Wall clock time and date at job start Tue Mar 31 2020 05:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 110.05417 * 2 1 4 4 C 1.53873 * 110.02950 * 238.58969 * 2 1 3 5 5 C 1.54267 * 106.59860 * 240.71575 * 4 2 1 6 6 C 1.54893 * 104.19273 * 336.38847 * 5 4 2 7 7 C 1.54258 * 110.03349 * 121.42213 * 2 1 3 8 8 H 1.08997 * 110.60391 * 24.15755 * 7 2 1 9 9 C 1.53005 * 110.48380 * 261.56790 * 7 2 1 10 10 C 1.50703 * 109.47128 * 178.76944 * 9 7 2 11 11 O 1.21283 * 120.00006 * 0.02562 * 10 9 7 12 12 N 1.34775 * 120.00069 * 179.97438 * 10 9 7 13 13 C 1.46506 * 119.99877 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.46748 * 180.02562 * 13 12 10 15 15 C 1.52990 * 109.47546 * 59.99983 * 14 13 12 16 16 C 1.53005 * 109.47190 * 299.99570 * 14 13 12 17 17 C 1.53004 * 109.47000 * 180.02562 * 14 13 12 18 18 C 1.50701 * 109.47211 * 180.02562 * 17 14 13 19 19 H 1.08002 * 119.99761 * 359.97438 * 18 17 14 20 20 C 1.37871 * 119.99694 * 180.27574 * 18 17 14 21 21 N 1.31523 * 119.99908 * 179.72112 * 20 18 17 22 22 Si 1.86800 * 120.00405 * 359.71709 * 20 18 17 23 23 H 1.48500 * 109.47210 * 90.00069 * 22 20 18 24 24 H 1.48504 * 109.47424 * 210.00300 * 22 20 18 25 25 H 1.48502 * 109.46888 * 330.00390 * 22 20 18 26 26 H 1.09002 * 109.46821 * 298.58347 * 1 2 3 27 27 H 1.08997 * 109.47398 * 58.57442 * 1 2 3 28 28 H 1.08992 * 109.47277 * 178.58262 * 1 2 3 29 29 H 1.08997 * 110.03920 * 121.42630 * 4 2 1 30 30 H 1.09007 * 110.07359 * 0.02562 * 4 2 1 31 31 H 1.08994 * 110.48984 * 217.71331 * 5 4 2 32 32 H 1.09003 * 110.60318 * 95.12156 * 5 4 2 33 33 H 1.08997 * 110.75597 * 279.62613 * 6 5 4 34 34 H 1.09001 * 110.75860 * 156.26081 * 6 5 4 35 35 H 1.08994 * 109.46778 * 58.77368 * 9 7 2 36 36 H 1.08998 * 109.47208 * 298.77431 * 9 7 2 37 37 H 0.97002 * 120.00050 * 0.02562 * 12 10 9 38 38 H 1.08995 * 109.46761 * 60.00339 * 13 12 10 39 39 H 1.08998 * 109.46975 * 300.00637 * 13 12 10 40 40 H 1.09005 * 109.47428 * 179.97438 * 15 14 13 41 41 H 1.09004 * 109.47351 * 299.99974 * 15 14 13 42 42 H 1.09006 * 109.47240 * 60.00039 * 15 14 13 43 43 H 1.08995 * 109.47438 * 300.00908 * 16 14 13 44 44 H 1.09004 * 109.46658 * 60.00669 * 16 14 13 45 45 H 1.08996 * 109.47069 * 180.02562 * 16 14 13 46 46 H 1.09000 * 109.47211 * 59.99130 * 17 14 13 47 47 H 1.09007 * 109.46376 * 299.99672 * 17 14 13 48 48 H 0.96995 * 120.00181 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0571 -0.7534 -1.2338 5 6 2.8874 -1.9406 -0.7038 6 6 3.3137 -1.5008 0.7189 7 6 2.0585 -0.7555 1.2367 8 1 1.3153 -1.4660 1.5987 9 6 2.4394 0.2296 2.3437 10 6 2.9234 -0.5329 3.5501 11 8 2.9606 -1.7449 3.5266 12 7 3.3160 0.1321 4.6547 13 6 3.7871 -0.6092 5.8273 14 6 4.1678 0.3759 6.9342 15 6 2.9444 1.2112 7.3166 16 6 5.2802 1.2999 6.4342 17 6 4.6604 -0.3982 8.1586 18 6 5.0349 0.5721 9.2492 19 1 4.9322 1.6347 9.0852 20 6 5.5144 0.1036 10.4539 21 7 5.8464 0.9506 11.4038 22 14 5.6925 -1.7342 10.7373 23 1 7.0462 -2.1718 10.3116 24 1 5.5065 -2.0330 12.1800 25 1 4.6662 -2.4588 9.9454 26 1 -0.3633 0.4917 0.9024 27 1 -0.3634 0.5358 -0.8769 28 1 -0.3633 -1.0273 -0.0254 29 1 2.6866 -0.0953 -1.8326 30 1 1.2233 -1.1190 -1.8333 31 1 3.7636 -2.1037 -1.3312 32 1 2.2790 -2.8439 -0.6575 33 1 4.1710 -0.8291 0.6749 34 1 3.5326 -2.3679 1.3420 35 1 1.5678 0.8249 2.6158 36 1 3.2320 0.8876 1.9876 37 1 3.2866 1.1015 4.6733 38 1 4.6585 -1.2045 5.5547 39 1 2.9946 -1.2672 6.1836 40 1 3.2156 1.9128 8.1056 41 1 2.5939 1.7627 6.4442 42 1 2.1520 0.5529 7.6729 43 1 6.1518 0.7048 6.1617 44 1 4.9296 1.8514 5.5618 45 1 5.5517 2.0014 7.2230 46 1 5.5321 -0.9931 7.8858 47 1 3.8682 -1.0567 8.5149 48 1 6.1833 0.6210 12.2515 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345896337.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:45 Heat of formation + Delta-G solvation = -84.975946 kcal Electronic energy + Delta-G solvation = -22634.475557 eV Core-core repulsion = 19494.382519 eV Total energy + Delta-G solvation = -3140.093038 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.01594 -38.50419 -37.07707 -33.60758 -32.19488 -31.59644 -31.36905 -27.91235 -27.01440 -26.56480 -25.74608 -24.38531 -22.36209 -20.83526 -20.08164 -19.66440 -18.23064 -16.97847 -16.57016 -15.98572 -15.48223 -15.15130 -14.92920 -14.19053 -14.12150 -13.81310 -13.62043 -13.44058 -13.25058 -12.99456 -12.71706 -12.57841 -12.27528 -12.23996 -11.91904 -11.25296 -11.15573 -11.10366 -11.09376 -11.01247 -10.90389 -10.74878 -10.65184 -10.62205 -10.57558 -10.48757 -9.97398 -9.81964 -9.72698 -9.36860 -8.99578 -8.75571 -8.53960 -6.04785 -4.02064 2.83069 3.31241 3.39157 3.42577 3.43529 4.35651 4.43525 4.45320 4.50463 4.93443 5.02132 5.10625 5.13067 5.24854 5.27905 5.33675 5.37745 5.40196 5.50858 5.51999 5.54484 5.63282 5.64574 5.71181 5.80375 5.87417 5.96197 5.97877 6.10893 6.12278 6.17090 6.19400 6.24777 6.31647 6.37063 6.50424 6.58846 6.72034 6.90951 7.00864 7.04627 7.19966 7.36424 7.71081 7.80382 8.43372 8.52623 8.99194 9.58018 11.07971 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.035953 B = 0.003016 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.600337 B = 9282.548451 C = 9602.732694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 H 0.071 0.929 4 C -0.120 4.120 5 C -0.126 4.126 6 C -0.118 4.118 7 C -0.070 4.070 8 H 0.082 0.918 9 C -0.135 4.135 10 C 0.506 3.494 11 O -0.544 6.544 12 N -0.724 5.724 13 C 0.126 3.874 14 C -0.063 4.063 15 C -0.128 4.128 16 C -0.128 4.128 17 C -0.002 4.002 18 C -0.511 4.511 19 H 0.078 0.922 20 C 0.066 3.934 21 N -0.904 5.904 22 Si 0.875 3.125 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.265 1.265 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.398 0.602 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.072 0.928 41 H 0.031 0.969 42 H 0.046 0.954 43 H 0.046 0.954 44 H 0.031 0.969 45 H 0.072 0.928 46 H 0.013 0.987 47 H 0.018 0.982 48 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.381 0.000 -23.350 24.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 H 0.090 0.910 4 C -0.158 4.158 5 C -0.163 4.163 6 C -0.155 4.155 7 C -0.089 4.089 8 H 0.101 0.899 9 C -0.175 4.175 10 C 0.292 3.708 11 O -0.422 6.422 12 N -0.376 5.376 13 C 0.003 3.997 14 C -0.064 4.064 15 C -0.185 4.185 16 C -0.186 4.186 17 C -0.040 4.040 18 C -0.549 4.549 19 H 0.096 0.904 20 C -0.135 4.135 21 N -0.543 5.543 22 Si 0.702 3.298 23 H -0.204 1.204 24 H -0.215 1.215 25 H -0.190 1.190 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.098 0.902 35 H 0.108 0.892 36 H 0.109 0.891 37 H 0.234 0.766 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.091 0.909 41 H 0.050 0.950 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.050 0.950 45 H 0.091 0.909 46 H 0.032 0.968 47 H 0.036 0.964 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.286 -0.866 -23.172 24.624 hybrid contribution 0.193 -0.432 0.411 0.627 sum -8.094 -1.298 -22.760 24.191 Atomic orbital electron populations 1.21888 0.95082 1.01795 1.01455 1.21822 0.95613 0.99374 0.94515 0.91009 1.22213 0.99328 0.97138 0.97077 1.22354 0.99318 0.97905 0.96758 1.22565 0.96732 1.00776 0.95453 1.21802 0.98195 0.96115 0.92785 0.89947 1.21763 1.02522 0.99165 0.94068 1.20659 0.77499 0.88409 0.84185 1.90669 1.54505 1.14122 1.82913 1.46222 1.66133 1.10591 1.14639 1.21601 0.98927 0.94627 0.84552 1.20685 0.95697 0.95247 0.94727 1.21767 0.96715 0.99905 1.00155 1.21772 0.97644 0.99497 0.99650 1.19593 0.95829 0.95975 0.92602 1.21082 1.42584 0.94493 0.96696 0.90403 1.25001 0.94968 0.97380 0.96106 1.69904 1.44780 1.34197 1.05455 0.86856 0.79012 0.86634 0.77255 1.20373 1.21500 1.18998 0.92692 0.92891 0.92609 0.92094 0.91940 0.92024 0.91809 0.92077 0.90225 0.89201 0.89129 0.76633 0.91988 0.91992 0.90906 0.95003 0.93450 0.93458 0.95010 0.90911 0.96845 0.96398 0.92796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 8.84 37.16 0.33 -0.72 16 2 C -0.09 -0.75 3.07 -89.51 -0.27 -1.02 16 3 H 0.07 0.52 7.84 -51.93 -0.41 0.12 16 4 C -0.12 -0.92 6.46 -25.61 -0.17 -1.08 16 5 C -0.13 -1.10 6.83 -25.07 -0.17 -1.27 16 6 C -0.12 -1.24 5.63 -24.74 -0.14 -1.38 16 7 C -0.07 -0.69 2.01 -88.96 -0.18 -0.87 16 8 H 0.08 0.95 7.73 -51.93 -0.40 0.55 16 9 C -0.14 -1.30 5.06 -27.88 -0.14 -1.44 16 10 C 0.51 6.93 7.61 -10.98 -0.08 6.85 16 11 O -0.54 -9.45 14.50 5.56 0.08 -9.37 16 12 N -0.72 -9.82 4.96 -60.29 -0.30 -10.12 16 13 C 0.13 2.10 4.56 -4.04 -0.02 2.09 16 14 C -0.06 -1.15 0.54 -154.51 -0.08 -1.23 16 15 C -0.13 -2.20 8.05 37.15 0.30 -1.90 16 16 C -0.13 -2.20 8.05 37.16 0.30 -1.90 16 17 C 0.00 -0.05 3.11 -27.88 -0.09 -0.14 16 18 C -0.51 -13.65 8.20 -34.44 -0.28 -13.93 16 19 H 0.08 2.20 5.92 -52.49 -0.31 1.89 16 20 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 21 N -0.90 -27.23 13.96 55.43 0.77 -26.46 16 22 Si 0.87 21.55 27.46 -169.99 -4.67 16.88 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 25 H -0.27 -6.34 6.55 56.52 0.37 -5.97 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.44 7.67 -51.93 -0.40 0.05 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.63 8.02 -51.93 -0.42 0.21 16 34 H 0.08 1.03 7.06 -51.93 -0.37 0.67 16 35 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.09 0.74 8.10 -51.93 -0.42 0.32 16 37 H 0.40 4.55 6.16 -40.82 -0.25 4.30 16 38 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.07 1.41 6.62 -51.93 -0.34 1.06 16 41 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 42 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 44 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 45 H 0.07 1.41 6.62 -51.93 -0.34 1.06 16 46 H 0.01 0.31 7.56 -51.93 -0.39 -0.08 16 47 H 0.02 0.42 7.21 -51.93 -0.37 0.04 16 48 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 363.24 15.07 5.47 5.47 Total: -1.00 -30.43 363.24 -8.39 -38.82 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -8.96 Total: 0.94 kcal Atomic # 6 Polarization: -15.37 SS G_CDS: -0.80 Total: -16.17 kcal Atomic # 7 Polarization: -37.05 SS G_CDS: 0.47 Total: -36.58 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.08 Total: -9.37 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.67 Total: 16.88 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.43 -8.39 -38.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345896337.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.155 kcal (2) G-P(sol) polarization free energy of solvation -30.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds