Wall clock time and date at job start Tue Mar 31 2020 05:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08992 * 110.01656 * 2 1 4 4 C 1.54268 * 110.07082 * 238.57495 * 2 1 3 5 5 C 1.54891 * 104.19667 * 217.08102 * 4 2 1 6 6 C 1.54971 * 102.77350 * 37.92574 * 5 4 2 7 7 C 1.53882 * 110.02827 * 121.39292 * 2 1 3 8 8 H 1.09003 * 110.02352 * 238.66502 * 7 2 1 9 9 C 1.52997 * 110.03407 * 0.04367 * 7 2 1 10 10 C 1.50698 * 109.47342 * 184.31479 * 9 7 2 11 11 O 1.21286 * 119.99758 * 0.02562 * 10 9 7 12 12 N 1.34770 * 120.00019 * 180.02562 * 10 9 7 13 13 C 1.46507 * 119.99912 * 180.02562 * 12 10 9 14 14 C 1.52992 * 109.47485 * 179.97438 * 13 12 10 15 15 C 1.53006 * 109.47223 * 59.99555 * 14 13 12 16 16 C 1.52999 * 109.46961 * 300.00204 * 14 13 12 17 17 C 1.52997 * 109.47482 * 179.97438 * 14 13 12 18 18 C 1.50701 * 109.47212 * 179.97438 * 17 14 13 19 19 H 1.07998 * 120.00129 * 0.02562 * 18 17 14 20 20 C 1.37880 * 119.99861 * 179.97438 * 18 17 14 21 21 N 1.31510 * 119.99913 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99734 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47432 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.46890 * 120.00210 * 22 20 18 25 25 H 1.48501 * 109.47062 * 240.00257 * 22 20 18 26 26 H 1.08999 * 109.46896 * 298.61313 * 1 2 3 27 27 H 1.09005 * 109.46772 * 58.61051 * 1 2 3 28 28 H 1.08996 * 109.47297 * 178.61182 * 1 2 3 29 29 H 1.08994 * 110.48813 * 335.77030 * 4 2 1 30 30 H 1.09002 * 110.48170 * 98.27693 * 4 2 1 31 31 H 1.09000 * 110.75237 * 156.25924 * 5 4 2 32 32 H 1.08991 * 110.76063 * 279.45052 * 5 4 2 33 33 H 1.08998 * 110.52809 * 203.43444 * 6 5 4 34 34 H 1.09001 * 110.48048 * 80.75850 * 6 5 4 35 35 H 1.09002 * 109.47045 * 64.31284 * 9 7 2 36 36 H 1.09001 * 109.46922 * 304.31491 * 9 7 2 37 37 H 0.96992 * 120.00518 * 359.97438 * 12 10 9 38 38 H 1.09002 * 109.47280 * 59.99618 * 13 12 10 39 39 H 1.09001 * 109.46702 * 299.99811 * 13 12 10 40 40 H 1.08993 * 109.46955 * 180.02562 * 15 14 13 41 41 H 1.09000 * 109.47050 * 300.00346 * 15 14 13 42 42 H 1.09001 * 109.47002 * 60.00080 * 15 14 13 43 43 H 1.09002 * 109.46716 * 299.99630 * 16 14 13 44 44 H 1.09000 * 109.47486 * 59.99547 * 16 14 13 45 45 H 1.09001 * 109.47362 * 180.02562 * 16 14 13 46 46 H 1.09002 * 109.47153 * 59.99783 * 17 14 13 47 47 H 1.09001 * 109.46832 * 299.99974 * 17 14 13 48 48 H 0.97002 * 119.99768 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0241 0.0000 4 6 2.0595 -0.7555 -1.2365 5 6 3.3150 -1.4997 -0.7181 6 6 2.8891 -1.9397 0.7056 7 6 2.0571 -0.7531 1.2341 8 1 2.6853 -0.0940 1.8334 9 6 0.8861 -1.2670 2.0741 10 6 1.4134 -1.9090 3.3314 11 8 2.6082 -1.9509 3.5357 12 7 0.5573 -2.4365 4.2287 13 6 1.0699 -3.0602 5.4513 14 6 -0.1009 -3.5742 6.2913 15 6 -0.8924 -4.6063 5.4854 16 6 -1.0159 -2.4047 6.6603 17 6 0.4344 -4.2260 7.5677 18 6 -0.7190 -4.7317 8.3954 19 1 -1.7325 -4.6016 8.0457 20 6 -0.4803 -5.3614 9.5985 21 7 0.7539 -5.5203 10.0240 22 14 -1.9100 -5.9889 10.6240 23 1 -3.1873 -5.6889 9.9286 24 1 -1.7802 -7.4567 10.8084 25 1 -1.8989 -5.3205 11.9500 26 1 -0.3633 0.4921 0.9022 27 1 -0.3633 0.5353 -0.8773 28 1 -0.3634 -1.0273 -0.0249 29 1 1.3159 -1.4665 -1.5964 30 1 2.3284 -0.0537 -2.0259 31 1 3.5346 -2.3669 -1.3409 32 1 4.1726 -0.8284 -0.6769 33 1 3.7651 -2.1011 1.3338 34 1 2.2798 -2.8423 0.6595 35 1 0.3220 -2.0019 1.4999 36 1 0.2346 -0.4337 2.3374 37 1 -0.3982 -2.4027 4.0656 38 1 1.6334 -2.3248 6.0256 39 1 1.7221 -3.8930 5.1884 40 1 -1.7268 -4.9721 6.0837 41 1 -1.2738 -4.1422 4.5759 42 1 -0.2406 -5.4394 5.2225 43 1 -0.4521 -1.6695 7.2344 44 1 -1.3973 -1.9407 5.7507 45 1 -1.8499 -2.7708 7.2591 46 1 0.9985 -3.4910 8.1420 47 1 1.0860 -5.0592 7.3044 48 1 0.9218 -5.9630 10.8706 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345896336.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:43 Heat of formation + Delta-G solvation = -82.880848 kcal Electronic energy + Delta-G solvation = -22726.309960 eV Core-core repulsion = 19586.307773 eV Total energy + Delta-G solvation = -3140.002187 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.06967 -38.50121 -36.94729 -33.55670 -32.26074 -31.81877 -30.94405 -27.31433 -26.77608 -26.51453 -25.38983 -24.87000 -22.77510 -20.95509 -20.27538 -18.83069 -18.15989 -17.08656 -16.33468 -15.94213 -15.38758 -15.19663 -14.77618 -14.48070 -14.07116 -13.86327 -13.62454 -13.25471 -13.10628 -12.78148 -12.55980 -12.50936 -12.24545 -12.06877 -11.88278 -11.15835 -11.08249 -11.02599 -10.94270 -10.86459 -10.84198 -10.79693 -10.65970 -10.63932 -10.40449 -10.39345 -10.24006 -9.87742 -9.62760 -9.13605 -8.91030 -8.65948 -8.36720 -6.00485 -4.01734 2.91153 3.29557 3.37593 3.39779 3.52276 4.39191 4.42699 4.44845 4.53297 4.99573 5.04566 5.13083 5.17975 5.24657 5.33385 5.35129 5.44603 5.46032 5.55368 5.62103 5.64170 5.65116 5.74685 5.76786 5.78290 5.86430 5.99349 6.03398 6.17266 6.21762 6.23526 6.26382 6.32150 6.38236 6.40192 6.59667 6.62695 6.80039 7.06571 7.07202 7.13478 7.64056 7.76291 7.82188 7.98525 8.40094 8.52555 9.03393 9.61467 11.11048 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.040624 B = 0.002931 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.090665 B = 9550.574553 C = 9862.659021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.094 4.094 3 H 0.071 0.929 4 C -0.120 4.120 5 C -0.128 4.128 6 C -0.112 4.112 7 C -0.071 4.071 8 H 0.078 0.922 9 C -0.137 4.137 10 C 0.503 3.497 11 O -0.545 6.545 12 N -0.725 5.725 13 C 0.128 3.872 14 C -0.073 4.073 15 C -0.126 4.126 16 C -0.126 4.126 17 C 0.036 3.964 18 C -0.510 4.510 19 H 0.060 0.940 20 C 0.055 3.945 21 N -0.894 5.894 22 Si 0.888 3.112 23 H -0.273 1.273 24 H -0.285 1.285 25 H -0.285 1.285 26 H 0.058 0.942 27 H 0.050 0.950 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.060 0.940 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.397 0.603 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.066 0.934 41 H 0.028 0.972 42 H 0.047 0.953 43 H 0.047 0.953 44 H 0.028 0.972 45 H 0.066 0.934 46 H 0.018 0.982 47 H 0.018 0.982 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.387 10.027 -20.945 23.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.113 4.113 3 H 0.089 0.911 4 C -0.157 4.157 5 C -0.165 4.165 6 C -0.150 4.150 7 C -0.090 4.090 8 H 0.097 0.903 9 C -0.177 4.177 10 C 0.289 3.711 11 O -0.422 6.422 12 N -0.376 5.376 13 C 0.005 3.995 14 C -0.073 4.073 15 C -0.184 4.184 16 C -0.184 4.184 17 C -0.002 4.002 18 C -0.549 4.549 19 H 0.078 0.922 20 C -0.146 4.146 21 N -0.534 5.534 22 Si 0.717 3.283 23 H -0.198 1.198 24 H -0.211 1.211 25 H -0.211 1.211 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.079 0.921 35 H 0.110 0.890 36 H 0.111 0.889 37 H 0.232 0.768 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.047 0.953 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.047 0.953 45 H 0.085 0.915 46 H 0.036 0.964 47 H 0.036 0.964 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.429 9.918 -20.634 22.898 hybrid contribution -1.209 -0.415 0.708 1.461 sum -1.638 9.503 -19.926 22.137 Atomic orbital electron populations 1.22023 0.95232 1.01914 1.01514 1.21810 0.95638 0.99280 0.94574 0.91091 1.22444 0.97514 0.98843 0.96916 1.22528 0.97525 0.99718 0.96762 1.22389 1.00235 0.97098 0.95259 1.21536 0.95279 0.97245 0.94919 0.90316 1.21986 0.99786 1.01415 0.94516 1.20751 0.86889 0.78561 0.84909 1.90677 1.15706 1.58185 1.77669 1.46251 1.10008 1.59462 1.21907 1.21587 0.97001 0.96887 0.83985 1.20898 0.93728 0.95425 0.97259 1.21756 1.00713 0.98282 0.97620 1.21755 1.00206 0.97228 0.99189 1.19094 0.96350 0.95339 0.89406 1.21224 0.92988 1.36794 1.03854 0.92213 1.25020 0.95375 0.96299 0.97857 1.69977 1.18800 1.43408 1.21204 0.86595 0.82815 0.78563 0.80360 1.19804 1.21133 1.21128 0.92302 0.93046 0.92251 0.91650 0.92062 0.91874 0.91686 0.90716 0.92121 0.89025 0.88918 0.76823 0.92002 0.91991 0.91476 0.95263 0.93415 0.93418 0.95252 0.91468 0.96379 0.96376 0.93094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 7.89 37.16 0.29 -0.74 16 2 C -0.09 -0.77 3.50 -89.50 -0.31 -1.08 16 3 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 4 C -0.12 -0.93 6.36 -25.07 -0.16 -1.08 16 5 C -0.13 -1.12 6.91 -24.69 -0.17 -1.29 16 6 C -0.11 -1.23 5.40 -25.03 -0.14 -1.36 16 7 C -0.07 -0.73 2.55 -89.50 -0.23 -0.96 16 8 H 0.08 0.94 7.95 -51.93 -0.41 0.53 16 9 C -0.14 -1.38 3.88 -27.89 -0.11 -1.49 16 10 C 0.50 7.23 7.61 -10.99 -0.08 7.15 16 11 O -0.54 -9.93 14.78 5.55 0.08 -9.85 16 12 N -0.72 -10.35 4.96 -60.29 -0.30 -10.65 16 13 C 0.13 2.28 4.56 -4.04 -0.02 2.26 16 14 C -0.07 -1.38 0.54 -154.51 -0.08 -1.46 16 15 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 16 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 17 C 0.04 0.88 4.04 -27.88 -0.11 0.76 16 18 C -0.51 -13.55 7.65 -34.44 -0.26 -13.81 16 19 H 0.06 1.53 5.68 -52.49 -0.30 1.23 16 20 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 21 N -0.89 -26.48 13.29 55.43 0.74 -25.74 16 22 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 23 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 26 H 0.06 0.39 6.63 -51.93 -0.34 0.05 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.40 6.84 -51.93 -0.35 0.05 16 29 H 0.06 0.49 7.84 -51.93 -0.41 0.08 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.98 7.63 -51.93 -0.40 0.58 16 34 H 0.06 0.68 7.77 -51.93 -0.40 0.27 16 35 H 0.09 0.79 6.88 -51.93 -0.36 0.44 16 36 H 0.09 0.78 6.47 -51.93 -0.34 0.45 16 37 H 0.40 4.75 6.16 -40.82 -0.25 4.50 16 38 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 40 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 41 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 42 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 43 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.03 0.41 6.86 -51.93 -0.36 0.06 16 45 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 46 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 361.00 15.07 5.44 5.44 Total: -1.00 -30.31 361.00 -8.69 -39.00 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -8.75 Total: 1.11 kcal Atomic # 6 Polarization: -14.59 SS G_CDS: -0.88 Total: -15.48 kcal Atomic # 7 Polarization: -36.83 SS G_CDS: 0.44 Total: -36.39 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.08 Total: -9.85 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.31 -8.69 -39.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345896336.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.883 kcal (2) G-P(sol) polarization free energy of solvation -30.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds