Wall clock time and date at job start Tue Mar 31 2020 05:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47058 * 2 1 4 4 C 1.52995 * 109.47545 * 119.99613 * 2 1 3 5 5 C 1.53003 * 109.46722 * 65.00018 * 4 2 1 6 6 N 1.46500 * 109.47004 * 174.75243 * 5 4 2 7 7 C 1.46508 * 120.00106 * 273.96169 * 6 5 4 8 8 C 1.50696 * 109.47294 * 270.00212 * 7 6 5 9 9 H 1.08005 * 120.00208 * 0.02562 * 8 7 6 10 10 C 1.37875 * 119.99957 * 179.97438 * 8 7 6 11 11 N 1.31512 * 120.00116 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 120.00080 * 179.97438 * 10 8 7 13 13 H 1.48508 * 109.46980 * 89.99752 * 12 10 8 14 14 H 1.48499 * 109.47368 * 210.00134 * 12 10 8 15 15 H 1.48503 * 109.47226 * 330.00172 * 12 10 8 16 16 C 1.34774 * 119.99984 * 93.96495 * 6 5 4 17 17 O 1.21283 * 120.00180 * 4.53743 * 16 6 5 18 18 C 1.50702 * 119.99906 * 184.53602 * 16 6 5 19 19 H 1.08995 * 110.43717 * 33.43637 * 18 16 6 20 20 C 1.55237 * 110.46889 * 270.78264 * 18 16 6 21 21 C 1.54889 * 102.58816 * 203.39399 * 20 18 16 22 22 C 1.54266 * 104.31319 * 37.93558 * 21 20 18 23 23 H 1.09008 * 110.03203 * 95.65437 * 22 21 20 24 24 C 1.52997 * 110.03390 * 217.03923 * 22 21 20 25 25 C 1.53878 * 106.59751 * 336.32282 * 22 21 20 26 26 H 1.08997 * 109.47206 * 60.00373 * 1 2 3 27 27 H 1.09004 * 109.46994 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47584 * 299.99938 * 1 2 3 29 29 H 1.09000 * 109.47094 * 240.00156 * 2 1 3 30 30 H 1.09002 * 109.47302 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.47179 * 300.00158 * 3 2 1 32 32 H 1.09003 * 109.47224 * 59.99375 * 3 2 1 33 33 H 1.09001 * 109.47539 * 305.00764 * 4 2 1 34 34 H 1.08994 * 109.47327 * 184.99841 * 4 2 1 35 35 H 1.08999 * 109.47182 * 54.75539 * 5 4 2 36 36 H 1.08998 * 109.47458 * 294.75526 * 5 4 2 37 37 H 1.08999 * 109.46774 * 30.00097 * 7 6 5 38 38 H 1.08996 * 109.46507 * 150.00023 * 7 6 5 39 39 H 0.96997 * 120.00172 * 180.02562 * 11 10 8 40 40 H 1.08998 * 110.89808 * 85.10428 * 20 18 16 41 41 H 1.09002 * 110.77149 * 321.62853 * 20 18 16 42 42 H 1.09000 * 110.48920 * 279.18606 * 21 20 18 43 43 H 1.09010 * 110.48472 * 156.67729 * 21 20 18 44 44 H 1.08993 * 109.47174 * 58.54072 * 24 22 21 45 45 H 1.08998 * 109.47309 * 178.54641 * 24 22 21 46 46 H 1.09003 * 109.46952 * 298.54572 * 24 22 21 47 47 H 1.08997 * 110.03531 * 119.28491 * 25 22 21 48 48 H 1.08995 * 110.03217 * 240.71725 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2492 5 6 1.6353 -2.1954 1.1880 6 7 2.2290 -2.9122 2.3193 7 6 3.5883 -3.4487 2.2146 8 6 3.5332 -4.8555 1.6774 9 1 2.5808 -5.3050 1.4375 10 6 4.6984 -5.5685 1.4911 11 7 5.8581 -5.0207 1.7818 12 14 4.6300 -7.3127 0.8259 13 1 4.7057 -7.2803 -0.6569 14 1 5.7739 -8.0927 1.3630 15 1 3.3560 -7.9519 1.2426 16 6 1.5248 -3.0781 3.4564 17 8 0.3716 -2.7072 3.5151 18 6 2.1703 -3.7246 4.6549 19 1 3.2299 -3.4729 4.6985 20 6 1.9765 -5.2642 4.6114 21 6 2.1203 -5.6648 6.1007 22 6 1.4263 -4.5228 6.8715 23 1 0.3951 -4.7962 7.0953 24 6 2.1836 -4.2298 8.1682 25 6 1.4581 -3.2892 5.9522 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6765 1.9564 0.8899 33 1 1.6054 -0.2617 2.1370 34 1 3.1263 -0.6442 1.2951 35 1 1.9911 -2.6314 0.2545 36 1 0.5494 -2.2764 1.2361 37 1 4.1741 -2.8247 1.5396 38 1 4.0536 -3.4540 3.2002 39 1 6.6780 -5.5222 1.6505 40 1 2.7513 -5.7368 4.0078 41 1 0.9849 -5.5186 4.2370 42 1 3.1723 -5.7285 6.3787 43 1 1.6183 -6.6135 6.2908 44 1 3.2131 -3.9588 7.9343 45 1 1.7009 -3.4050 8.6924 46 1 2.1764 -5.1169 8.8016 47 1 0.4422 -2.9635 5.7291 48 1 2.0131 -2.4819 6.4298 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345269294.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:58 Heat of formation + Delta-G solvation = -82.787805 kcal Electronic energy + Delta-G solvation = -23515.300753 eV Core-core repulsion = 20375.302600 eV Total energy + Delta-G solvation = -3139.998153 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.57737 -37.42644 -36.28538 -34.68284 -32.53217 -31.13325 -29.18779 -28.31163 -27.01085 -26.90391 -25.03916 -23.23895 -22.77233 -20.64010 -19.71632 -19.41332 -17.88914 -16.73998 -16.39736 -15.55883 -15.01365 -14.78308 -14.52898 -14.25086 -13.82729 -13.52850 -13.18330 -13.11267 -12.88157 -12.75042 -12.38229 -12.29362 -12.06856 -11.89639 -11.63565 -11.35077 -11.19366 -10.95551 -10.94087 -10.76718 -10.73195 -10.56495 -10.47765 -10.37012 -10.34250 -10.22420 -10.15642 -10.02813 -9.89083 -9.64078 -8.87901 -8.51007 -7.63655 -6.17098 -4.23086 3.22310 3.29982 3.32796 3.48426 3.99602 4.34587 4.97009 5.02759 5.07430 5.12127 5.15785 5.16478 5.18455 5.53997 5.64142 5.71024 5.73392 5.75087 5.85855 5.88905 5.92032 5.94783 5.97079 6.02713 6.05385 6.07240 6.14590 6.21693 6.24233 6.29391 6.34585 6.38143 6.41650 6.42670 6.53463 6.66358 6.71315 6.75241 6.78394 6.90718 6.96286 7.24286 7.61023 7.78798 8.08914 8.42004 8.82550 9.11327 9.43782 10.89504 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.009701 B = 0.007050 C = 0.004516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2885.640343 B = 3970.414985 C = 6199.014746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 C -0.145 4.145 4 C -0.127 4.127 5 C 0.117 3.883 6 N -0.595 5.595 7 C 0.237 3.763 8 C -0.530 4.530 9 H 0.060 0.940 10 C 0.066 3.934 11 N -0.891 5.891 12 Si 0.892 3.108 13 H -0.280 1.280 14 H -0.285 1.285 15 H -0.272 1.272 16 C 0.523 3.477 17 O -0.578 6.578 18 C -0.104 4.104 19 H 0.096 0.904 20 C -0.105 4.105 21 C -0.119 4.119 22 C -0.096 4.096 23 H 0.067 0.933 24 C -0.143 4.143 25 C -0.110 4.110 26 H 0.048 0.952 27 H 0.058 0.942 28 H 0.052 0.948 29 H 0.070 0.930 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.051 0.949 33 H 0.059 0.941 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.033 0.967 38 H 0.040 0.960 39 H 0.264 0.736 40 H 0.095 0.905 41 H 0.061 0.939 42 H 0.067 0.933 43 H 0.060 0.940 44 H 0.056 0.944 45 H 0.049 0.951 46 H 0.050 0.950 47 H 0.078 0.922 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.469 5.421 3.946 8.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 C -0.202 4.202 4 C -0.165 4.165 5 C -0.006 4.006 6 N -0.324 5.324 7 C 0.117 3.883 8 C -0.569 4.569 9 H 0.079 0.921 10 C -0.137 4.137 11 N -0.530 5.530 12 Si 0.719 3.281 13 H -0.206 1.206 14 H -0.211 1.211 15 H -0.197 1.197 16 C 0.312 3.688 17 O -0.460 6.460 18 C -0.125 4.125 19 H 0.114 0.886 20 C -0.143 4.143 21 C -0.157 4.157 22 C -0.114 4.114 23 H 0.085 0.915 24 C -0.200 4.200 25 C -0.148 4.148 26 H 0.067 0.933 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.051 0.949 38 H 0.058 0.942 39 H 0.074 0.926 40 H 0.114 0.886 41 H 0.079 0.921 42 H 0.085 0.915 43 H 0.078 0.922 44 H 0.075 0.925 45 H 0.069 0.931 46 H 0.069 0.931 47 H 0.097 0.903 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.833 5.576 3.963 8.990 hybrid contribution 0.301 -1.007 -0.500 1.164 sum -5.532 4.570 3.463 7.967 Atomic orbital electron populations 1.21871 0.95434 1.02024 1.01085 1.21059 0.95758 0.95903 0.98595 1.21823 1.00947 0.96209 1.01215 1.21988 1.01165 0.95994 0.97391 1.21333 0.98815 0.90576 0.89901 1.48222 1.17993 1.53566 1.12666 1.19440 0.76695 0.93895 0.98275 1.21466 0.93048 0.98607 1.43779 0.92138 1.24909 0.95228 0.98291 0.95291 1.69918 0.97609 1.37538 1.47910 0.86591 0.77834 0.84392 0.79268 1.20598 1.21077 1.19695 1.20413 0.85831 0.77966 0.84568 1.90542 1.17806 1.53427 1.84198 1.22075 1.00908 0.97082 0.92481 0.88592 1.22479 1.02800 0.92882 0.96135 1.22457 1.00449 0.97297 0.95453 1.21732 0.99217 0.95599 0.94866 0.91496 1.21884 1.00406 1.00772 0.96955 1.22206 1.01850 0.96942 0.93810 0.93294 0.92297 0.92858 0.91144 0.92746 0.93090 0.92956 0.92252 0.91760 0.90914 0.90758 0.94891 0.94206 0.92591 0.88639 0.92058 0.91452 0.92163 0.92535 0.93140 0.93128 0.90290 0.92234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 8.95 37.16 0.33 -1.53 16 2 C -0.09 -1.26 2.92 -90.62 -0.26 -1.53 16 3 C -0.14 -1.69 9.19 37.16 0.34 -1.35 16 4 C -0.13 -2.05 5.01 -26.73 -0.13 -2.19 16 5 C 0.12 2.20 5.11 -4.04 -0.02 2.18 16 6 N -0.60 -12.63 2.46 -175.06 -0.43 -13.06 16 7 C 0.24 5.55 5.06 -5.19 -0.03 5.52 16 8 C -0.53 -13.46 8.08 -34.44 -0.28 -13.74 16 9 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 10 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 11 N -0.89 -24.14 13.29 55.43 0.74 -23.40 16 12 Si 0.89 20.32 29.54 -169.99 -5.02 15.30 16 13 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 14 H -0.29 -6.47 7.11 56.52 0.40 -6.06 16 15 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 16 C 0.52 11.10 6.83 -10.99 -0.08 11.03 16 17 O -0.58 -13.24 15.09 5.56 0.08 -13.15 16 18 C -0.10 -1.96 2.50 -89.92 -0.23 -2.19 16 19 H 0.10 1.86 6.17 -51.93 -0.32 1.54 16 20 C -0.11 -1.93 6.27 -24.55 -0.15 -2.08 16 21 C -0.12 -1.79 6.35 -25.07 -0.16 -1.95 16 22 C -0.10 -1.35 3.50 -89.50 -0.31 -1.66 16 23 H 0.07 0.91 8.14 -51.92 -0.42 0.49 16 24 C -0.14 -1.71 8.84 37.16 0.33 -1.38 16 25 C -0.11 -1.79 5.97 -25.61 -0.15 -1.94 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.79 6.68 -51.93 -0.35 0.45 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.07 1.38 8.10 -51.93 -0.42 0.96 16 36 H 0.07 1.43 5.94 -51.93 -0.31 1.12 16 37 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 38 H 0.04 0.97 5.81 -51.93 -0.30 0.66 16 39 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 40 H 0.10 1.97 6.87 -51.93 -0.36 1.61 16 41 H 0.06 1.16 8.06 -51.93 -0.42 0.74 16 42 H 0.07 1.00 7.85 -51.93 -0.41 0.59 16 43 H 0.06 0.82 8.14 -51.92 -0.42 0.40 16 44 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 45 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.08 1.40 6.79 -51.93 -0.35 1.05 16 48 H 0.06 0.89 7.67 -51.93 -0.40 0.50 16 LS Contribution 371.71 15.07 5.60 5.60 Total: -1.00 -27.40 371.71 -9.02 -36.42 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -9.09 Total: 3.50 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: -0.90 Total: -11.21 kcal Atomic # 7 Polarization: -36.77 SS G_CDS: 0.31 Total: -36.46 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: 0.08 Total: -13.15 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -27.40 -9.02 -36.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345269294.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.371 kcal (2) G-P(sol) polarization free energy of solvation -27.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds