Wall clock time and date at job start Tue Mar 31 2020 05:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 110.01700 * 2 1 4 4 C 1.53869 * 110.07634 * 121.41682 * 2 1 3 5 5 C 1.54266 * 106.59800 * 119.30516 * 4 2 1 6 6 C 1.55238 * 104.23333 * 23.61579 * 5 4 2 7 7 H 1.08993 * 110.76342 * 80.31404 * 6 5 4 8 8 C 1.53004 * 110.89775 * 203.79562 * 6 5 4 9 9 C 1.50696 * 109.46718 * 288.21236 * 8 6 5 10 10 O 1.21286 * 120.00324 * 0.02562 * 9 8 6 11 11 N 1.34777 * 120.00126 * 180.02562 * 9 8 6 12 12 C 1.46496 * 120.00548 * 179.97438 * 11 9 8 13 13 C 1.52998 * 109.47376 * 179.97438 * 12 11 9 14 14 C 1.52998 * 109.47121 * 299.99876 * 13 12 11 15 15 C 1.52995 * 109.47032 * 59.99982 * 13 12 11 16 16 C 1.53000 * 109.47149 * 180.02562 * 13 12 11 17 17 C 1.50697 * 109.47278 * 180.02562 * 16 13 12 18 18 H 1.07998 * 120.00058 * 0.02562 * 17 16 13 19 19 C 1.37876 * 120.00397 * 179.97438 * 17 16 13 20 20 N 1.31513 * 119.99601 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00293 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47133 * 90.00172 * 21 19 17 23 23 H 1.48500 * 109.46960 * 210.00425 * 21 19 17 24 24 H 1.48503 * 109.46981 * 330.00013 * 21 19 17 25 25 C 1.54266 * 110.03121 * 238.61124 * 2 1 3 26 26 H 1.08995 * 109.47464 * 181.39052 * 1 2 3 27 27 H 1.09007 * 109.46772 * 301.39061 * 1 2 3 28 28 H 1.09005 * 109.47226 * 61.38587 * 1 2 3 29 29 H 1.08999 * 110.04012 * 238.59163 * 4 2 1 30 30 H 1.09003 * 110.03070 * 0.02690 * 4 2 1 31 31 H 1.09005 * 110.48526 * 142.29451 * 5 4 2 32 32 H 1.09006 * 110.48581 * 264.93644 * 5 4 2 33 33 H 1.08993 * 109.47246 * 48.20811 * 8 6 5 34 34 H 1.08998 * 109.46968 * 168.21388 * 8 6 5 35 35 H 0.97008 * 119.99671 * 359.97438 * 11 9 8 36 36 H 1.08999 * 109.47228 * 300.00177 * 12 11 9 37 37 H 1.09008 * 109.46973 * 59.99933 * 12 11 9 38 38 H 1.09003 * 109.46985 * 60.00123 * 14 13 12 39 39 H 1.09006 * 109.47277 * 179.97438 * 14 13 12 40 40 H 1.08998 * 109.47410 * 300.00053 * 14 13 12 41 41 H 1.09002 * 109.47251 * 59.99996 * 15 13 12 42 42 H 1.09000 * 109.47222 * 179.97438 * 15 13 12 43 43 H 1.08995 * 109.47486 * 299.99764 * 15 13 12 44 44 H 1.09002 * 109.46865 * 299.99840 * 16 13 12 45 45 H 1.08998 * 109.47183 * 60.00069 * 16 13 12 46 46 H 0.97004 * 119.99771 * 179.97438 * 20 19 17 47 47 H 1.09002 * 110.48629 * 335.73471 * 25 2 1 48 48 H 1.08998 * 110.48744 * 98.24375 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0582 -0.7533 1.2333 5 6 2.8891 -1.9398 0.7026 6 6 3.3159 -1.4992 -0.7235 7 1 4.1722 -0.8264 -0.6799 8 6 3.6230 -2.7143 -1.6011 9 6 4.9163 -3.3441 -1.1520 10 8 5.5316 -2.8683 -0.2214 11 7 5.3894 -4.4362 -1.7845 12 6 6.6469 -5.0482 -1.3484 13 6 6.9540 -6.2634 -2.2259 14 6 5.8201 -7.2829 -2.1001 15 6 7.0816 -5.8199 -3.6846 16 6 8.2670 -6.9029 -1.7699 17 6 8.5699 -8.0994 -2.6346 18 1 7.8937 -8.3758 -3.4300 19 6 9.7107 -8.8406 -2.4109 20 7 10.5343 -8.5037 -1.4425 21 14 10.0864 -10.3234 -3.4831 22 1 10.8932 -9.8957 -4.6542 23 1 10.8500 -11.3236 -2.6947 24 1 8.8147 -10.9296 -3.9528 25 6 2.0584 -0.7549 -1.2372 26 1 -0.3634 -1.0273 0.0249 27 1 -0.3633 0.5353 0.8773 28 1 -0.3634 0.4922 -0.9022 29 1 2.6876 -0.0949 1.8319 30 1 1.2245 -1.1198 1.8323 31 1 3.7657 -2.1024 1.3297 32 1 2.2793 -2.8421 0.6563 33 1 2.8151 -3.4405 -1.5119 34 1 3.7144 -2.3982 -2.6402 35 1 4.8971 -4.8170 -2.5287 36 1 7.4546 -4.3218 -1.4375 37 1 6.5558 -5.3646 -0.3092 38 1 4.8845 -6.8275 -2.4246 39 1 6.0387 -8.1484 -2.7256 40 1 5.7292 -7.5988 -1.0609 41 1 7.8894 -5.0935 -3.7742 42 1 7.3009 -6.6855 -4.3097 43 1 6.1460 -5.3646 -4.0091 44 1 9.0750 -6.1767 -1.8592 45 1 8.1757 -7.2189 -0.7308 46 1 11.3368 -9.0255 -1.2849 47 1 1.3145 -1.4658 -1.5968 48 1 2.3266 -0.0528 -2.0267 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345893196.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:33 Heat of formation + Delta-G solvation = -89.145428 kcal Electronic energy + Delta-G solvation = -22402.092107 eV Core-core repulsion = 19261.818267 eV Total energy + Delta-G solvation = -3140.273840 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.87610 -38.43280 -36.99268 -33.55341 -32.74543 -32.03359 -29.76294 -27.82194 -27.02226 -26.51539 -25.87310 -24.24584 -22.75763 -20.56134 -20.02614 -19.63711 -18.22694 -16.78635 -16.32700 -16.14481 -15.43314 -15.25320 -14.57666 -14.33597 -14.13181 -13.87475 -13.42758 -13.25507 -13.11476 -12.96527 -12.72815 -12.47694 -12.21883 -12.06471 -11.88669 -11.18936 -11.14406 -11.03873 -11.01802 -10.87908 -10.85411 -10.71775 -10.67012 -10.63810 -10.51392 -10.39975 -10.25411 -9.87604 -9.65174 -9.13901 -8.92134 -8.66916 -8.36267 -6.00207 -4.01541 2.89787 3.30481 3.37442 3.38981 3.50264 4.39586 4.41151 4.44915 4.55193 4.94491 5.00058 5.08967 5.24414 5.30429 5.35222 5.37298 5.41301 5.46114 5.51414 5.55515 5.62897 5.64003 5.73898 5.75410 5.77683 5.88559 5.93623 6.00343 6.17139 6.18987 6.23217 6.28794 6.31882 6.37142 6.39991 6.59347 6.62596 6.79539 7.06402 7.07177 7.13285 7.63868 7.76304 7.81053 7.98574 8.40093 8.51225 9.03278 9.61538 11.11245 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.048981 B = 0.002669 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.509265 B =10489.280636 C =10688.428775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.098 4.098 3 H 0.069 0.931 4 C -0.121 4.121 5 C -0.117 4.117 6 C -0.075 4.075 7 H 0.084 0.916 8 C -0.134 4.134 9 C 0.505 3.495 10 O -0.544 6.544 11 N -0.724 5.724 12 C 0.128 3.872 13 C -0.072 4.072 14 C -0.127 4.127 15 C -0.127 4.127 16 C 0.035 3.965 17 C -0.511 4.511 18 H 0.059 0.941 19 C 0.055 3.945 20 N -0.894 5.894 21 Si 0.889 3.111 22 H -0.282 1.282 23 H -0.288 1.288 24 H -0.275 1.275 25 C -0.117 4.117 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.059 0.941 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.397 0.603 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.028 0.972 39 H 0.066 0.934 40 H 0.047 0.953 41 H 0.047 0.953 42 H 0.066 0.934 43 H 0.029 0.971 44 H 0.018 0.982 45 H 0.018 0.982 46 H 0.260 0.740 47 H 0.067 0.933 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.139 14.060 -0.540 23.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.116 4.116 3 H 0.087 0.913 4 C -0.159 4.159 5 C -0.155 4.155 6 C -0.094 4.094 7 H 0.102 0.898 8 C -0.174 4.174 9 C 0.291 3.709 10 O -0.422 6.422 11 N -0.376 5.376 12 C 0.005 3.995 13 C -0.073 4.073 14 C -0.184 4.184 15 C -0.184 4.184 16 C -0.002 4.002 17 C -0.549 4.549 18 H 0.077 0.923 19 C -0.146 4.146 20 N -0.534 5.534 21 Si 0.717 3.283 22 H -0.208 1.208 23 H -0.213 1.213 24 H -0.200 1.200 25 C -0.154 4.154 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.078 0.922 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.232 0.768 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.047 0.953 39 H 0.085 0.915 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.085 0.915 43 H 0.048 0.952 44 H 0.036 0.964 45 H 0.036 0.964 46 H 0.070 0.930 47 H 0.085 0.915 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -18.524 14.340 0.226 23.426 hybrid contribution 0.152 -1.101 -0.923 1.444 sum -18.371 13.239 -0.696 22.655 Atomic orbital electron populations 1.21884 0.95225 1.01686 1.01333 1.21727 0.95422 0.99378 0.95091 0.91290 1.22227 0.99261 0.97318 0.97084 1.22461 0.99602 0.97203 0.96202 1.21917 0.97721 0.95377 0.94404 0.89768 1.21705 0.95925 0.98520 1.01293 1.20654 0.86931 0.80452 0.82849 1.90679 1.60032 1.62651 1.28836 1.46256 1.25728 1.29639 1.35994 1.21592 0.84297 0.94961 0.98613 1.20894 0.99123 0.92811 0.94448 1.21758 0.95500 0.99448 1.01683 1.21757 0.98918 1.01238 0.96495 1.19093 0.89230 0.95233 0.96644 1.21180 1.06524 1.11329 1.15868 0.92276 1.25022 0.96457 0.97697 0.95390 1.69968 1.12750 1.39917 1.30743 0.86643 0.78346 0.82830 0.80453 1.20778 1.21342 1.19957 1.22525 0.97002 0.98804 0.97114 0.92635 0.92917 0.92904 0.92023 0.91979 0.90615 0.92177 0.89164 0.89166 0.76788 0.91976 0.91980 0.95262 0.91465 0.93408 0.93406 0.91469 0.95241 0.96376 0.96357 0.93044 0.91454 0.91818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 8.84 37.16 0.33 -0.65 16 2 C -0.10 -0.78 3.50 -89.51 -0.31 -1.09 16 3 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 4 C -0.12 -1.09 6.46 -25.62 -0.17 -1.25 16 5 C -0.12 -1.26 5.78 -24.88 -0.14 -1.40 16 6 C -0.08 -0.77 2.46 -88.43 -0.22 -0.99 16 7 H 0.08 1.01 7.88 -51.93 -0.41 0.60 16 8 C -0.13 -1.34 5.21 -27.88 -0.15 -1.49 16 9 C 0.51 7.24 7.67 -10.99 -0.08 7.16 16 10 O -0.54 -9.92 14.86 5.55 0.08 -9.84 16 11 N -0.72 -10.32 4.96 -60.30 -0.30 -10.62 16 12 C 0.13 2.28 4.56 -4.05 -0.02 2.26 16 13 C -0.07 -1.37 0.54 -154.51 -0.08 -1.45 16 14 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 15 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 16 C 0.04 0.87 4.04 -27.88 -0.11 0.76 16 17 C -0.51 -13.55 7.65 -34.44 -0.26 -13.81 16 18 H 0.06 1.51 5.68 -52.49 -0.30 1.21 16 19 C 0.06 1.54 5.46 -17.82 -0.10 1.45 16 20 N -0.89 -26.46 13.29 55.43 0.74 -25.73 16 21 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 25 C -0.12 -0.94 5.80 -25.07 -0.15 -1.08 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.51 7.67 -51.93 -0.40 0.12 16 31 H 0.08 0.99 7.40 -51.93 -0.38 0.61 16 32 H 0.06 0.62 7.95 -51.93 -0.41 0.20 16 33 H 0.09 0.76 8.00 -51.93 -0.42 0.35 16 34 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.40 4.73 6.16 -40.82 -0.25 4.48 16 36 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 37 H 0.06 1.19 8.14 -51.92 -0.42 0.76 16 38 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 39 H 0.07 1.27 6.62 -51.93 -0.34 0.92 16 40 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.07 1.26 6.62 -51.93 -0.34 0.91 16 43 H 0.03 0.41 6.86 -51.93 -0.36 0.06 16 44 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 46 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 47 H 0.07 0.50 7.76 -51.93 -0.40 0.09 16 48 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 367.64 15.07 5.54 5.54 Total: -1.00 -30.28 367.64 -8.83 -39.10 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -9.00 Total: 0.78 kcal Atomic # 6 Polarization: -14.55 SS G_CDS: -0.86 Total: -15.41 kcal Atomic # 7 Polarization: -36.78 SS G_CDS: 0.44 Total: -36.34 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.08 Total: -9.84 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.28 -8.83 -39.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345893196.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.041 kcal (2) G-P(sol) polarization free energy of solvation -30.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds