Wall clock time and date at job start Tue Mar 31 2020 05:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 110.53654 * 2 1 4 4 C 1.54263 * 110.48743 * 237.38703 * 2 1 3 5 5 C 1.54087 * 106.62050 * 217.60339 * 4 2 1 6 6 C 1.54261 * 106.49686 * 0.17013 * 5 4 2 7 7 H 1.08995 * 110.48847 * 264.71073 * 6 5 4 8 8 C 1.50694 * 110.48558 * 142.19496 * 6 5 4 9 9 O 1.21280 * 120.00677 * 256.79793 * 8 6 5 10 10 N 1.34780 * 119.99684 * 76.80286 * 8 6 5 11 11 C 1.46500 * 119.99770 * 177.48750 * 10 8 6 12 12 C 1.50698 * 109.47208 * 310.15279 * 11 10 8 13 13 H 1.08004 * 120.00125 * 4.93863 * 12 11 10 14 14 C 1.37875 * 119.99902 * 185.20452 * 12 11 10 15 15 N 1.31510 * 120.00187 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99826 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47363 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.47197 * 120.00700 * 16 14 12 19 19 H 1.48505 * 109.47056 * 240.00106 * 16 14 12 20 20 C 1.46500 * 120.00194 * 357.48653 * 10 8 6 21 21 C 1.52997 * 109.47096 * 93.08526 * 20 10 8 22 22 C 1.53000 * 109.47207 * 53.55737 * 21 20 10 23 23 C 1.53005 * 109.46842 * 173.55544 * 21 20 10 24 24 C 1.53002 * 109.47263 * 293.55449 * 21 20 10 25 25 C 1.54891 * 110.48475 * 122.61216 * 2 1 3 26 26 H 1.09000 * 109.47609 * 297.38845 * 1 2 3 27 27 H 1.09002 * 109.47418 * 57.38597 * 1 2 3 28 28 H 1.08999 * 109.47312 * 177.38487 * 1 2 3 29 29 H 1.09003 * 110.03074 * 336.99717 * 4 2 1 30 30 H 1.08997 * 110.03157 * 98.37726 * 4 2 1 31 31 H 1.09001 * 110.15689 * 240.87665 * 5 4 2 32 32 H 1.09002 * 110.00729 * 119.38382 * 5 4 2 33 33 H 1.08999 * 109.46802 * 190.15533 * 11 10 8 34 34 H 1.08996 * 109.47255 * 70.16058 * 11 10 8 35 35 H 0.97001 * 120.00074 * 179.97438 * 15 14 12 36 36 H 1.09006 * 109.46762 * 213.08863 * 20 10 8 37 37 H 1.09001 * 109.46723 * 333.08350 * 20 10 8 38 38 H 1.09004 * 109.47134 * 53.07295 * 22 21 20 39 39 H 1.08994 * 109.47207 * 173.07210 * 22 21 20 40 40 H 1.08999 * 109.46976 * 293.07539 * 22 21 20 41 41 H 1.09002 * 109.47057 * 60.00394 * 23 21 20 42 42 H 1.09004 * 109.46946 * 180.02562 * 23 21 20 43 43 H 1.09000 * 109.47380 * 300.00048 * 23 21 20 44 44 H 1.08999 * 109.46815 * 57.00748 * 24 21 20 45 45 H 1.08999 * 109.47259 * 177.00794 * 24 21 20 46 46 H 1.09001 * 109.47061 * 297.01171 * 24 21 20 47 47 H 1.08995 * 110.75570 * 38.30898 * 25 2 1 48 48 H 1.08999 * 110.91083 * 275.00651 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9124 1.0208 0.0000 4 6 2.0699 -0.7788 -1.2172 5 6 3.3199 -1.5396 -0.7345 6 6 3.4907 -1.1980 0.7600 7 1 4.1902 -0.3715 0.8850 8 6 3.9619 -2.4066 1.5268 9 8 3.1806 -3.0337 2.2104 10 7 5.2517 -2.7908 1.4530 11 6 5.7221 -3.9325 2.2412 12 6 5.2868 -3.7670 3.6744 13 1 4.6498 -2.9406 3.9534 14 6 5.7061 -4.6675 4.6306 15 7 6.4863 -5.6705 4.2921 16 14 5.1658 -4.4627 6.4071 17 1 4.2968 -3.2644 6.5252 18 1 4.4095 -5.6665 6.8363 19 1 6.3614 -4.2950 7.2718 20 6 6.1831 -2.0666 0.5845 21 6 6.8907 -0.9766 1.3920 22 6 7.5298 -1.5971 2.6360 23 6 7.9762 -0.3275 0.5309 24 6 5.8739 0.0849 1.8165 25 6 2.0720 -0.7820 1.2222 26 1 -0.3634 0.4727 0.9124 27 1 -0.3634 0.5539 -0.8656 28 1 -0.3634 -1.0266 -0.0469 29 1 1.3175 -1.4822 -1.5740 30 1 2.3403 -0.0858 -2.0139 31 1 4.1969 -1.2146 -1.2944 32 1 3.1742 -2.6127 -0.8580 33 1 6.8100 -3.9820 2.1954 34 1 5.2993 -4.8521 1.8369 35 1 6.7816 -6.3038 4.9649 36 1 6.9225 -2.7612 0.1856 37 1 5.6326 -1.6100 -0.2380 38 1 8.1611 -2.4352 2.3405 39 1 8.1356 -0.8478 3.1454 40 1 6.7479 -1.9506 3.3082 41 1 7.5209 0.1146 -0.3553 42 1 8.4806 0.4487 1.1063 43 1 8.7006 -1.0837 0.2284 44 1 5.0724 -0.3867 2.3852 45 1 6.3674 0.8335 2.4364 46 1 5.4574 0.5640 0.9305 47 1 1.4580 -1.6600 1.4222 48 1 2.1249 -0.1408 2.1020 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345426644.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:03 Heat of formation + Delta-G solvation = -56.744017 kcal Electronic energy + Delta-G solvation = -24494.791473 eV Core-core repulsion = 21355.922664 eV Total energy + Delta-G solvation = -3138.868809 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.00668 -37.61612 -36.60794 -33.65052 -32.41093 -31.33864 -28.90329 -27.80287 -27.09466 -26.52813 -25.41417 -24.84545 -22.91850 -20.69840 -19.77678 -19.10690 -17.60826 -16.89706 -15.95001 -15.58206 -15.28294 -14.77004 -14.36990 -13.98032 -13.63177 -13.51823 -13.27166 -13.21728 -12.93762 -12.70010 -12.21088 -12.15991 -11.93562 -11.77667 -11.59128 -11.34296 -11.12107 -11.06370 -10.91576 -10.82597 -10.70357 -10.69291 -10.58232 -10.48918 -10.40672 -10.27143 -10.09719 -9.97479 -9.87200 -9.33276 -8.53055 -8.30468 -7.42340 -5.95480 -3.92936 3.36675 3.44365 3.50795 3.62006 4.07968 4.54405 4.70522 4.74395 4.86338 5.10801 5.15512 5.23493 5.36466 5.41042 5.45251 5.53586 5.59004 5.67618 5.70853 5.73169 5.79742 5.80349 5.86311 5.89725 6.00135 6.04409 6.07181 6.10924 6.14802 6.15978 6.20932 6.27592 6.42227 6.45478 6.46050 6.52001 6.62601 6.68270 6.76993 7.15215 7.32905 7.52932 7.69484 8.06735 8.23301 8.66375 9.09440 9.31999 9.69915 11.14419 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.015039 B = 0.006543 C = 0.005213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.364437 B = 4278.324891 C = 5370.300550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.098 4.098 3 H 0.071 0.929 4 C -0.117 4.117 5 C -0.111 4.111 6 C -0.145 4.145 7 H 0.114 0.886 8 C 0.514 3.486 9 O -0.524 6.524 10 N -0.601 5.601 11 C 0.249 3.751 12 C -0.494 4.494 13 H 0.064 0.936 14 C 0.056 3.944 15 N -0.902 5.902 16 Si 0.893 3.107 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.286 1.286 20 C 0.116 3.884 21 C -0.085 4.085 22 C -0.148 4.148 23 C -0.137 4.137 24 C -0.146 4.146 25 C -0.101 4.101 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.042 0.958 34 H 0.014 0.986 35 H 0.259 0.741 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.051 0.949 39 H 0.036 0.964 40 H 0.095 0.905 41 H 0.049 0.951 42 H 0.052 0.948 43 H 0.054 0.946 44 H 0.066 0.934 45 H 0.051 0.949 46 H 0.053 0.947 47 H 0.082 0.918 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.503 13.261 -11.448 17.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.116 4.116 3 H 0.089 0.911 4 C -0.154 4.154 5 C -0.149 4.149 6 C -0.166 4.166 7 H 0.131 0.869 8 C 0.300 3.700 9 O -0.399 6.399 10 N -0.333 5.333 11 C 0.130 3.870 12 C -0.533 4.533 13 H 0.082 0.918 14 C -0.144 4.144 15 N -0.543 5.543 16 Si 0.722 3.278 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.213 1.213 20 C -0.009 4.009 21 C -0.087 4.087 22 C -0.205 4.205 23 C -0.195 4.195 24 C -0.203 4.203 25 C -0.138 4.138 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.060 0.940 34 H 0.031 0.969 35 H 0.069 0.931 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.070 0.930 39 H 0.055 0.945 40 H 0.114 0.886 41 H 0.068 0.932 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.085 0.915 45 H 0.070 0.930 46 H 0.072 0.928 47 H 0.100 0.900 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.830 12.726 -10.996 17.055 hybrid contribution -0.011 -0.013 0.974 0.974 sum -2.841 12.712 -10.022 16.435 Atomic orbital electron populations 1.21787 0.95199 1.01835 1.01186 1.21969 0.95361 0.98993 0.95317 0.91102 1.22229 0.97197 0.98633 0.97377 1.22125 0.97760 1.00805 0.94213 1.22882 0.99453 0.98810 0.95409 0.86856 1.20122 0.82450 0.85394 0.82039 1.90685 1.53558 1.55346 1.40349 1.48217 1.07912 1.32853 1.44278 1.19290 0.95239 0.82304 0.90127 1.21307 1.28811 1.11266 0.91899 0.91770 1.24884 0.95297 0.95340 0.98909 1.69942 1.35535 1.14978 1.33826 0.86498 0.78192 0.78161 0.84954 1.19792 1.21132 1.21285 1.21647 0.92966 0.93921 0.92318 1.20980 0.95325 0.95418 0.96952 1.22072 1.01946 0.99226 0.97285 1.21833 0.98284 1.00293 0.99114 1.22159 0.99463 0.98222 1.00444 1.22424 0.94730 1.00209 0.96485 0.92757 0.93108 0.92531 0.91791 0.92139 0.91559 0.91618 0.94027 0.96853 0.93107 0.91228 0.91195 0.92958 0.94467 0.88609 0.93185 0.92854 0.92726 0.91539 0.93006 0.92818 0.89959 0.91812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 9.14 37.16 0.34 -1.13 16 2 C -0.10 -1.12 3.46 -88.96 -0.31 -1.43 16 3 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 4 C -0.12 -1.30 6.38 -25.50 -0.16 -1.46 16 5 C -0.11 -1.45 5.61 -25.50 -0.14 -1.60 16 6 C -0.14 -2.23 1.83 -90.12 -0.16 -2.40 16 7 H 0.11 1.59 3.10 -51.93 -0.16 1.43 16 8 C 0.51 10.71 5.15 -10.99 -0.06 10.66 16 9 O -0.52 -13.47 13.88 5.56 0.08 -13.39 16 10 N -0.60 -12.36 2.24 -175.06 -0.39 -12.75 16 11 C 0.25 6.36 4.50 -5.19 -0.02 6.33 16 12 C -0.49 -13.93 6.28 -34.44 -0.22 -14.15 16 13 H 0.06 1.90 6.58 -52.48 -0.35 1.55 16 14 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 15 N -0.90 -26.77 13.29 55.43 0.74 -26.03 16 16 Si 0.89 22.62 29.54 -169.99 -5.02 17.60 16 17 H -0.27 -6.95 7.11 56.52 0.40 -6.55 16 18 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 19 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 20 C 0.12 1.84 4.46 -4.04 -0.02 1.82 16 21 C -0.09 -1.26 0.85 -154.51 -0.13 -1.39 16 22 C -0.15 -2.65 7.10 37.16 0.26 -2.38 16 23 C -0.14 -1.61 8.47 37.16 0.31 -1.29 16 24 C -0.15 -2.05 6.72 37.16 0.25 -1.80 16 25 C -0.10 -1.50 5.48 -24.73 -0.14 -1.63 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 29 H 0.06 0.71 7.79 -51.93 -0.40 0.30 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.74 6.75 -51.93 -0.35 0.39 16 32 H 0.07 0.97 7.83 -51.93 -0.41 0.56 16 33 H 0.04 1.07 6.41 -51.93 -0.33 0.74 16 34 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 36 H 0.07 1.08 8.07 -51.93 -0.42 0.66 16 37 H 0.07 0.94 4.69 -51.93 -0.24 0.70 16 38 H 0.05 0.97 7.33 -51.93 -0.38 0.59 16 39 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.10 2.09 5.25 -51.93 -0.27 1.82 16 41 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.07 1.11 5.68 -51.93 -0.29 0.82 16 45 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.05 0.63 6.68 -51.93 -0.35 0.29 16 47 H 0.08 1.42 7.22 -51.93 -0.37 1.05 16 48 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 350.48 15.07 5.28 5.28 Total: -1.00 -31.48 350.48 -8.15 -39.62 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -8.54 Total: 0.00 kcal Atomic # 6 Polarization: -10.04 SS G_CDS: -0.29 Total: -10.33 kcal Atomic # 7 Polarization: -39.13 SS G_CDS: 0.34 Total: -38.79 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: 0.08 Total: -13.39 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.48 -8.15 -39.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345426644.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.120 kcal (2) G-P(sol) polarization free energy of solvation -31.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds