Wall clock time and date at job start Tue Mar 31 2020 05:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 110.53759 * 2 1 4 4 C 1.54890 * 110.48823 * 122.61161 * 2 1 3 5 5 C 1.54889 * 102.74947 * 156.61916 * 4 2 1 6 6 C 1.54257 * 104.19758 * 322.06079 * 5 4 2 7 7 H 1.09005 * 110.03633 * 264.27559 * 6 5 4 8 8 C 1.53002 * 110.03510 * 142.89476 * 6 5 4 9 9 C 1.50696 * 109.47303 * 66.45232 * 8 6 5 10 10 O 1.21284 * 120.00109 * 0.02562 * 9 8 6 11 11 N 1.34777 * 120.00137 * 180.02562 * 9 8 6 12 12 C 1.46506 * 119.99873 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.46684 * 179.97438 * 12 11 9 14 14 C 1.52997 * 109.47317 * 59.99944 * 13 12 11 15 15 C 1.52997 * 109.47269 * 299.99599 * 13 12 11 16 16 C 1.53006 * 109.46623 * 179.97438 * 13 12 11 17 17 C 1.50699 * 109.46866 * 179.97438 * 16 13 12 18 18 H 1.08003 * 119.99962 * 359.97438 * 17 16 13 19 19 C 1.37874 * 120.00270 * 180.02562 * 17 16 13 20 20 N 1.31522 * 119.99834 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00496 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47325 * 59.99531 * 21 19 17 23 23 H 1.48496 * 109.47425 * 179.97438 * 21 19 17 24 24 H 1.48505 * 109.47183 * 299.99726 * 21 19 17 25 25 C 1.53875 * 106.59960 * 23.60891 * 6 5 4 26 26 H 1.09001 * 109.47182 * 298.83840 * 1 2 3 27 27 H 1.08997 * 109.47463 * 58.83869 * 1 2 3 28 28 H 1.09005 * 109.47106 * 178.84502 * 1 2 3 29 29 H 1.09001 * 110.75570 * 38.30856 * 4 2 1 30 30 H 1.08999 * 110.75635 * 274.93744 * 4 2 1 31 31 H 1.09001 * 110.48831 * 203.37463 * 5 4 2 32 32 H 1.09006 * 110.59599 * 80.79656 * 5 4 2 33 33 H 1.09000 * 109.46986 * 306.45381 * 8 6 5 34 34 H 1.08996 * 109.47407 * 186.45609 * 8 6 5 35 35 H 0.96999 * 120.00047 * 359.97438 * 11 9 8 36 36 H 1.09000 * 109.47212 * 59.99645 * 12 11 9 37 37 H 1.09001 * 109.46577 * 299.99570 * 12 11 9 38 38 H 1.09001 * 109.46832 * 179.97438 * 14 13 12 39 39 H 1.09002 * 109.47153 * 299.99641 * 14 13 12 40 40 H 1.08996 * 109.46952 * 59.99813 * 14 13 12 41 41 H 1.09000 * 109.47140 * 300.00547 * 15 13 12 42 42 H 1.09001 * 109.47230 * 59.99691 * 15 13 12 43 43 H 1.09001 * 109.47375 * 180.02562 * 15 13 12 44 44 H 1.08993 * 109.46955 * 300.00075 * 16 13 12 45 45 H 1.09000 * 109.47050 * 59.99904 * 16 13 12 46 46 H 0.96992 * 120.00032 * 180.02562 * 20 19 17 47 47 H 1.08996 * 110.03513 * 119.28887 * 25 6 5 48 48 H 1.09008 * 110.03233 * 240.71656 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9123 1.0207 0.0000 4 6 2.0721 -0.7820 1.2222 5 6 3.4907 -1.1979 0.7600 6 6 3.3165 -1.5405 -0.7340 7 1 3.1701 -2.6137 -0.8565 8 6 4.5465 -1.0865 -1.5227 9 6 5.7420 -1.9019 -1.1021 10 8 5.6221 -2.7619 -0.2553 11 7 6.9446 -1.6756 -1.6670 12 6 8.1067 -2.4687 -1.2585 13 6 9.3366 -2.0146 -2.0472 14 6 9.6049 -0.5347 -1.7662 15 6 9.0847 -2.2122 -3.5433 16 6 10.5504 -2.8425 -1.6201 17 6 11.7618 -2.3957 -2.3973 18 1 11.6745 -1.6010 -3.1235 19 6 12.9812 -3.0020 -2.1821 20 7 13.0873 -3.9701 -1.2981 21 14 14.4828 -2.4477 -3.1448 22 1 14.7433 -1.0115 -2.8722 23 1 15.6609 -3.2513 -2.7305 24 1 14.2383 -2.6395 -4.5970 25 6 2.0699 -0.7788 -1.2172 26 1 -0.3633 0.4957 0.9002 27 1 -0.3634 0.5317 -0.8793 28 1 -0.3633 -1.0275 -0.0207 29 1 1.4581 -1.6601 1.4223 30 1 2.1251 -0.1382 2.1001 31 1 3.8316 -2.0721 1.3146 32 1 4.1915 -0.3722 0.8829 33 1 4.7374 -0.0321 -1.3228 34 1 4.3672 -1.2276 -2.5885 35 1 7.0405 -0.9881 -2.3445 36 1 7.9157 -3.5229 -1.4591 37 1 8.2858 -2.3282 -0.1926 38 1 10.4814 -0.2114 -2.3277 39 1 8.7402 0.0553 -2.0701 40 1 9.7843 -0.3940 -0.7004 41 1 8.8936 -3.2665 -3.7434 42 1 8.2200 -1.6222 -3.8472 43 1 9.9612 -1.8891 -4.1051 44 1 10.7296 -2.7013 -0.5543 45 1 10.3595 -3.8969 -1.8199 46 1 13.9452 -4.3964 -1.1464 47 1 2.3411 -0.0858 -2.0136 48 1 1.3175 -1.4823 -1.5741 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345893197.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:36 Heat of formation + Delta-G solvation = -88.600322 kcal Electronic energy + Delta-G solvation = -22432.490131 eV Core-core repulsion = 19292.239928 eV Total energy + Delta-G solvation = -3140.250202 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.92921 -38.41873 -36.97941 -33.55315 -32.73650 -32.03730 -29.81072 -27.77648 -27.01315 -26.51640 -25.84448 -24.21905 -22.73803 -20.65510 -20.13460 -19.49713 -18.28882 -16.86457 -16.32071 -15.85216 -15.58541 -15.00082 -14.85374 -14.50919 -13.91945 -13.73825 -13.45473 -13.31454 -13.14231 -12.97421 -12.72985 -12.60263 -12.11226 -12.05834 -11.81262 -11.21022 -11.13689 -11.00642 -10.97797 -10.88263 -10.86631 -10.83253 -10.65510 -10.62859 -10.49530 -10.39820 -10.26739 -9.87402 -9.64031 -9.13543 -8.92959 -8.66778 -8.35880 -5.99958 -4.01429 2.90015 3.31647 3.37147 3.37992 3.51030 4.38092 4.44377 4.45170 4.54539 4.91897 5.00170 5.06158 5.26975 5.32603 5.35267 5.37287 5.44462 5.46376 5.50994 5.56030 5.63406 5.68008 5.70714 5.75385 5.78033 5.92493 5.93540 5.98576 6.17051 6.22347 6.23235 6.25375 6.31392 6.39836 6.40257 6.59307 6.62450 6.79522 7.06314 7.07138 7.13225 7.63696 7.76345 7.81145 7.98647 8.40121 8.51346 9.03149 9.61564 11.11456 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.049252 B = 0.002683 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.367950 B =10434.555720 C =10624.783597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.098 4.098 3 H 0.072 0.928 4 C -0.122 4.122 5 C -0.113 4.113 6 C -0.075 4.075 7 H 0.078 0.922 8 C -0.136 4.136 9 C 0.504 3.496 10 O -0.544 6.544 11 N -0.725 5.725 12 C 0.128 3.872 13 C -0.072 4.072 14 C -0.127 4.127 15 C -0.127 4.127 16 C 0.036 3.964 17 C -0.511 4.511 18 H 0.059 0.941 19 C 0.056 3.944 20 N -0.895 5.895 21 Si 0.890 3.110 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.278 1.278 25 C -0.117 4.117 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.060 0.940 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.397 0.603 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.066 0.934 39 H 0.028 0.972 40 H 0.047 0.953 41 H 0.047 0.953 42 H 0.028 0.972 43 H 0.066 0.934 44 H 0.018 0.982 45 H 0.018 0.982 46 H 0.261 0.739 47 H 0.064 0.936 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.953 9.073 -0.492 23.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.117 4.117 3 H 0.090 0.910 4 C -0.160 4.160 5 C -0.150 4.150 6 C -0.094 4.094 7 H 0.097 0.903 8 C -0.176 4.176 9 C 0.290 3.710 10 O -0.421 6.421 11 N -0.376 5.376 12 C 0.005 3.995 13 C -0.073 4.073 14 C -0.184 4.184 15 C -0.184 4.184 16 C -0.002 4.002 17 C -0.550 4.550 18 H 0.077 0.923 19 C -0.145 4.145 20 N -0.534 5.534 21 Si 0.718 3.282 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.203 1.203 25 C -0.155 4.155 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.079 0.921 33 H 0.108 0.892 34 H 0.107 0.893 35 H 0.232 0.768 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.047 0.953 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.047 0.953 43 H 0.085 0.915 44 H 0.036 0.964 45 H 0.036 0.964 46 H 0.070 0.930 47 H 0.082 0.918 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -21.891 8.316 0.196 23.418 hybrid contribution 1.098 0.559 -0.874 1.511 sum -20.794 8.875 -0.678 22.618 Atomic orbital electron populations 1.21808 0.95265 1.01708 1.01373 1.21974 0.95195 0.99250 0.95276 0.90974 1.22604 0.96717 0.99544 0.97130 1.22369 0.96008 1.01507 0.95164 1.21502 0.92358 1.00545 0.94996 0.90309 1.21861 0.93567 1.00492 1.01645 1.20669 0.84371 0.84138 0.81782 1.90679 1.85165 1.33950 1.32341 1.46260 1.08998 1.39624 1.42755 1.21592 0.84065 0.94742 0.99053 1.20896 0.95040 0.96740 0.94605 1.21757 1.00170 0.95056 1.01407 1.21757 1.00050 1.00500 0.96094 1.19088 0.89949 0.94394 0.96725 1.21143 0.93142 1.18793 1.21897 0.92333 1.25021 0.98951 0.95158 0.95416 1.69957 1.25042 1.24405 1.33986 0.86701 0.82555 0.78612 0.80363 1.20341 1.21403 1.20335 1.22321 0.96888 0.98745 0.97548 0.92852 0.92892 0.92663 0.91582 0.91917 0.90695 0.92118 0.89188 0.89278 0.76802 0.91989 0.91976 0.91469 0.95258 0.93412 0.93409 0.95252 0.91464 0.96370 0.96378 0.92980 0.91772 0.91677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 9.12 37.15 0.34 -0.63 16 2 C -0.10 -0.77 3.46 -88.96 -0.31 -1.07 16 3 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 4 C -0.12 -1.08 6.33 -24.74 -0.16 -1.24 16 5 C -0.11 -1.23 5.36 -25.08 -0.13 -1.37 16 6 C -0.08 -0.77 2.56 -89.51 -0.23 -1.00 16 7 H 0.08 0.93 7.97 -51.93 -0.41 0.52 16 8 C -0.14 -1.36 4.83 -27.88 -0.13 -1.50 16 9 C 0.50 7.25 7.60 -10.99 -0.08 7.16 16 10 O -0.54 -9.89 14.75 5.55 0.08 -9.81 16 11 N -0.72 -10.35 4.96 -60.29 -0.30 -10.65 16 12 C 0.13 2.28 4.56 -4.04 -0.02 2.26 16 13 C -0.07 -1.37 0.54 -154.51 -0.08 -1.45 16 14 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 15 C -0.13 -2.21 8.05 37.16 0.30 -1.92 16 16 C 0.04 0.88 4.04 -27.88 -0.11 0.77 16 17 C -0.51 -13.58 7.65 -34.44 -0.26 -13.84 16 18 H 0.06 1.49 5.68 -52.48 -0.30 1.19 16 19 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 20 N -0.89 -26.48 13.29 55.43 0.74 -25.74 16 21 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 C -0.12 -0.95 6.03 -25.61 -0.15 -1.10 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.05 0.37 8.11 -51.93 -0.42 -0.05 16 29 H 0.07 0.58 8.06 -51.93 -0.42 0.16 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.98 7.60 -51.93 -0.39 0.59 16 32 H 0.06 0.68 7.78 -51.93 -0.40 0.27 16 33 H 0.09 0.77 8.04 -51.93 -0.42 0.35 16 34 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.40 4.76 6.16 -40.82 -0.25 4.51 16 36 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 37 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 39 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 40 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.03 0.41 6.86 -51.93 -0.36 0.06 16 43 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 44 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 47 H 0.06 0.46 7.67 -51.93 -0.40 0.06 16 48 H 0.06 0.50 7.81 -51.92 -0.41 0.10 16 LS Contribution 367.19 15.07 5.53 5.53 Total: -1.00 -30.22 367.19 -8.81 -39.03 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -9.01 Total: 0.84 kcal Atomic # 6 Polarization: -14.54 SS G_CDS: -0.84 Total: -15.38 kcal Atomic # 7 Polarization: -36.83 SS G_CDS: 0.44 Total: -36.39 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.08 Total: -9.81 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.22 -8.81 -39.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345893197.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.571 kcal (2) G-P(sol) polarization free energy of solvation -30.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds