Wall clock time and date at job start Tue Mar 31 2020 05:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 110.43034 * 2 1 4 4 C 1.54884 * 110.48576 * 237.31272 * 2 1 3 5 5 C 1.54968 * 102.77366 * 203.40335 * 4 2 1 6 6 C 1.54258 * 104.16188 * 37.88928 * 5 4 2 7 7 H 1.09010 * 110.03135 * 95.75117 * 6 5 4 8 8 C 1.52996 * 110.03561 * 217.13187 * 6 5 4 9 9 C 1.50695 * 109.47381 * 292.91266 * 8 6 5 10 10 O 1.21279 * 119.99818 * 359.97438 * 9 8 6 11 11 N 1.34776 * 120.00245 * 180.02562 * 9 8 6 12 12 C 1.46503 * 120.00317 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.47126 * 179.97438 * 12 11 9 14 14 C 1.53002 * 109.47343 * 59.99461 * 13 12 11 15 15 C 1.52997 * 109.46975 * 299.99453 * 13 12 11 16 16 C 1.52997 * 109.46947 * 179.97438 * 13 12 11 17 17 C 1.50706 * 109.47238 * 179.97438 * 16 13 12 18 18 H 1.07999 * 119.99515 * 0.02562 * 17 16 13 19 19 C 1.37870 * 120.00176 * 180.02562 * 17 16 13 20 20 N 1.31520 * 119.99883 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00043 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47216 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47389 * 119.99848 * 21 19 17 24 24 H 1.48501 * 109.47057 * 239.99829 * 21 19 17 25 25 C 1.53872 * 106.63944 * 336.44763 * 6 5 4 26 26 H 1.08998 * 109.47431 * 297.45986 * 1 2 3 27 27 H 1.08999 * 109.47417 * 57.46656 * 1 2 3 28 28 H 1.09004 * 109.47300 * 177.45915 * 1 2 3 29 29 H 1.08997 * 110.76266 * 321.69285 * 4 2 1 30 30 H 1.09000 * 110.75750 * 84.88389 * 4 2 1 31 31 H 1.08996 * 110.47825 * 279.23177 * 5 4 2 32 32 H 1.09002 * 110.52586 * 156.57154 * 5 4 2 33 33 H 1.09001 * 109.47364 * 172.90441 * 8 6 5 34 34 H 1.09004 * 109.46785 * 52.90943 * 8 6 5 35 35 H 0.96998 * 119.99803 * 359.97438 * 11 9 8 36 36 H 1.08992 * 109.47051 * 59.99157 * 12 11 9 37 37 H 1.08996 * 109.46467 * 299.99417 * 12 11 9 38 38 H 1.09002 * 109.47067 * 179.97438 * 14 13 12 39 39 H 1.09000 * 109.47312 * 299.99943 * 14 13 12 40 40 H 1.09004 * 109.46930 * 59.99999 * 14 13 12 41 41 H 1.08998 * 109.47624 * 299.99919 * 15 13 12 42 42 H 1.09000 * 109.47140 * 60.00388 * 15 13 12 43 43 H 1.09002 * 109.47045 * 180.02562 * 15 13 12 44 44 H 1.09001 * 109.46832 * 59.99979 * 16 13 12 45 45 H 1.09000 * 109.47611 * 300.00276 * 16 13 12 46 46 H 0.97004 * 119.99507 * 180.02562 * 20 19 17 47 47 H 1.08998 * 110.03766 * 119.26044 * 25 6 5 48 48 H 1.09003 * 110.03203 * 240.64146 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9105 1.0214 0.0000 4 6 2.0720 -0.7836 -1.2211 5 6 3.4912 -1.2000 -0.7585 6 6 3.3166 -1.5394 0.7361 7 1 3.1696 -2.6124 0.8606 8 6 4.5465 -1.0845 1.5242 9 6 5.7384 -1.9117 1.1169 10 8 5.6161 -2.7801 0.2791 11 7 6.9401 -1.6873 1.6843 12 6 8.0990 -2.4912 1.2880 13 6 9.3289 -2.0362 2.0762 14 6 9.0707 -2.2170 3.5734 15 6 9.6067 -0.5609 1.7810 16 6 10.5390 -2.8762 1.6627 17 6 11.7506 -2.4277 2.4386 18 1 11.6658 -1.6242 3.1552 19 6 12.9672 -3.0430 2.2335 20 7 13.0705 -4.0211 1.3604 21 14 14.4688 -2.4876 3.1958 22 1 14.0901 -1.3780 4.1072 23 1 14.9952 -3.6251 3.9921 24 1 15.5151 -2.0175 2.2526 25 6 2.0699 -0.7773 1.2183 26 1 -0.3634 0.4739 0.9118 27 1 -0.3634 0.5527 -0.8664 28 1 -0.3634 -1.0267 -0.0456 29 1 1.4581 -1.6619 -1.4201 30 1 2.1221 -0.1418 -2.1007 31 1 4.1907 -0.3733 -0.8828 32 1 3.8319 -2.0755 -1.3113 33 1 4.3625 -1.2127 2.5908 34 1 4.7446 -0.0335 1.3135 35 1 7.0379 -0.9931 2.3546 36 1 8.2831 -2.3621 0.2215 37 1 7.9009 -3.5422 1.4978 38 1 9.9471 -1.8933 4.1349 39 1 8.2085 -1.6188 3.8683 40 1 8.8728 -3.2681 3.7836 41 1 9.7906 -0.4321 0.7144 42 1 8.7445 0.0372 2.0759 43 1 10.4832 -0.2369 2.3422 44 1 10.7230 -2.7477 0.5960 45 1 10.3409 -3.9272 1.8731 46 1 13.9264 -4.4543 1.2164 47 1 1.3176 -1.4802 1.5760 48 1 2.3409 -0.0837 2.0143 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345893193.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:29 Heat of formation + Delta-G solvation = -88.715417 kcal Electronic energy + Delta-G solvation = -22429.642812 eV Core-core repulsion = 19289.387618 eV Total energy + Delta-G solvation = -3140.255193 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.92748 -38.41844 -36.98096 -33.55462 -32.73912 -32.03912 -29.80817 -27.77771 -27.01484 -26.51659 -25.84576 -24.22153 -22.74224 -20.65756 -20.13694 -19.49702 -18.29126 -16.86684 -16.32556 -15.85112 -15.58584 -15.00340 -14.85439 -14.50293 -13.91844 -13.73150 -13.46054 -13.31928 -13.14204 -12.96964 -12.73337 -12.61053 -12.11151 -12.07246 -11.81115 -11.21097 -11.14047 -11.02947 -10.97828 -10.87672 -10.84080 -10.83018 -10.66532 -10.64377 -10.49296 -10.40320 -10.24209 -9.87974 -9.64215 -9.14016 -8.91174 -8.66836 -8.36743 -6.00516 -4.01784 2.89994 3.29553 3.37580 3.39764 3.51036 4.38035 4.44087 4.44925 4.54543 4.91715 5.00061 5.05860 5.27084 5.32398 5.35022 5.37235 5.44378 5.46262 5.50939 5.55977 5.63344 5.67955 5.70493 5.75336 5.78014 5.92337 5.93474 5.98431 6.17047 6.22292 6.23210 6.24763 6.31308 6.39752 6.40129 6.59233 6.62475 6.79472 7.06333 7.07048 7.13212 7.63907 7.76094 7.81116 7.98431 8.39909 8.51301 9.03285 9.61401 11.10966 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.049310 B = 0.002681 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.696936 B =10441.843404 C =10631.514748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.098 4.098 3 H 0.072 0.928 4 C -0.122 4.122 5 C -0.113 4.113 6 C -0.075 4.075 7 H 0.079 0.921 8 C -0.136 4.136 9 C 0.504 3.496 10 O -0.544 6.544 11 N -0.725 5.725 12 C 0.128 3.872 13 C -0.072 4.072 14 C -0.127 4.127 15 C -0.127 4.127 16 C 0.035 3.965 17 C -0.510 4.510 18 H 0.060 0.940 19 C 0.055 3.945 20 N -0.894 5.894 21 Si 0.889 3.111 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.285 1.285 25 C -0.117 4.117 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.397 0.603 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.066 0.934 39 H 0.028 0.972 40 H 0.047 0.953 41 H 0.047 0.953 42 H 0.028 0.972 43 H 0.066 0.934 44 H 0.018 0.982 45 H 0.018 0.982 46 H 0.259 0.741 47 H 0.064 0.936 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.933 9.232 0.350 23.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.117 4.117 3 H 0.090 0.910 4 C -0.160 4.160 5 C -0.150 4.150 6 C -0.094 4.094 7 H 0.097 0.903 8 C -0.176 4.176 9 C 0.290 3.710 10 O -0.421 6.421 11 N -0.376 5.376 12 C 0.005 3.995 13 C -0.073 4.073 14 C -0.184 4.184 15 C -0.184 4.184 16 C -0.002 4.002 17 C -0.548 4.548 18 H 0.078 0.922 19 C -0.146 4.146 20 N -0.534 5.534 21 Si 0.717 3.283 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.211 1.211 25 C -0.155 4.155 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.107 0.893 34 H 0.108 0.892 35 H 0.232 0.768 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.047 0.953 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.047 0.953 43 H 0.085 0.915 44 H 0.036 0.964 45 H 0.036 0.964 46 H 0.069 0.931 47 H 0.083 0.917 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -21.880 8.474 -0.324 23.466 hybrid contribution 1.104 0.543 0.854 1.498 sum -20.776 9.017 0.530 22.654 Atomic orbital electron populations 1.21811 0.95275 1.01715 1.01369 1.21971 0.95198 0.99242 0.95275 0.90973 1.22614 0.96724 0.99525 0.97121 1.22381 0.96021 1.01480 0.95158 1.21501 0.92361 1.00565 0.94984 0.90291 1.21861 0.93607 1.00403 1.01694 1.20667 0.84334 0.84322 0.81632 1.90678 1.85018 1.33692 1.32751 1.46259 1.09193 1.38887 1.43299 1.21589 0.84148 0.94562 0.99153 1.20893 0.95016 0.96788 0.94576 1.21761 1.00061 1.00489 0.96102 1.21757 1.00183 0.95064 1.01393 1.19100 0.90025 0.94311 0.96802 1.21219 0.93243 1.18006 1.22352 0.92215 1.25026 0.98969 0.95171 0.95435 1.69982 1.24977 1.23869 1.34552 0.86587 0.83250 0.78516 0.79931 1.19813 1.21135 1.21140 1.22317 0.96883 0.98762 0.97542 0.92871 0.92872 0.92667 0.91602 0.91918 0.92112 0.90692 0.89274 0.89186 0.76801 0.91987 0.91982 0.91458 0.95252 0.93407 0.93411 0.95255 0.91460 0.96363 0.96362 0.93100 0.91682 0.91769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 9.12 37.16 0.34 -0.63 16 2 C -0.10 -0.76 3.46 -88.97 -0.31 -1.07 16 3 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 4 C -0.12 -1.08 6.33 -24.70 -0.16 -1.24 16 5 C -0.11 -1.23 5.40 -25.03 -0.14 -1.37 16 6 C -0.08 -0.77 2.55 -89.51 -0.23 -1.00 16 7 H 0.08 0.94 7.95 -51.92 -0.41 0.52 16 8 C -0.14 -1.36 4.83 -27.89 -0.13 -1.50 16 9 C 0.50 7.25 7.61 -10.99 -0.08 7.16 16 10 O -0.54 -9.89 14.78 5.56 0.08 -9.81 16 11 N -0.72 -10.35 4.96 -60.30 -0.30 -10.65 16 12 C 0.13 2.28 4.56 -4.04 -0.02 2.26 16 13 C -0.07 -1.37 0.54 -154.51 -0.08 -1.45 16 14 C -0.13 -2.22 8.05 37.16 0.30 -1.92 16 15 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 16 C 0.04 0.86 4.04 -27.88 -0.11 0.75 16 17 C -0.51 -13.53 7.65 -34.44 -0.26 -13.79 16 18 H 0.06 1.53 5.68 -52.49 -0.30 1.23 16 19 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 20 N -0.89 -26.47 13.29 55.43 0.74 -25.73 16 21 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 22 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 25 C -0.12 -0.95 6.03 -25.62 -0.15 -1.10 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.37 8.12 -51.93 -0.42 -0.05 16 29 H 0.07 0.58 8.04 -51.93 -0.42 0.16 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.67 7.77 -51.93 -0.40 0.27 16 32 H 0.07 0.98 7.63 -51.93 -0.40 0.58 16 33 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.09 0.77 8.02 -51.93 -0.42 0.35 16 35 H 0.40 4.76 6.16 -40.82 -0.25 4.50 16 36 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 37 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 38 H 0.07 1.27 6.62 -51.93 -0.34 0.92 16 39 H 0.03 0.41 6.86 -51.93 -0.36 0.06 16 40 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.03 0.41 6.86 -51.93 -0.36 0.06 16 43 H 0.07 1.27 6.62 -51.93 -0.34 0.92 16 44 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 47 H 0.06 0.50 7.84 -51.93 -0.41 0.10 16 48 H 0.06 0.46 7.67 -51.93 -0.40 0.06 16 LS Contribution 367.26 15.07 5.53 5.53 Total: -1.00 -30.27 367.26 -8.81 -39.08 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -9.01 Total: 0.77 kcal Atomic # 6 Polarization: -14.52 SS G_CDS: -0.84 Total: -15.36 kcal Atomic # 7 Polarization: -36.82 SS G_CDS: 0.44 Total: -36.38 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.08 Total: -9.81 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.27 -8.81 -39.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345893193.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.635 kcal (2) G-P(sol) polarization free energy of solvation -30.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds