Wall clock time and date at job start Tue Mar 31 2020 05:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 C 1.53006 * 109.46974 * 240.00393 * 2 1 3 5 5 C 1.52997 * 109.46974 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.47415 * 59.99631 * 5 4 2 7 7 C 1.52996 * 109.46972 * 300.00140 * 6 5 4 8 8 H 1.09001 * 109.46993 * 179.97438 * 7 6 5 9 9 C 1.50698 * 109.47188 * 299.99371 * 7 6 5 10 10 O 1.21286 * 119.99758 * 120.00266 * 9 7 6 11 11 N 1.34770 * 120.00019 * 300.00534 * 9 7 6 12 12 C 1.46507 * 119.99912 * 180.02562 * 11 9 7 13 13 C 1.52992 * 109.47485 * 179.97438 * 12 11 9 14 14 C 1.53006 * 109.47223 * 59.99555 * 13 12 11 15 15 C 1.52999 * 109.46961 * 300.00204 * 13 12 11 16 16 C 1.52997 * 109.47482 * 179.97438 * 13 12 11 17 17 C 1.50701 * 109.47212 * 179.97438 * 16 13 12 18 18 H 1.07998 * 120.00129 * 0.02562 * 17 16 13 19 19 C 1.37880 * 119.99861 * 179.97438 * 17 16 13 20 20 N 1.31512 * 119.99594 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 119.99875 * 0.02562 * 19 17 16 22 22 H 1.48504 * 109.47061 * 90.00257 * 21 19 17 23 23 H 1.48497 * 109.46906 * 209.99430 * 21 19 17 24 24 H 1.48498 * 109.47403 * 329.99876 * 21 19 17 25 25 C 1.52989 * 109.47524 * 120.00229 * 2 1 3 26 26 H 1.09002 * 109.47045 * 299.99907 * 1 2 3 27 27 H 1.09001 * 109.47375 * 59.99983 * 1 2 3 28 28 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46866 * 299.99774 * 4 2 1 30 30 H 1.09001 * 109.47377 * 59.99625 * 4 2 1 31 31 H 1.09002 * 109.47045 * 179.97438 * 5 4 2 32 32 H 1.09000 * 109.47140 * 299.99606 * 5 4 2 33 33 H 1.08996 * 109.47407 * 179.97438 * 6 5 4 34 34 H 1.09000 * 109.46986 * 59.99882 * 6 5 4 35 35 H 0.96992 * 120.00518 * 359.97438 * 11 9 7 36 36 H 1.09002 * 109.47280 * 59.99618 * 12 11 9 37 37 H 1.09001 * 109.46702 * 299.99811 * 12 11 9 38 38 H 1.08993 * 109.46955 * 180.02562 * 14 13 12 39 39 H 1.09000 * 109.47050 * 300.00346 * 14 13 12 40 40 H 1.09001 * 109.47002 * 60.00080 * 14 13 12 41 41 H 1.09002 * 109.46716 * 299.99630 * 15 13 12 42 42 H 1.09000 * 109.47486 * 59.99547 * 15 13 12 43 43 H 1.09001 * 109.47362 * 180.02562 * 15 13 12 44 44 H 1.09002 * 109.47153 * 59.99783 * 16 13 12 45 45 H 1.09001 * 109.46832 * 299.99974 * 16 13 12 46 46 H 0.97002 * 119.99739 * 180.02562 * 20 19 17 47 47 H 1.09000 * 109.47099 * 59.99746 * 25 2 1 48 48 H 1.09001 * 109.47379 * 300.00536 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 3.5699 -0.7218 -1.2490 6 6 4.0795 -1.4434 0.0002 7 6 3.5695 -0.7222 1.2494 8 1 3.9321 -1.2365 2.1394 9 6 4.0724 0.6984 1.2498 10 8 3.2846 1.6206 1.2498 11 7 5.3975 0.9442 1.2501 12 6 5.8864 2.3253 1.2510 13 6 7.4163 2.3248 1.2518 14 6 7.9267 1.6039 0.0024 15 6 7.9254 1.6027 2.5009 16 6 7.9268 3.7670 1.2521 17 6 9.4339 3.7665 1.2535 18 1 9.9735 2.8310 1.2537 19 6 10.1237 4.9603 1.2535 20 7 11.4388 4.9598 1.2542 21 14 9.1902 6.5783 1.2525 22 1 8.9421 7.0076 2.6524 23 1 9.9936 7.6128 0.5527 24 1 7.8930 6.4011 0.5518 25 6 2.0400 -0.7212 1.2491 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6766 -1.7489 -1.2494 30 1 1.6766 -0.2074 -2.1393 31 1 3.9332 -1.2359 -2.1388 32 1 3.9336 0.3058 -1.2488 33 1 5.1694 -1.4442 0.0002 34 1 3.7158 -2.4709 0.0000 35 1 6.0275 0.2068 1.2504 36 1 5.5231 2.8387 2.1413 37 1 5.5233 2.8397 0.3613 38 1 9.0167 1.6031 0.0033 39 1 7.5630 0.5763 0.0018 40 1 7.5640 2.1182 -0.8875 41 1 7.5618 2.1162 3.3909 42 1 7.5617 0.5751 2.5002 43 1 9.0154 1.6027 2.5017 44 1 7.5632 4.2810 2.1419 45 1 7.5641 4.2810 0.3620 46 1 11.9241 5.7997 1.2546 47 1 1.6767 -1.7489 1.2491 48 1 1.6767 -0.2075 2.1392 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346000023.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:29 Heat of formation + Delta-G solvation = -83.928450 kcal Electronic energy + Delta-G solvation = -23422.812872 eV Core-core repulsion = 20282.765257 eV Total energy + Delta-G solvation = -3140.047615 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.55736 -38.05497 -36.76528 -33.86602 -32.73372 -31.93614 -31.07107 -27.85264 -26.66437 -26.56564 -26.20543 -23.57490 -22.25611 -21.76811 -20.56601 -19.56473 -18.00821 -16.90919 -16.38101 -15.94789 -15.51029 -15.04994 -14.54652 -14.27388 -14.16278 -13.77696 -13.63249 -13.38248 -13.29038 -12.72699 -12.53761 -12.43588 -12.27734 -12.14271 -12.06353 -11.90007 -11.56024 -11.25865 -11.13795 -11.06845 -11.00786 -10.64756 -10.59654 -10.49102 -10.24549 -10.14372 -9.97153 -9.77244 -9.64882 -9.25983 -8.99560 -8.72698 -8.54102 -6.04935 -4.02152 2.81931 3.31094 3.39069 3.43218 3.43401 4.45187 4.50004 4.56915 4.59459 4.91606 5.02064 5.08554 5.24394 5.27813 5.28791 5.39024 5.40770 5.45843 5.52999 5.55441 5.63560 5.70367 5.73738 5.78600 5.85056 5.89112 6.08166 6.10523 6.11242 6.12077 6.17686 6.20266 6.27269 6.31490 6.46131 6.58408 6.58854 6.74933 6.91315 7.00705 7.04478 7.19838 7.36285 7.71306 7.80411 8.44039 8.52542 8.99140 9.57908 11.07834 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.029660 B = 0.003687 C = 0.003547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.795526 B = 7593.138132 C = 7892.972044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.108 4.108 3 H 0.101 0.899 4 C -0.112 4.112 5 C -0.124 4.124 6 C -0.109 4.109 7 C -0.111 4.111 8 H 0.093 0.907 9 C 0.514 3.486 10 O -0.542 6.542 11 N -0.721 5.721 12 C 0.126 3.874 13 C -0.063 4.063 14 C -0.128 4.128 15 C -0.128 4.128 16 C -0.002 4.002 17 C -0.511 4.511 18 H 0.078 0.922 19 C 0.067 3.933 20 N -0.904 5.904 21 Si 0.875 3.125 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.265 1.265 25 C -0.090 4.090 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.047 0.953 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.398 0.602 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.072 0.928 39 H 0.031 0.969 40 H 0.046 0.954 41 H 0.046 0.954 42 H 0.031 0.969 43 H 0.072 0.928 44 H 0.013 0.987 45 H 0.018 0.982 46 H 0.262 0.738 47 H 0.063 0.937 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.303 -14.709 -2.217 22.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.126 4.126 3 H 0.119 0.881 4 C -0.150 4.150 5 C -0.161 4.161 6 C -0.147 4.147 7 C -0.132 4.132 8 H 0.111 0.889 9 C 0.301 3.699 10 O -0.420 6.420 11 N -0.373 5.373 12 C 0.003 3.997 13 C -0.063 4.063 14 C -0.185 4.185 15 C -0.186 4.186 16 C -0.040 4.040 17 C -0.549 4.549 18 H 0.096 0.904 19 C -0.134 4.134 20 N -0.543 5.543 21 Si 0.702 3.298 22 H -0.204 1.204 23 H -0.215 1.215 24 H -0.190 1.190 25 C -0.128 4.128 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.234 0.766 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.091 0.909 39 H 0.050 0.950 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.050 0.950 43 H 0.091 0.909 44 H 0.031 0.969 45 H 0.036 0.964 46 H 0.072 0.928 47 H 0.082 0.918 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -17.702 -13.911 -2.219 22.623 hybrid contribution 0.037 0.633 0.064 0.637 sum -17.665 -13.278 -2.155 22.204 Atomic orbital electron populations 1.21780 0.95760 1.00976 1.01489 1.21425 0.95060 1.02395 0.93758 0.88054 1.21589 0.95173 1.00218 0.97984 1.21567 0.96087 1.01082 0.97381 1.21519 1.00486 0.99265 0.93411 1.21378 0.97983 0.93698 1.00138 0.88853 1.20534 0.82388 0.91172 0.75831 1.90611 1.55102 1.46467 1.49830 1.46208 1.06718 1.09789 1.74567 1.21604 0.95047 0.81489 1.01564 1.20683 0.90714 0.99229 0.95715 1.21763 1.02810 0.97119 0.96802 1.21772 1.02840 0.97127 0.96830 1.19587 0.97548 0.90350 0.96477 1.21083 0.89013 0.94376 1.50402 0.90403 1.24998 0.94679 0.99028 0.94727 1.69902 1.06226 1.26831 1.51358 0.86859 0.80447 0.83953 0.78516 1.20372 1.21495 1.19009 1.21330 0.92282 1.00182 0.98960 0.92819 0.93049 0.93353 0.92425 0.92289 0.91817 0.91740 0.91490 0.90971 0.76646 0.91993 0.91994 0.90928 0.95031 0.93451 0.93450 0.95034 0.90904 0.96863 0.96410 0.92797 0.91826 0.91495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.19 37.16 0.34 -1.01 16 2 C -0.11 -1.18 2.43 -90.62 -0.22 -1.40 16 3 H 0.10 1.43 5.51 -51.93 -0.29 1.15 16 4 C -0.11 -1.07 5.20 -26.73 -0.14 -1.21 16 5 C -0.12 -1.22 5.70 -26.73 -0.15 -1.37 16 6 C -0.11 -0.95 5.36 -26.73 -0.14 -1.09 16 7 C -0.11 -1.12 3.01 -91.80 -0.28 -1.40 16 8 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 9 C 0.51 7.06 5.64 -10.99 -0.06 7.00 16 10 O -0.54 -9.33 13.66 5.55 0.08 -9.25 16 11 N -0.72 -9.77 4.85 -60.29 -0.29 -10.06 16 12 C 0.13 2.09 4.56 -4.04 -0.02 2.07 16 13 C -0.06 -1.14 0.54 -154.51 -0.08 -1.22 16 14 C -0.13 -2.18 8.05 37.16 0.30 -1.88 16 15 C -0.13 -2.20 8.05 37.16 0.30 -1.90 16 16 C 0.00 -0.04 3.11 -27.88 -0.09 -0.13 16 17 C -0.51 -13.63 8.20 -34.44 -0.28 -13.91 16 18 H 0.08 2.19 5.92 -52.49 -0.31 1.88 16 19 C 0.07 1.88 5.47 -17.82 -0.10 1.79 16 20 N -0.90 -27.19 13.96 55.43 0.77 -26.42 16 21 Si 0.87 21.53 27.47 -169.99 -4.67 16.86 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16 25 C -0.09 -0.91 4.37 -26.77 -0.12 -1.02 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.78 7.22 -51.93 -0.37 0.41 16 33 H 0.07 0.55 7.57 -51.93 -0.39 0.16 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.40 4.63 5.58 -40.82 -0.23 4.40 16 36 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.07 1.40 6.62 -51.93 -0.34 1.06 16 39 H 0.03 0.43 6.86 -51.93 -0.36 0.08 16 40 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 43 H 0.07 1.41 6.62 -51.93 -0.34 1.06 16 44 H 0.01 0.30 7.57 -51.93 -0.39 -0.09 16 45 H 0.02 0.41 7.20 -51.93 -0.37 0.04 16 46 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 47 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 LS Contribution 355.35 15.07 5.36 5.36 Total: -1.00 -30.09 355.35 -8.34 -38.43 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -8.84 Total: 1.78 kcal Atomic # 6 Polarization: -15.94 SS G_CDS: -0.74 Total: -16.68 kcal Atomic # 7 Polarization: -36.97 SS G_CDS: 0.48 Total: -36.49 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: 0.08 Total: -9.25 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.67 Total: 16.86 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.09 -8.34 -38.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346000023.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.501 kcal (2) G-P(sol) polarization free energy of solvation -30.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds