Wall clock time and date at job start Tue Mar 31 2020 05:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 110.01340 * 2 1 4 4 C 1.53877 * 110.03382 * 121.43746 * 2 1 3 5 5 C 1.54259 * 106.59605 * 119.28649 * 4 2 1 6 6 C 1.54884 * 104.20178 * 23.61240 * 5 4 2 7 7 H 1.09000 * 110.91380 * 80.43805 * 6 5 4 8 8 C 1.50696 * 110.76205 * 203.74243 * 6 5 4 9 9 O 1.21277 * 119.99944 * 104.03117 * 8 6 5 10 10 N 1.34781 * 119.99920 * 284.03256 * 8 6 5 11 11 C 1.46494 * 119.99670 * 5.19813 * 10 8 6 12 12 C 1.50700 * 109.47022 * 265.58770 * 11 10 8 13 13 H 1.08000 * 120.00388 * 0.02562 * 12 11 10 14 14 C 1.37881 * 119.99894 * 180.02562 * 12 11 10 15 15 N 1.31518 * 120.00078 * 179.97438 * 14 12 11 16 16 Si 1.86801 * 119.99980 * 359.97438 * 14 12 11 17 17 H 1.48495 * 109.47314 * 90.00319 * 16 14 12 18 18 H 1.48507 * 109.46891 * 210.00126 * 16 14 12 19 19 H 1.48497 * 109.47222 * 330.00006 * 16 14 12 20 20 C 1.46500 * 119.99869 * 185.19703 * 10 8 6 21 21 C 1.52998 * 109.47051 * 269.84484 * 20 10 8 22 22 C 1.53000 * 109.46948 * 65.09028 * 21 20 10 23 23 C 1.53001 * 109.47258 * 305.08709 * 21 20 10 24 24 C 1.53003 * 109.47002 * 185.08552 * 21 20 10 25 25 C 1.54262 * 110.03515 * 238.60957 * 2 1 3 26 26 H 1.08999 * 109.46947 * 181.39025 * 1 2 3 27 27 H 1.08992 * 109.47576 * 301.39244 * 1 2 3 28 28 H 1.09004 * 109.47302 * 61.39754 * 1 2 3 29 29 H 1.08995 * 110.03258 * 238.57439 * 4 2 1 30 30 H 1.09010 * 110.02820 * 359.95489 * 4 2 1 31 31 H 1.09007 * 110.48714 * 264.92820 * 5 4 2 32 32 H 1.09005 * 110.48456 * 142.29285 * 5 4 2 33 33 H 1.08994 * 109.47734 * 25.59066 * 11 10 8 34 34 H 1.09007 * 109.47028 * 145.59037 * 11 10 8 35 35 H 0.96994 * 119.99777 * 179.97438 * 15 14 12 36 36 H 1.09004 * 109.46776 * 149.84471 * 20 10 8 37 37 H 1.09003 * 109.46934 * 29.84697 * 20 10 8 38 38 H 1.08997 * 109.46965 * 293.95082 * 22 21 20 39 39 H 1.09005 * 109.47145 * 173.95705 * 22 21 20 40 40 H 1.09000 * 109.47581 * 53.95445 * 22 21 20 41 41 H 1.08996 * 109.46756 * 180.02562 * 23 21 20 42 42 H 1.08999 * 109.46899 * 300.00142 * 23 21 20 43 43 H 1.09000 * 109.47169 * 60.00143 * 23 21 20 44 44 H 1.09003 * 109.47351 * 300.00453 * 24 21 20 45 45 H 1.09005 * 109.46945 * 60.00349 * 24 21 20 46 46 H 1.08997 * 109.46977 * 179.97438 * 24 21 20 47 47 H 1.08999 * 110.49020 * 98.42583 * 25 2 1 48 48 H 1.08998 * 110.48475 * 335.77762 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9030 1.0242 0.0000 4 6 2.0571 -0.7540 1.2335 5 6 2.8875 -1.9408 0.7028 6 6 3.3137 -1.5004 -0.7197 7 1 4.1718 -0.8295 -0.6785 8 6 3.6164 -2.6988 -1.5817 9 8 2.8206 -3.0563 -2.4242 10 7 4.7714 -3.3735 -1.4164 11 6 5.6803 -3.0133 -0.3254 12 6 6.7200 -2.0490 -0.8354 13 1 6.7050 -1.7354 -1.8688 14 6 7.6904 -1.5669 0.0173 15 7 8.5981 -0.7258 -0.4279 16 14 7.7159 -2.1087 1.8048 17 1 8.5535 -3.3273 1.9409 18 1 8.2832 -1.0221 2.6433 19 1 6.3315 -2.4071 2.2514 20 6 5.1179 -4.4669 -2.3277 21 6 4.5708 -5.7844 -1.7747 22 6 3.0415 -5.7374 -1.7650 23 6 5.0839 -5.9911 -0.3482 24 6 5.0398 -6.9422 -2.6582 25 6 2.0585 -0.7549 -1.2371 26 1 -0.3633 -1.0274 0.0249 27 1 -0.3634 0.5353 0.8771 28 1 -0.3634 0.4920 -0.9023 29 1 2.6866 -0.0960 1.8324 30 1 1.2228 -1.1193 1.8325 31 1 2.2772 -2.8428 0.6561 32 1 3.7638 -2.1041 1.3302 33 1 5.1141 -2.5448 0.4796 34 1 6.1708 -3.9113 0.0504 35 1 9.2806 -0.3864 0.1720 36 1 6.2020 -4.5337 -2.4194 37 1 4.6815 -4.2750 -3.3079 38 1 2.7058 -4.9832 -1.0534 39 1 2.6499 -6.7119 -1.4732 40 1 2.6794 -5.4837 -2.7613 41 1 4.6944 -6.9299 0.0454 42 1 6.1733 -6.0245 -0.3553 43 1 4.7497 -5.1663 0.2812 44 1 4.6743 -6.7949 -3.6746 45 1 6.1293 -6.9757 -2.6652 46 1 4.6503 -7.8808 -2.2641 47 1 2.3298 -0.0527 -2.0255 48 1 1.3144 -1.4653 -1.5972 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345426645.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:06 Heat of formation + Delta-G solvation = -68.342365 kcal Electronic energy + Delta-G solvation = -24390.053001 eV Core-core repulsion = 21250.681249 eV Total energy + Delta-G solvation = -3139.371751 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.92309 -37.84923 -36.32303 -34.41908 -32.34365 -31.12164 -28.57898 -28.28187 -26.97358 -26.82062 -26.15776 -24.49496 -22.61872 -20.94520 -19.43446 -18.78809 -17.85609 -17.02585 -16.51726 -15.55368 -15.42534 -14.95805 -14.18835 -14.14882 -13.72589 -13.54576 -13.44240 -13.03231 -12.89882 -12.65175 -12.40580 -12.24783 -12.03933 -11.85470 -11.76317 -11.49438 -11.31136 -11.11218 -10.96716 -10.80826 -10.69484 -10.62997 -10.56630 -10.48140 -10.30314 -10.23608 -10.17158 -10.13539 -10.02989 -9.56496 -8.90348 -8.68606 -7.62717 -6.20756 -4.21002 3.16458 3.23532 3.25851 3.40306 3.91670 4.26421 4.85100 4.86188 4.99629 5.10149 5.16637 5.18296 5.30076 5.45868 5.53987 5.61024 5.68579 5.84983 5.85445 5.85904 5.88984 5.93040 5.94000 6.05788 6.08274 6.13135 6.14898 6.18911 6.21568 6.27193 6.29880 6.31581 6.38285 6.45855 6.51750 6.53284 6.55037 6.61670 6.73973 6.78528 6.81704 6.82498 7.42613 7.50161 8.18856 8.47283 8.84941 9.02652 9.39457 10.92178 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.010479 B = 0.008762 C = 0.005597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2671.367625 B = 3194.689417 C = 5001.824862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.099 4.099 3 H 0.070 0.930 4 C -0.118 4.118 5 C -0.113 4.113 6 C -0.112 4.112 7 H 0.112 0.888 8 C 0.526 3.474 9 O -0.566 6.566 10 N -0.585 5.585 11 C 0.197 3.803 12 C -0.538 4.538 13 H 0.077 0.923 14 C 0.076 3.924 15 N -0.892 5.892 16 Si 0.868 3.132 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.263 1.263 20 C 0.131 3.869 21 C -0.085 4.085 22 C -0.125 4.125 23 C -0.141 4.141 24 C -0.136 4.136 25 C -0.100 4.100 26 H 0.054 0.946 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.042 0.958 34 H 0.033 0.967 35 H 0.266 0.734 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.052 0.948 39 H 0.037 0.963 40 H 0.059 0.941 41 H 0.045 0.955 42 H 0.055 0.945 43 H 0.061 0.939 44 H 0.053 0.947 45 H 0.054 0.946 46 H 0.051 0.949 47 H 0.063 0.937 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.985 -5.105 2.475 12.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.117 4.117 3 H 0.089 0.911 4 C -0.155 4.155 5 C -0.151 4.151 6 C -0.133 4.133 7 H 0.130 0.870 8 C 0.314 3.686 9 O -0.447 6.447 10 N -0.313 5.313 11 C 0.076 3.924 12 C -0.576 4.576 13 H 0.095 0.905 14 C -0.127 4.127 15 N -0.530 5.530 16 Si 0.694 3.306 17 H -0.200 1.200 18 H -0.209 1.209 19 H -0.188 1.188 20 C 0.007 3.993 21 C -0.087 4.087 22 C -0.182 4.182 23 C -0.198 4.198 24 C -0.194 4.194 25 C -0.138 4.138 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.060 0.940 34 H 0.051 0.949 35 H 0.076 0.924 36 H 0.096 0.904 37 H 0.089 0.911 38 H 0.071 0.929 39 H 0.056 0.944 40 H 0.078 0.922 41 H 0.064 0.936 42 H 0.074 0.926 43 H 0.080 0.920 44 H 0.072 0.928 45 H 0.073 0.927 46 H 0.070 0.930 47 H 0.082 0.918 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.206 -5.179 2.106 12.523 hybrid contribution 0.497 -0.124 1.030 1.150 sum -10.710 -5.303 3.136 12.355 Atomic orbital electron populations 1.21859 0.95358 1.01565 1.01073 1.21756 0.95316 0.99483 0.95152 0.91143 1.22202 0.99081 0.97003 0.97238 1.22386 0.99695 0.97980 0.94999 1.22260 1.00095 0.96202 0.94792 0.86982 1.20302 0.80931 0.83607 0.83726 1.90572 1.47834 1.69141 1.37162 1.47808 1.19781 1.32461 1.31295 1.20102 0.89729 0.96443 0.86148 1.21419 1.10976 1.26149 0.99093 0.90499 1.24868 0.95039 0.94538 0.98279 1.69893 1.15905 1.31299 1.35912 0.86979 0.79082 0.78901 0.85604 1.19957 1.20917 1.18777 1.21373 1.00087 0.84803 0.93023 1.20976 0.96338 0.95485 0.95868 1.21788 0.94098 0.99801 1.02547 1.21977 1.00862 1.00956 0.96025 1.21790 1.00990 0.97280 0.99338 1.22297 0.96502 0.98492 0.96491 0.92718 0.93136 0.92917 0.91725 0.91948 0.91870 0.90559 0.94003 0.94923 0.92443 0.90417 0.91066 0.92874 0.94368 0.92210 0.93632 0.92593 0.92022 0.92791 0.92652 0.92984 0.91846 0.90369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 8.84 37.16 0.33 -1.26 16 2 C -0.10 -1.30 3.50 -89.50 -0.31 -1.62 16 3 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 4 C -0.12 -1.57 6.46 -25.62 -0.17 -1.74 16 5 C -0.11 -1.78 5.72 -25.08 -0.14 -1.92 16 6 C -0.11 -2.01 2.30 -89.78 -0.21 -2.22 16 7 H 0.11 2.24 7.60 -51.93 -0.39 1.84 16 8 C 0.53 10.48 5.80 -10.99 -0.06 10.41 16 9 O -0.57 -11.98 13.01 5.56 0.07 -11.91 16 10 N -0.58 -11.70 1.96 -175.06 -0.34 -12.04 16 11 C 0.20 4.25 2.81 -5.20 -0.01 4.24 16 12 C -0.54 -14.00 9.69 -34.44 -0.33 -14.34 16 13 H 0.08 2.26 8.06 -52.49 -0.42 1.83 16 14 C 0.08 2.04 5.47 -17.82 -0.10 1.94 16 15 N -0.89 -25.83 13.96 55.43 0.77 -25.06 16 16 Si 0.87 19.67 27.47 -169.99 -4.67 15.00 16 17 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 18 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 19 H -0.26 -5.55 6.54 56.52 0.37 -5.18 16 20 C 0.13 2.39 4.62 -4.04 -0.02 2.37 16 21 C -0.09 -1.32 0.85 -154.51 -0.13 -1.45 16 22 C -0.13 -1.98 7.03 37.16 0.26 -1.72 16 23 C -0.14 -2.16 7.08 37.16 0.26 -1.90 16 24 C -0.14 -1.77 8.47 37.16 0.31 -1.46 16 25 C -0.10 -1.58 5.53 -25.07 -0.14 -1.71 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.06 0.74 7.67 -51.92 -0.40 0.34 16 31 H 0.06 0.98 8.04 -51.93 -0.42 0.56 16 32 H 0.08 1.26 6.12 -51.93 -0.32 0.94 16 33 H 0.04 0.89 3.40 -51.93 -0.18 0.71 16 34 H 0.03 0.70 5.26 -51.92 -0.27 0.42 16 35 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 36 H 0.08 1.46 8.07 -51.93 -0.42 1.04 16 37 H 0.07 1.34 7.50 -51.93 -0.39 0.95 16 38 H 0.05 0.93 6.50 -51.93 -0.34 0.59 16 39 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 1.01 7.60 -51.93 -0.39 0.61 16 41 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.06 0.86 7.85 -51.93 -0.41 0.46 16 43 H 0.06 1.02 6.05 -51.93 -0.31 0.71 16 44 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 45 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 46 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 48 H 0.08 1.29 7.02 -51.93 -0.36 0.93 16 LS Contribution 355.93 15.07 5.36 5.36 Total: -1.00 -28.20 355.93 -8.11 -36.30 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -8.85 Total: 4.71 kcal Atomic # 6 Polarization: -11.91 SS G_CDS: -0.46 Total: -12.37 kcal Atomic # 7 Polarization: -37.53 SS G_CDS: 0.43 Total: -37.10 kcal Atomic # 8 Polarization: -11.98 SS G_CDS: 0.07 Total: -11.91 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -4.67 Total: 15.00 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -28.20 -8.11 -36.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345426645.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.040 kcal (2) G-P(sol) polarization free energy of solvation -28.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds