Wall clock time and date at job start Tue Mar 31 2020 05:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 110.01716 * 2 1 4 4 C 1.53870 * 110.03660 * 121.39570 * 2 1 3 5 5 C 1.54265 * 106.60025 * 119.28335 * 4 2 1 6 6 C 1.54891 * 104.19500 * 23.61363 * 5 4 2 7 7 C 1.54269 * 110.03270 * 238.56604 * 2 1 3 8 8 H 1.09000 * 110.48482 * 335.77919 * 7 2 1 9 9 C 1.52996 * 110.49158 * 98.42446 * 7 2 1 10 10 C 1.50699 * 109.47541 * 184.99872 * 9 7 2 11 11 O 1.21280 * 119.99716 * 359.97438 * 10 9 7 12 12 N 1.34772 * 120.00310 * 179.97438 * 10 9 7 13 13 C 1.46500 * 120.00462 * 179.97438 * 12 10 9 14 14 C 1.52992 * 109.47345 * 180.02562 * 13 12 10 15 15 C 1.53005 * 109.47239 * 300.00225 * 14 13 12 16 16 C 1.52998 * 109.47176 * 60.00345 * 14 13 12 17 17 C 1.53004 * 109.47177 * 180.02562 * 14 13 12 18 18 C 1.50694 * 109.47028 * 180.02562 * 17 14 13 19 19 H 1.08004 * 120.00518 * 359.97438 * 18 17 14 20 20 C 1.37887 * 119.99863 * 180.02562 * 18 17 14 21 21 N 1.31510 * 119.99637 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00122 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47293 * 89.99404 * 22 20 18 24 24 H 1.48501 * 109.47255 * 209.99834 * 22 20 18 25 25 H 1.48502 * 109.47085 * 329.99569 * 22 20 18 26 26 H 1.09002 * 109.47153 * 300.05645 * 1 2 3 27 27 H 1.09001 * 109.46832 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47261 * 60.05817 * 1 2 3 29 29 H 1.08995 * 110.03570 * 238.57425 * 4 2 1 30 30 H 1.09004 * 110.02954 * 359.97438 * 4 2 1 31 31 H 1.09002 * 110.48891 * 142.29173 * 5 4 2 32 32 H 1.09003 * 110.48710 * 264.93202 * 5 4 2 33 33 H 1.08994 * 110.75590 * 80.37146 * 6 5 4 34 34 H 1.08999 * 110.75483 * 203.74396 * 6 5 4 35 35 H 1.08997 * 109.47050 * 305.00241 * 9 7 2 36 36 H 1.09007 * 109.47155 * 64.99893 * 9 7 2 37 37 H 0.97003 * 119.99963 * 0.02562 * 12 10 9 38 38 H 1.08997 * 109.47220 * 300.00584 * 13 12 10 39 39 H 1.09004 * 109.46250 * 60.00099 * 13 12 10 40 40 H 1.09001 * 109.47365 * 60.00071 * 15 14 13 41 41 H 1.08997 * 109.47207 * 180.02562 * 15 14 13 42 42 H 1.09000 * 109.47185 * 299.99913 * 15 14 13 43 43 H 1.08997 * 109.47046 * 59.99864 * 16 14 13 44 44 H 1.08997 * 109.47111 * 179.97438 * 16 14 13 45 45 H 1.09001 * 109.46933 * 299.99626 * 16 14 13 46 46 H 1.08997 * 109.47057 * 300.00143 * 17 14 13 47 47 H 1.09000 * 109.47197 * 60.00118 * 17 14 13 48 48 H 0.97008 * 119.99669 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0572 -0.7531 1.2339 5 6 2.8875 -1.9403 0.7042 6 6 3.3137 -1.5009 -0.7187 7 6 2.0584 -0.7559 -1.2367 8 1 1.3143 -1.4665 -1.5961 9 6 2.4392 0.2289 -2.3440 10 6 2.8351 -0.5349 -3.5813 11 8 2.8152 -1.7476 -3.5776 12 7 3.2113 0.1295 -4.6918 13 6 3.5968 -0.6130 -5.8945 14 6 3.9773 0.3718 -7.0018 15 6 2.7802 1.2703 -7.3189 16 6 5.1526 1.2336 -6.5360 17 6 4.3793 -0.4037 -8.2580 18 6 4.7548 0.5663 -9.3484 19 1 4.7107 1.6296 -9.1641 20 6 5.1536 0.0964 -10.5819 21 7 5.2067 -1.1983 -10.8064 22 14 5.6197 1.2987 -11.9333 23 1 7.0726 1.5948 -11.8529 24 1 5.3088 0.7008 -13.2566 25 1 4.8481 2.5563 -11.7648 26 1 -0.3633 0.5147 0.8895 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5129 -0.8905 29 1 2.6867 -0.0947 1.8324 30 1 1.2230 -1.1182 1.8331 31 1 3.7638 -2.1032 1.3316 32 1 2.2772 -2.8423 0.6581 33 1 4.1710 -0.8292 -0.6749 34 1 3.5325 -2.3683 -1.3415 35 1 1.5865 0.8693 -2.5696 36 1 3.2768 0.8426 -2.0123 37 1 3.2276 1.0994 -4.6947 38 1 4.4498 -1.2528 -5.6687 39 1 2.7595 -1.2273 -6.2260 40 1 2.4934 1.8228 -6.4241 41 1 3.0512 1.9716 -8.1081 42 1 1.9429 0.6563 -7.6507 43 1 6.0054 0.5935 -6.3101 44 1 5.4240 1.9349 -7.3251 45 1 4.8658 1.7861 -5.6412 46 1 5.2320 -1.0440 -8.0324 47 1 3.5418 -1.0174 -8.5897 48 1 5.4877 -1.5289 -11.6741 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345896339.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:48 Heat of formation + Delta-G solvation = -88.685354 kcal Electronic energy + Delta-G solvation = -22571.781846 eV Core-core repulsion = 19431.527956 eV Total energy + Delta-G solvation = -3140.253890 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.94420 -38.45144 -36.96516 -33.55486 -32.18612 -31.53807 -31.34547 -27.33902 -26.83045 -26.51575 -25.70757 -24.37935 -22.71541 -20.81284 -20.02426 -19.63067 -18.25908 -16.68901 -16.32056 -15.87985 -15.41989 -15.06615 -14.86990 -14.47912 -14.07670 -13.76965 -13.54644 -13.29794 -13.08248 -12.92567 -12.71938 -12.49294 -12.14710 -12.06549 -11.86181 -11.16926 -11.10402 -11.06498 -11.01728 -10.87979 -10.85691 -10.70824 -10.63995 -10.61480 -10.54315 -10.40003 -10.25434 -9.87606 -9.64633 -9.13819 -8.92181 -8.66782 -8.36341 -6.00339 -4.01639 2.89961 3.30411 3.37398 3.38917 3.50322 4.38634 4.44323 4.46662 4.53879 4.98361 5.05598 5.13937 5.15629 5.27921 5.35151 5.36982 5.42790 5.47111 5.55930 5.57684 5.63475 5.66871 5.73527 5.75489 5.83204 5.90680 5.98778 6.00853 6.17159 6.19170 6.23246 6.25532 6.31383 6.39862 6.40462 6.59404 6.62565 6.79595 7.06405 7.07201 7.13281 7.63841 7.76301 7.81167 7.98502 8.40065 8.51360 9.03221 9.61448 11.11148 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.042638 B = 0.002821 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.528627 B = 9924.181638 C =10136.819381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 H 0.071 0.929 4 C -0.120 4.120 5 C -0.125 4.125 6 C -0.118 4.118 7 C -0.071 4.071 8 H 0.084 0.916 9 C -0.135 4.135 10 C 0.505 3.495 11 O -0.544 6.544 12 N -0.724 5.724 13 C 0.128 3.872 14 C -0.073 4.073 15 C -0.127 4.127 16 C -0.126 4.126 17 C 0.036 3.964 18 C -0.511 4.511 19 H 0.059 0.941 20 C 0.056 3.944 21 N -0.895 5.895 22 Si 0.889 3.111 23 H -0.282 1.282 24 H -0.287 1.287 25 H -0.275 1.275 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.077 0.923 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.397 0.603 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.028 0.972 41 H 0.066 0.934 42 H 0.047 0.953 43 H 0.047 0.953 44 H 0.066 0.934 45 H 0.028 0.972 46 H 0.018 0.982 47 H 0.018 0.982 48 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.707 4.750 21.807 23.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 H 0.090 0.910 4 C -0.158 4.158 5 C -0.163 4.163 6 C -0.155 4.155 7 C -0.089 4.089 8 H 0.102 0.898 9 C -0.175 4.175 10 C 0.291 3.709 11 O -0.422 6.422 12 N -0.376 5.376 13 C 0.005 3.995 14 C -0.073 4.073 15 C -0.184 4.184 16 C -0.184 4.184 17 C -0.002 4.002 18 C -0.549 4.549 19 H 0.077 0.923 20 C -0.145 4.145 21 N -0.534 5.534 22 Si 0.717 3.283 23 H -0.208 1.208 24 H -0.213 1.213 25 H -0.200 1.200 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.096 0.904 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.232 0.768 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.047 0.953 41 H 0.085 0.915 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.085 0.915 45 H 0.047 0.953 46 H 0.036 0.964 47 H 0.036 0.964 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.683 3.744 21.659 22.974 hybrid contribution 0.327 1.097 -0.940 1.481 sum -6.356 4.841 20.719 22.206 Atomic orbital electron populations 1.21891 0.95092 1.01833 1.01407 1.21825 0.95614 0.99357 0.94547 0.91050 1.22212 0.99318 0.97144 0.97084 1.22351 0.99308 0.97937 0.96698 1.22558 0.96777 1.00699 0.95516 1.21813 0.98221 0.96161 0.92746 0.89797 1.21761 1.02832 0.99142 0.93776 1.20645 0.77195 0.88442 0.84579 1.90675 1.53415 1.14073 1.84013 1.46255 1.67962 1.10451 1.12946 1.21591 0.99750 0.94596 0.83524 1.20899 0.95089 0.95398 0.95924 1.21757 0.97394 0.99494 0.99739 1.21754 0.97737 0.99651 0.99235 1.19088 0.96638 0.94923 0.89506 1.21186 1.44399 0.92955 0.96399 0.92271 1.25020 0.95910 0.94965 0.98634 1.69968 1.47990 1.12189 1.23246 0.86646 0.78749 0.81282 0.81619 1.20774 1.21332 1.19954 0.92910 0.92584 0.92707 0.92112 0.91940 0.92002 0.91772 0.92030 0.90393 0.89257 0.89190 0.76797 0.91975 0.91974 0.95257 0.91466 0.93415 0.93411 0.91474 0.95251 0.96383 0.96370 0.93036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 8.84 37.16 0.33 -0.77 16 2 C -0.09 -0.77 3.07 -89.50 -0.27 -1.05 16 3 H 0.07 0.54 7.84 -51.93 -0.41 0.13 16 4 C -0.12 -0.94 6.46 -25.62 -0.17 -1.11 16 5 C -0.13 -1.12 6.83 -25.07 -0.17 -1.29 16 6 C -0.12 -1.27 5.75 -24.74 -0.14 -1.41 16 7 C -0.07 -0.72 1.98 -88.96 -0.18 -0.90 16 8 H 0.08 1.01 7.61 -51.93 -0.40 0.62 16 9 C -0.14 -1.36 5.05 -27.89 -0.14 -1.50 16 10 C 0.51 7.25 7.64 -10.99 -0.08 7.17 16 11 O -0.54 -9.89 14.73 5.56 0.08 -9.81 16 12 N -0.72 -10.33 4.96 -60.30 -0.30 -10.63 16 13 C 0.13 2.28 4.56 -4.05 -0.02 2.26 16 14 C -0.07 -1.37 0.54 -154.51 -0.08 -1.46 16 15 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 16 C -0.13 -2.20 8.05 37.16 0.30 -1.91 16 17 C 0.04 0.88 4.04 -27.88 -0.11 0.77 16 18 C -0.51 -13.56 7.65 -34.44 -0.26 -13.83 16 19 H 0.06 1.51 5.68 -52.48 -0.30 1.21 16 20 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 21 N -0.89 -26.48 13.29 55.43 0.74 -25.74 16 22 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.46 7.67 -51.93 -0.40 0.06 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.64 7.96 -51.93 -0.41 0.22 16 34 H 0.08 1.03 7.29 -51.93 -0.38 0.65 16 35 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.09 0.77 8.02 -51.92 -0.42 0.35 16 37 H 0.40 4.75 6.16 -40.82 -0.25 4.50 16 38 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 39 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 40 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 41 H 0.07 1.27 6.62 -51.93 -0.34 0.92 16 42 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 43 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 44 H 0.07 1.26 6.62 -51.93 -0.34 0.91 16 45 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 46 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 367.14 15.07 5.53 5.53 Total: -1.00 -30.22 367.14 -8.76 -38.98 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -8.99 Total: 0.98 kcal Atomic # 6 Polarization: -14.68 SS G_CDS: -0.80 Total: -15.49 kcal Atomic # 7 Polarization: -36.81 SS G_CDS: 0.44 Total: -36.37 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.08 Total: -9.81 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.22 -8.76 -38.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345896339.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.704 kcal (2) G-P(sol) polarization free energy of solvation -30.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds