7 48 48 H 1.09006 * 109.47013 * 59.99683 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2491 5 6 3.5699 -0.7219 1.2488 6 6 4.0799 -1.4438 2.4977 7 6 3.5695 -2.8861 2.4972 8 6 4.0713 -3.5963 1.2663 9 8 4.5820 -2.9631 0.3668 10 7 3.9525 -4.9350 1.1653 11 6 4.5273 -5.6364 0.0146 12 6 3.2488 -5.6886 2.2058 13 1 2.9242 -5.0067 2.9917 14 6 4.1894 -6.7394 2.7991 15 6 2.0471 -6.3718 1.6056 16 1 1.8296 -6.2565 0.5541 17 6 1.2254 -7.1441 2.3988 18 7 1.4899 -7.2841 3.6795 19 14 -0.2645 -7.9904 1.6550 20 1 -0.9778 -8.7545 2.7099 21 1 -1.1771 -6.9702 1.0793 22 1 0.1773 -8.9198 0.5844 23 6 2.0395 -2.8856 2.4975 24 6 1.5294 -2.1637 1.2487 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8932 -0.5139 -0.8901 29 1 3.1300 1.4424 0.0005 30 1 1.6766 1.9564 -0.8898 31 1 1.6766 1.9563 0.8901 32 1 1.6766 -0.2076 2.1391 33 1 3.9337 0.3056 1.2487 34 1 3.9329 -1.2359 0.3587 35 1 3.7170 -0.9302 3.3879 36 1 5.1700 -1.4446 2.4972 37 1 3.9324 -3.4003 3.3871 38 1 3.8207 -5.6132 -0.8151 39 1 5.4541 -5.1466 -0.2836 40 1 4.7344 -6.6715 0.2865 41 1 5.0587 -6.2452 3.2332 42 1 3.6657 -7.3005 3.5730 43 1 4.5142 -7.4214 2.0132 44 1 0.9120 -7.8277 4.2375 45 1 1.6757 -3.9131 2.4976 46 1 1.6765 -2.3720 3.3877 47 1 0.4395 -2.1637 1.2487 48 1 1.8924 -2.6774 0.3584 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337942712.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:32 Heat of formation + Delta-G solvation = -65.600290 kcal Electronic energy + Delta-G solvation = -24464.605926 eV Core-core repulsion = 21325.353080 eV Total energy + Delta-G solvation = -3139.252846 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.13437 -37.71758 -35.57892 -34.48302 -32.64173 -30.41080 -29.57724 -29.12456 -27.02129 -26.25638 -25.31520 -23.01617 -22.00991 -21.39684 -20.19186 -19.47598 -17.76943 -16.65019 -15.96007 -15.49216 -14.98515 -14.65627 -14.36402 -14.00112 -13.74250 -13.42375 -13.13989 -12.96568 -12.85867 -12.67435 -12.17215 -12.05975 -11.90369 -11.65413 -11.56379 -11.35843 -11.24913 -11.06150 -10.92540 -10.88784 -10.75332 -10.67993 -10.63634 -10.47318 -10.22656 -10.14478 -10.08182 -9.50539 -9.36459 -9.24009 -8.58519 -8.47070 -7.57029 -6.17648 -4.25871 3.22934 3.28187 3.30647 3.48926 4.05922 4.33138 4.93738 5.02449 5.10360 5.12959 5.22493 5.43317 5.44393 5.59492 5.69933 5.79006 5.81064 5.86550 5.93651 5.98316 6.04664 6.04973 6.08617 6.15458 6.21694 6.26307 6.30989 6.34503 6.37121 6.46326 6.51287 6.59298 6.63962 6.66330 6.73804 6.79957 6.81265 6.86736 7.04448 7.06983 7.28663 7.45264 7.68700 7.88368 8.12975 8.51517 8.78428 9.11933 9.42741 10.86551 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.017435 B = 0.006006 C = 0.005119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.607568 B = 4660.757049 C = 5468.789879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.092 4.092 3 C -0.146 4.146 4 C -0.077 4.077 5 C -0.134 4.134 6 C -0.094 4.094 7 C -0.102 4.102 8 C 0.518 3.482 9 O -0.570 6.570 10 N -0.593 5.593 11 C 0.098 3.902 12 C 0.249 3.751 13 H 0.062 0.938 14 C -0.153 4.153 15 C -0.525 4.525 16 H 0.060 0.940 17 C 0.068 3.932 18 N -0.888 5.888 19 Si 0.895 3.105 20 H -0.286 1.286 21 H -0.276 1.276 22 H -0.277 1.277 23 C -0.119 4.119 24 C -0.111 4.111 25 H 0.050 0.950 26 H 0.047 0.953 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.057 0.943 30 H 0.047 0.953 31 H 0.050 0.950 32 H 0.059 0.941 33 H 0.049 0.951 34 H 0.106 0.894 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.087 0.913 38 H 0.042 0.958 39 H 0.052 0.948 40 H 0.069 0.931 41 H 0.012 0.988 42 H 0.094 0.906 43 H 0.032 0.968 44 H 0.265 0.735 45 H 0.101 0.899 46 H 0.060 0.940 47 H 0.060 0.940 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.024 10.298 -2.031 10.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.110 4.110 3 C -0.203 4.203 4 C -0.096 4.096 5 C -0.170 4.170 6 C -0.132 4.132 7 C -0.123 4.123 8 C 0.307 3.693 9 O -0.452 6.452 10 N -0.322 5.322 11 C -0.045 4.045 12 C 0.148 3.852 13 H 0.080 0.920 14 C -0.212 4.212 15 C -0.563 4.563 16 H 0.078 0.922 17 C -0.135 4.135 18 N -0.526 5.526 19 Si 0.723 3.277 20 H -0.212 1.212 21 H -0.202 1.202 22 H -0.202 1.202 23 C -0.157 4.157 24 C -0.148 4.148 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.124 0.876 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.105 0.895 38 H 0.061 0.939 39 H 0.071 0.929 40 H 0.087 0.913 41 H 0.031 0.969 42 H 0.113 0.887 43 H 0.052 0.948 44 H 0.075 0.925 45 H 0.119 0.881 46 H 0.079 0.921 47 H 0.078 0.922 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.206 10.484 -2.313 10.804 hybrid contribution -0.912 -0.726 -0.228 1.188 sum 0.294 9.758 -2.542 10.088 Atomic orbital electron populations 1.21895 0.95796 1.01917 1.00940 1.21121 0.95214 0.95788 0.98917 1.21874 1.01297 0.96253 1.00901 1.21174 0.96007 0.95664 0.96724 1.22036 0.94426 0.99472 1.01115 1.21295 0.99898 0.93828 0.98160 1.21225 0.97803 0.96272 0.97045 1.20460 0.78376 0.82221 0.88240 1.90433 1.47378 1.65381 1.41990 1.48264 1.53949 1.06175 1.23857 1.21319 0.97206 0.97140 0.88834 1.19197 0.89607 0.90497 0.85895 0.92035 1.22158 0.97379 1.00105 1.01550 1.21285 1.08889 1.30176 0.95980 0.92205 1.24860 0.97760 0.96064 0.94787 1.69842 1.38365 1.39727 1.04704 0.86599 0.82638 0.79676 0.78811 1.21187 1.20161 1.20238 1.21717 0.92537 1.03634 0.97779 1.21583 0.99816 0.94770 0.98671 0.93046 0.93393 0.92221 0.91370 0.92357 0.93411 0.93128 0.92237 0.93256 0.87630 0.92434 0.92416 0.89501 0.93914 0.92892 0.91261 0.96924 0.88725 0.94849 0.92543 0.88090 0.92105 0.92177 0.91959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 8.84 37.16 0.33 -1.46 16 2 C -0.09 -1.21 2.50 -90.63 -0.23 -1.44 16 3 C -0.15 -1.67 8.84 37.16 0.33 -1.34 16 4 C -0.08 -1.12 1.78 -90.62 -0.16 -1.28 16 5 C -0.13 -2.07 4.56 -26.73 -0.12 -2.19 16 6 C -0.09 -1.47 5.19 -26.73 -0.14 -1.61 16 7 C -0.10 -1.82 2.15 -91.77 -0.20 -2.02 16 8 C 0.52 10.57 5.57 -10.99 -0.06 10.51 16 9 O -0.57 -12.34 13.02 5.56 0.07 -12.27 16 10 N -0.59 -12.52 2.75 -175.27 -0.48 -13.00 16 11 C 0.10 1.91 9.64 59.85 0.58 2.49 16 12 C 0.25 5.65 1.80 -69.09 -0.12 5.52 16 13 H 0.06 1.44 4.33 -51.93 -0.22 1.22 16 14 C -0.15 -3.41 8.92 37.16 0.33 -3.08 16 15 C -0.52 -13.06 7.82 -34.44 -0.27 -13.33 16 16 H 0.06 1.54 7.71 -52.49 -0.40 1.13 16 17 C 0.07 1.71 5.30 -17.82 -0.09 1.62 16 18 N -0.89 -22.97 11.32 55.43 0.63 -22.34 16 19 Si 0.90 20.06 29.54 -169.99 -5.02 15.04 16 20 H -0.29 -6.40 7.11 56.52 0.40 -5.99 16 21 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 22 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 23 C -0.12 -2.11 5.04 -26.73 -0.13 -2.24 16 24 C -0.11 -1.86 4.63 -26.73 -0.12 -1.98 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.76 6.43 -51.93 -0.33 0.43 16 28 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.06 0.67 6.43 -51.93 -0.33 0.34 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.05 0.69 6.43 -51.93 -0.33 0.35 16 34 H 0.11 1.94 5.11 -51.93 -0.27 1.68 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.09 1.55 7.31 -51.93 -0.38 1.17 16 38 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.05 0.97 7.65 -51.93 -0.40 0.58 16 40 H 0.07 1.29 6.33 -51.93 -0.33 0.96 16 41 H 0.01 0.24 8.14 -51.92 -0.42 -0.18 16 42 H 0.09 2.29 6.07 -51.93 -0.32 1.98 16 43 H 0.03 0.71 6.59 -51.93 -0.34 0.37 16 44 H 0.26 6.62 8.31 -40.82 -0.34 6.28 16 45 H 0.10 2.11 5.30 -51.93 -0.28 1.83 16 46 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 47 H 0.06 0.95 6.43 -51.93 -0.33 0.62 16 48 H 0.06 1.20 7.22 -51.93 -0.37 0.82 16 LS Contribution 347.75 15.07 5.24 5.24 Total: -1.00 -25.88 347.75 -8.08 -33.96 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -8.43 Total: 5.20 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: -0.09 Total: -11.83 kcal Atomic # 7 Polarization: -35.49 SS G_CDS: 0.15 Total: -35.34 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: 0.07 Total: -12.27 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -25.88 -8.08 -33.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337942712.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.637 kcal (2) G-P(sol) polarization free energy of solvation -25.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds