Wall clock time and date at job start Tue Mar 31 2020 05:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52836 * 1 3 3 H 1.11137 * 106.60699 * 2 1 4 4 C 1.52214 * 110.62907 * 244.02656 * 2 1 3 5 5 C 1.52765 * 110.73964 * 285.51611 * 4 2 1 6 6 H 1.08692 * 110.34173 * 60.47491 * 5 4 2 7 7 C 1.53354 * 109.11034 * 180.02562 * 5 4 2 8 8 C 1.50696 * 109.47080 * 294.53815 * 7 5 4 9 9 O 1.21279 * 120.00068 * 0.02562 * 8 7 5 10 10 N 1.34783 * 119.99623 * 179.97438 * 8 7 5 11 11 C 1.46500 * 119.99531 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.46957 * 180.02562 * 11 10 8 13 13 C 1.50696 * 109.47372 * 179.97438 * 12 11 10 14 14 H 1.08000 * 120.00076 * 0.02562 * 13 12 11 15 15 C 1.37873 * 120.00192 * 179.97438 * 13 12 11 16 16 N 1.31513 * 120.00183 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 120.00149 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47419 * 60.00159 * 17 15 13 19 19 H 1.48497 * 109.47591 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47061 * 300.00005 * 17 15 13 21 21 C 1.52711 * 108.87908 * 299.05076 * 5 4 2 22 22 C 1.52469 * 110.82330 * 61.63938 * 21 5 4 23 23 C 1.53110 * 110.02953 * 71.67741 * 22 21 5 24 24 C 1.54416 * 107.71415 * 188.46502 * 22 21 5 25 25 C 1.51530 * 111.71250 * 117.02238 * 2 1 3 26 26 H 1.08991 * 109.47305 * 302.97995 * 1 2 3 27 27 H 1.09000 * 109.46494 * 62.98072 * 1 2 3 28 28 H 1.09001 * 109.47004 * 182.97702 * 1 2 3 29 29 H 1.09321 * 109.58103 * 164.96617 * 4 2 1 30 30 H 1.09334 * 109.55869 * 46.00436 * 4 2 1 31 31 H 1.09001 * 109.46826 * 54.53795 * 7 5 4 32 32 H 1.08998 * 109.47290 * 174.53613 * 7 5 4 33 33 H 0.96999 * 119.99926 * 359.97438 * 10 8 7 34 34 H 1.09001 * 109.47112 * 299.99805 * 11 10 8 35 35 H 1.08998 * 109.47480 * 59.99914 * 11 10 8 36 36 H 1.09001 * 109.46972 * 299.99794 * 12 11 10 37 37 H 1.08998 * 109.47175 * 59.99631 * 12 11 10 38 38 H 0.97007 * 120.00188 * 179.97438 * 16 15 13 39 39 H 1.09311 * 109.26283 * 182.28268 * 21 5 4 40 40 H 1.09296 * 109.28258 * 300.96307 * 21 5 4 41 41 H 1.08998 * 109.47556 * 59.99639 * 23 22 21 42 42 H 1.09003 * 109.46871 * 180.02562 * 23 22 21 43 43 H 1.09004 * 109.47079 * 299.99986 * 23 22 21 44 44 H 1.09001 * 109.47124 * 60.00070 * 24 22 21 45 45 H 1.09000 * 109.46993 * 179.97438 * 24 22 21 46 46 H 1.08998 * 109.46977 * 299.99923 * 24 22 21 47 47 H 1.10212 * 108.80209 * 319.70442 * 25 2 1 48 48 H 1.10237 * 108.73917 * 204.63231 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5284 0.0000 0.0000 3 1 1.8460 1.0650 0.0000 4 6 2.0646 -0.6239 -1.2807 5 6 1.8976 -2.1421 -1.2540 6 1 0.8465 -2.4051 -1.1667 7 6 2.4491 -2.7309 -2.5581 8 6 1.6064 -2.2630 -3.7165 9 8 0.6592 -1.5314 -3.5207 10 7 1.9059 -2.6569 -4.9702 11 6 1.0870 -2.2015 -6.0963 12 6 1.6372 -2.7891 -7.3974 13 6 0.7944 -2.3213 -8.5558 14 1 -0.0490 -1.6697 -8.3815 15 6 1.1008 -2.7242 -9.8383 16 7 2.1282 -3.5173 -10.0507 17 14 0.0565 -2.1437 -11.2743 18 1 0.0935 -0.6609 -11.3458 19 1 0.5904 -2.7140 -12.5371 20 1 -1.3450 -2.5952 -11.0815 21 6 2.6892 -2.7057 -0.0760 22 6 2.1609 -2.1564 1.2445 23 6 0.7957 -2.7733 1.5605 24 6 3.1352 -2.5950 2.3593 25 6 2.0889 -0.6396 1.2541 26 1 -0.3633 0.5593 0.8620 27 1 -0.3632 0.4669 -0.9155 28 1 -0.3633 -1.0263 0.0534 29 1 3.1247 -0.3804 -1.3909 30 1 1.5239 -0.2180 -2.1399 31 1 3.4778 -2.3994 -2.6999 32 1 2.4221 -3.8193 -2.5054 33 1 2.6642 -3.2412 -5.1268 34 1 0.0582 -2.5330 -5.9549 35 1 1.1140 -1.1132 -6.1487 36 1 2.6660 -2.4580 -7.5391 37 1 1.6098 -3.8775 -7.3448 38 1 2.3435 -3.8011 -10.9529 39 1 2.6072 -3.7958 -0.0749 40 1 3.7425 -2.4358 -0.1868 41 1 0.8952 -3.8561 1.6371 42 1 0.4266 -2.3743 2.5054 43 1 0.0932 -2.5285 0.7639 44 1 4.1278 -2.1949 2.1525 45 1 2.7838 -2.2158 3.3189 46 1 3.1820 -3.6834 2.3934 47 1 1.4811 -0.3222 2.1169 48 1 3.1016 -0.2420 1.4322 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342627439.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:13 Heat of formation + Delta-G solvation = -94.251780 kcal Electronic energy + Delta-G solvation = -22698.925876 eV Core-core repulsion = 19558.430608 eV Total energy + Delta-G solvation = -3140.495268 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.18521 -38.76506 -34.97369 -34.17880 -33.32683 -32.80281 -29.85330 -27.75538 -27.44123 -26.67739 -26.19490 -24.54783 -21.73444 -20.93022 -20.53923 -19.62985 -18.08407 -16.67528 -16.22563 -15.63744 -15.30773 -14.91922 -14.61448 -14.46132 -14.40136 -14.30666 -13.81348 -13.34123 -13.23834 -12.87508 -12.58163 -12.34857 -12.30239 -12.19432 -11.86453 -11.77731 -11.53479 -11.20099 -11.16555 -11.07496 -10.99712 -10.82519 -10.75087 -10.65171 -10.31345 -10.21880 -10.13745 -9.83138 -9.69711 -9.39706 -9.06400 -8.50687 -8.31289 -6.09109 -4.12010 3.09524 3.31174 3.34940 3.37985 3.76396 4.41453 4.47701 4.49221 4.58661 4.91112 4.98724 5.07316 5.10904 5.18633 5.24317 5.27783 5.37185 5.45620 5.46717 5.57258 5.61402 5.65269 5.66203 5.72805 5.76078 5.77647 5.87405 5.92613 5.99893 6.01000 6.08456 6.14625 6.29761 6.33811 6.37190 6.39632 6.43519 6.53558 6.60939 6.76405 6.99650 7.52616 7.62717 7.89223 8.08435 8.29003 8.74004 8.94040 9.52776 11.02466 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.037681 B = 0.002791 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.897917 B =10029.719047 C =10419.630489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.082 4.082 3 H 0.055 0.945 4 C -0.114 4.114 5 C -0.066 4.066 6 H 0.081 0.919 7 C -0.141 4.141 8 C 0.503 3.497 9 O -0.547 6.547 10 N -0.726 5.726 11 C 0.122 3.878 12 C 0.013 3.987 13 C -0.522 4.522 14 H 0.058 0.942 15 C 0.059 3.941 16 N -0.895 5.895 17 Si 0.897 3.103 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.276 1.276 21 C -0.102 4.102 22 C -0.056 4.056 23 C -0.145 4.145 24 C -0.145 4.145 25 C -0.096 4.096 26 H 0.045 0.955 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.051 0.949 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.396 0.604 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.022 0.978 37 H 0.022 0.978 38 H 0.263 0.737 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.052 0.948 42 H 0.051 0.949 43 H 0.063 0.937 44 H 0.052 0.948 45 H 0.051 0.949 46 H 0.053 0.947 47 H 0.055 0.945 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.045 1.566 24.180 24.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.100 4.100 3 H 0.074 0.926 4 C -0.151 4.151 5 C -0.084 4.084 6 H 0.099 0.901 7 C -0.182 4.182 8 C 0.289 3.711 9 O -0.426 6.426 10 N -0.376 5.376 11 C 0.000 4.000 12 C -0.025 4.025 13 C -0.561 4.561 14 H 0.077 0.923 15 C -0.143 4.143 16 N -0.534 5.534 17 Si 0.725 3.275 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.201 1.201 21 C -0.140 4.140 22 C -0.056 4.056 23 C -0.202 4.202 24 C -0.203 4.203 25 C -0.134 4.134 26 H 0.064 0.936 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.104 0.896 31 H 0.106 0.894 32 H 0.107 0.893 33 H 0.230 0.770 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.040 0.960 37 H 0.040 0.960 38 H 0.072 0.928 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.082 0.918 44 H 0.071 0.929 45 H 0.070 0.930 46 H 0.072 0.928 47 H 0.074 0.926 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.469 2.017 24.164 24.374 hybrid contribution -0.009 -0.077 -0.996 0.999 sum 2.460 1.939 23.168 23.379 Atomic orbital electron populations 1.21905 0.95205 1.02035 1.01214 1.20727 0.95857 0.98984 0.94440 0.92649 1.21602 1.00581 0.94842 0.98083 1.20752 1.00418 0.95545 0.91713 0.90086 1.21872 1.00231 1.02129 0.93923 1.20631 0.85332 0.80836 0.84257 1.90628 1.30022 1.36976 1.84952 1.46387 1.33174 1.50951 1.07046 1.21677 0.93984 0.98786 0.85594 1.19311 0.96919 0.96536 0.89689 1.21025 1.13533 1.30229 0.91304 0.92337 1.24996 0.95276 0.94969 0.99040 1.69946 1.27362 1.34460 1.21596 0.86574 0.80556 0.79105 0.81314 1.20104 1.21233 1.20108 1.21547 0.99376 0.99741 0.93304 1.20333 0.95485 0.94889 0.94875 1.22053 0.96645 1.00107 1.01401 1.22290 0.98866 1.01003 0.98118 1.21261 1.00794 0.93942 0.97382 0.93564 0.92390 0.92266 0.93053 0.89610 0.89361 0.89323 0.77025 0.92730 0.92732 0.96016 0.96012 0.92792 0.92140 0.92100 0.92917 0.93033 0.91842 0.92896 0.92994 0.92789 0.92621 0.92833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 8.91 37.07 0.33 -1.26 16 2 C -0.08 -0.85 2.60 -91.85 -0.24 -1.09 16 3 H 0.06 0.57 8.29 -50.70 -0.42 0.15 16 4 C -0.11 -1.36 4.36 -27.25 -0.12 -1.48 16 5 C -0.07 -0.74 1.66 -90.71 -0.15 -0.89 16 6 H 0.08 1.05 6.12 -52.10 -0.32 0.73 16 7 C -0.14 -1.64 5.15 -27.70 -0.14 -1.79 16 8 C 0.50 8.21 7.53 -10.98 -0.08 8.13 16 9 O -0.55 -10.69 13.97 5.56 0.08 -10.61 16 10 N -0.73 -12.55 5.56 -60.29 -0.33 -12.88 16 11 C 0.12 2.61 5.61 -4.04 -0.02 2.59 16 12 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 13 C -0.52 -14.58 9.11 -34.44 -0.31 -14.90 16 14 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 15 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 16 N -0.89 -26.25 13.29 55.43 0.74 -25.51 16 17 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 C -0.10 -0.93 3.77 -27.15 -0.10 -1.03 16 22 C -0.06 -0.47 0.71 -154.57 -0.11 -0.58 16 23 C -0.15 -1.23 8.00 37.21 0.30 -0.93 16 24 C -0.15 -1.07 8.08 37.90 0.31 -0.76 16 25 C -0.10 -0.86 4.12 -28.06 -0.12 -0.97 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.71 8.08 -51.93 -0.42 0.29 16 28 H 0.06 0.65 4.92 -51.93 -0.26 0.40 16 29 H 0.05 0.58 8.17 -51.75 -0.42 0.16 16 30 H 0.09 1.29 5.84 -51.74 -0.30 0.99 16 31 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.40 5.94 8.47 -40.82 -0.35 5.60 16 34 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 36 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 39 H 0.06 0.52 8.13 -51.75 -0.42 0.09 16 40 H 0.06 0.53 8.11 -51.76 -0.42 0.11 16 41 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.05 0.40 8.08 -51.93 -0.42 -0.02 16 43 H 0.06 0.60 4.62 -51.93 -0.24 0.37 16 44 H 0.05 0.38 8.09 -51.93 -0.42 -0.04 16 45 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 47 H 0.06 0.47 7.94 -51.24 -0.41 0.07 16 48 H 0.05 0.46 7.94 -51.22 -0.41 0.05 16 LS Contribution 364.10 15.07 5.49 5.49 Total: -1.00 -30.34 364.10 -8.74 -39.08 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -8.99 Total: 1.21 kcal Atomic # 6 Polarization: -12.52 SS G_CDS: -0.70 Total: -13.22 kcal Atomic # 7 Polarization: -38.79 SS G_CDS: 0.40 Total: -38.39 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.08 Total: -10.61 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.34 -8.74 -39.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342627439.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.171 kcal (2) G-P(sol) polarization free energy of solvation -30.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds