Wall clock time and date at job start Tue Mar 31 2020 05:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.47221 * 2 1 4 4 C 1.52995 * 109.47401 * 239.99418 * 2 1 3 5 5 C 1.52998 * 109.47239 * 180.02562 * 4 2 1 6 6 C 1.52999 * 109.47306 * 59.99932 * 5 4 2 7 7 C 1.53003 * 109.46917 * 299.99999 * 6 5 4 8 8 H 1.08995 * 109.47325 * 299.99651 * 7 6 5 9 9 C 1.50705 * 109.46885 * 179.97438 * 7 6 5 10 10 O 1.21273 * 120.00270 * 239.99962 * 9 7 6 11 11 N 1.34781 * 119.99719 * 60.00680 * 9 7 6 12 12 C 1.46495 * 120.00121 * 180.02562 * 11 9 7 13 13 C 1.52998 * 109.47351 * 179.97438 * 12 11 9 14 14 C 1.52993 * 109.47592 * 59.99643 * 13 12 11 15 15 C 1.53003 * 109.46809 * 299.99405 * 13 12 11 16 16 C 1.52999 * 109.47303 * 179.97438 * 13 12 11 17 17 C 1.50702 * 109.47525 * 179.97438 * 16 13 12 18 18 H 1.08002 * 119.99441 * 0.02562 * 17 16 13 19 19 C 1.37871 * 120.00075 * 180.02562 * 17 16 13 20 20 N 1.31514 * 120.00481 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99886 * 179.73007 * 19 17 16 22 22 H 1.48502 * 109.46964 * 270.27509 * 21 19 17 23 23 H 1.48505 * 109.47036 * 30.26897 * 21 19 17 24 24 H 1.48490 * 109.47395 * 150.27411 * 21 19 17 25 25 C 1.53003 * 109.46971 * 60.00390 * 7 6 5 26 26 H 1.09001 * 109.47205 * 300.00670 * 1 2 3 27 27 H 1.09001 * 109.46758 * 60.00361 * 1 2 3 28 28 H 1.08995 * 109.46904 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46710 * 299.99871 * 4 2 1 30 30 H 1.09001 * 109.46983 * 60.00360 * 4 2 1 31 31 H 1.09001 * 109.47042 * 179.97438 * 5 4 2 32 32 H 1.08995 * 109.47215 * 300.00110 * 5 4 2 33 33 H 1.09003 * 109.47160 * 180.02562 * 6 5 4 34 34 H 1.09000 * 109.47527 * 59.99882 * 6 5 4 35 35 H 0.97003 * 120.00055 * 359.97438 * 11 9 7 36 36 H 1.09000 * 109.47717 * 59.99291 * 12 11 9 37 37 H 1.09007 * 109.47063 * 299.99781 * 12 11 9 38 38 H 1.08995 * 109.47584 * 180.02562 * 14 13 12 39 39 H 1.09008 * 109.46973 * 300.00553 * 14 13 12 40 40 H 1.09001 * 109.47156 * 59.99608 * 14 13 12 41 41 H 1.08995 * 109.47325 * 300.00444 * 15 13 12 42 42 H 1.09001 * 109.46873 * 60.00399 * 15 13 12 43 43 H 1.09003 * 109.47092 * 179.97438 * 15 13 12 44 44 H 1.09009 * 109.47378 * 59.99763 * 16 13 12 45 45 H 1.08998 * 109.47458 * 300.00225 * 16 13 12 46 46 H 0.97005 * 119.99656 * 359.72741 * 20 19 17 47 47 H 1.08995 * 109.47230 * 59.99739 * 25 7 6 48 48 H 1.09001 * 109.46882 * 179.97438 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5701 -0.7219 -1.2487 6 6 4.0796 -1.4433 0.0006 7 6 3.5695 -0.7219 1.2497 8 1 3.9332 0.3056 1.2499 9 6 4.0709 -1.4329 2.4803 10 8 3.2822 -1.8934 3.2782 11 7 5.3958 -1.5569 2.6941 12 6 5.8832 -2.2485 3.8900 13 6 7.4132 -2.2499 3.8904 14 6 7.9246 -0.8079 3.8912 15 6 7.9229 -2.9711 2.6410 16 6 7.9223 -2.9716 5.1397 17 6 9.4293 -2.9735 5.1399 18 1 9.9699 -2.5062 4.3300 19 6 10.1178 -3.5718 6.1738 20 7 9.4595 -4.1404 7.1601 21 14 11.9858 -3.5807 6.1701 22 1 12.4736 -4.7936 5.4656 23 1 12.4853 -2.3687 5.4723 24 1 12.4836 -3.5870 7.5691 25 6 2.0395 -0.7215 1.2494 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.6768 -1.7490 -1.2489 30 1 1.6768 -0.2076 -2.1391 31 1 3.9334 -1.2362 -2.1384 32 1 3.9338 0.3056 -1.2486 33 1 5.1696 -1.4433 0.0010 34 1 3.7159 -2.4709 0.0005 35 1 6.0267 -1.1888 2.0558 36 1 5.5193 -3.2760 3.8893 37 1 5.5198 -1.7350 4.7802 38 1 9.0145 -0.8089 3.8911 39 1 7.5619 -0.2933 3.0014 40 1 7.5614 -0.2941 4.7813 41 1 7.5586 -3.9983 2.6404 42 1 7.5602 -2.4565 1.7511 43 1 9.0129 -2.9717 2.6410 44 1 7.5580 -3.9991 5.1396 45 1 7.5592 -2.4576 6.0297 46 1 8.4895 -4.1354 7.1623 47 1 1.6759 -1.7490 1.2493 48 1 1.6761 -0.2079 2.1395 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346000024.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:31 Heat of formation + Delta-G solvation = -97.260430 kcal Electronic energy + Delta-G solvation = -22894.756302 eV Core-core repulsion = 19754.130569 eV Total energy + Delta-G solvation = -3140.625733 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.25675 -38.31152 -37.04059 -33.86047 -32.94995 -32.04058 -31.12804 -26.85609 -26.65593 -26.59542 -26.23054 -23.71474 -22.50108 -21.90810 -20.18731 -19.82412 -18.52938 -16.87532 -16.50504 -15.76221 -15.36591 -15.12540 -14.63612 -14.36677 -14.22639 -13.84810 -13.71522 -13.54827 -13.28095 -12.83944 -12.73580 -12.63768 -12.16957 -12.04367 -11.81942 -11.70388 -11.38519 -11.24097 -11.18984 -11.16605 -11.02591 -10.74969 -10.65795 -10.64612 -10.32989 -10.23965 -10.11972 -10.00146 -9.66442 -9.35980 -8.75612 -8.47321 -8.31846 -6.33492 -4.02626 2.80762 3.40485 3.43249 3.45952 3.61268 4.40384 4.45169 4.46787 4.54605 4.85244 4.86987 5.01461 5.10082 5.18524 5.25123 5.33675 5.40417 5.41286 5.43848 5.52979 5.54698 5.59663 5.64769 5.72739 5.75636 5.88552 5.94805 5.96439 6.00914 6.08796 6.12608 6.13319 6.20838 6.26850 6.30520 6.49874 6.54776 6.70699 6.95636 6.97927 7.02038 7.34289 7.49023 7.72962 8.21513 8.42563 8.47422 8.89828 9.68502 11.06492 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.040548 B = 0.003068 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.381434 B = 9123.277026 C = 9500.928453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.093 4.093 3 H 0.069 0.931 4 C -0.116 4.116 5 C -0.117 4.117 6 C -0.111 4.111 7 C -0.106 4.106 8 H 0.094 0.906 9 C 0.510 3.490 10 O -0.546 6.546 11 N -0.721 5.721 12 C 0.127 3.873 13 C -0.065 4.065 14 C -0.126 4.126 15 C -0.126 4.126 16 C 0.022 3.978 17 C -0.591 4.591 18 H 0.053 0.947 19 C 0.013 3.987 20 N -0.915 5.915 21 Si 1.068 2.932 22 H -0.289 1.289 23 H -0.289 1.289 24 H -0.285 1.285 25 C -0.093 4.093 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.398 0.602 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.068 0.932 39 H 0.030 0.970 40 H 0.046 0.954 41 H 0.046 0.954 42 H 0.030 0.970 43 H 0.068 0.932 44 H 0.008 0.992 45 H 0.008 0.992 46 H 0.269 0.731 47 H 0.069 0.931 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.801 9.169 -17.886 23.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.111 4.111 3 H 0.088 0.912 4 C -0.153 4.153 5 C -0.155 4.155 6 C -0.149 4.149 7 C -0.128 4.128 8 H 0.112 0.888 9 C 0.296 3.704 10 O -0.424 6.424 11 N -0.373 5.373 12 C 0.004 3.996 13 C -0.066 4.066 14 C -0.183 4.183 15 C -0.183 4.183 16 C -0.015 4.015 17 C -0.629 4.629 18 H 0.072 0.928 19 C -0.191 4.191 20 N -0.551 5.551 21 Si 0.897 3.103 22 H -0.216 1.216 23 H -0.216 1.216 24 H -0.211 1.211 25 C -0.131 4.131 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.233 0.767 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.049 0.951 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.049 0.951 43 H 0.087 0.913 44 H 0.027 0.973 45 H 0.027 0.973 46 H 0.080 0.920 47 H 0.088 0.912 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.029 8.327 -16.437 22.005 hybrid contribution -0.980 0.649 -1.075 1.593 sum -13.009 8.976 -17.512 23.590 Atomic orbital electron populations 1.21813 0.95136 1.01918 1.01545 1.21165 0.95584 0.99548 0.94838 0.91246 1.21624 0.95411 1.00868 0.97431 1.21524 0.95778 1.00766 0.97419 1.21536 1.00531 0.99766 0.93056 1.21352 0.97853 1.00444 0.93129 0.88823 1.20641 0.82486 0.79966 0.87327 1.90682 1.55393 1.48940 1.47383 1.46216 1.06682 1.58373 1.26016 1.21606 0.95117 0.96501 0.86395 1.20749 0.90676 0.96457 0.98705 1.21748 1.02439 0.94981 0.99153 1.21746 1.02424 0.99156 0.94959 1.19218 0.97077 0.94365 0.90838 1.21997 0.90989 1.40156 1.09797 0.92838 1.25789 1.06800 0.93670 0.92814 1.70743 1.10099 1.41967 1.32322 0.83546 0.74620 0.76039 0.76057 1.21576 1.21556 1.21112 1.21391 0.92432 1.01761 0.97480 0.92615 0.92807 0.92631 0.91871 0.92037 0.91638 0.91774 0.91435 0.91316 0.76693 0.92028 0.92023 0.91290 0.95149 0.93496 0.93493 0.95145 0.91306 0.97337 0.97328 0.92036 0.91198 0.91289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.19 37.16 0.34 -0.75 16 2 C -0.09 -0.75 2.72 -90.62 -0.25 -0.99 16 3 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 4 C -0.12 -0.85 5.20 -26.73 -0.14 -0.99 16 5 C -0.12 -0.86 5.92 -26.73 -0.16 -1.01 16 6 C -0.11 -1.00 5.10 -26.73 -0.14 -1.14 16 7 C -0.11 -1.13 2.53 -91.77 -0.23 -1.36 16 8 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 9 C 0.51 7.56 7.15 -10.98 -0.08 7.48 16 10 O -0.55 -10.34 15.98 5.56 0.09 -10.25 16 11 N -0.72 -10.47 4.85 -60.29 -0.29 -10.76 16 12 C 0.13 2.27 4.56 -4.05 -0.02 2.25 16 13 C -0.07 -1.25 0.54 -154.51 -0.08 -1.33 16 14 C -0.13 -2.24 8.05 37.15 0.30 -1.94 16 15 C -0.13 -2.22 8.05 37.16 0.30 -1.92 16 16 C 0.02 0.55 3.35 -27.88 -0.09 0.46 16 17 C -0.59 -15.86 7.65 -34.44 -0.26 -16.13 16 18 H 0.05 1.39 5.68 -52.49 -0.30 1.10 16 19 C 0.01 0.37 5.46 -17.82 -0.10 0.27 16 20 N -0.91 -27.83 13.65 55.43 0.76 -27.07 16 21 Si 1.07 24.95 29.90 -169.99 -5.08 19.87 16 22 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 25 C -0.09 -0.98 3.77 -26.73 -0.10 -1.08 16 26 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.57 7.56 -51.93 -0.39 0.18 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.40 4.89 5.58 -40.82 -0.23 4.66 16 36 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.07 1.33 6.62 -51.93 -0.34 0.99 16 39 H 0.03 0.43 6.86 -51.92 -0.36 0.08 16 40 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.03 0.43 6.86 -51.93 -0.36 0.08 16 43 H 0.07 1.32 6.62 -51.93 -0.34 0.97 16 44 H 0.01 0.22 8.01 -51.92 -0.42 -0.19 16 45 H 0.01 0.22 8.00 -51.93 -0.42 -0.19 16 46 H 0.27 8.20 7.22 -40.82 -0.29 7.90 16 47 H 0.07 0.83 8.10 -51.93 -0.42 0.41 16 48 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 LS Contribution 364.16 15.07 5.49 5.49 Total: -1.00 -31.05 364.16 -8.75 -39.80 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -9.00 Total: 1.11 kcal Atomic # 6 Polarization: -17.48 SS G_CDS: -0.71 Total: -18.18 kcal Atomic # 7 Polarization: -38.30 SS G_CDS: 0.46 Total: -37.84 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.09 Total: -10.25 kcal Atomic # 14 Polarization: 24.95 SS G_CDS: -5.08 Total: 19.87 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.05 -8.75 -39.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346000024.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.457 kcal (2) G-P(sol) polarization free energy of solvation -31.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds