Wall clock time and date at job start Tue Mar 31 2020 05:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 5 5 C 1.53002 * 109.47628 * 180.02562 * 4 2 1 6 6 C 1.53000 * 109.46806 * 300.00074 * 5 4 2 7 7 C 1.53002 * 109.46911 * 59.99917 * 6 5 4 8 8 H 1.09002 * 109.47067 * 59.99825 * 7 6 5 9 9 C 1.50701 * 109.47097 * 179.97438 * 7 6 5 10 10 O 1.21279 * 120.00251 * 119.99722 * 9 7 6 11 11 N 1.34777 * 120.00115 * 300.00121 * 9 7 6 12 12 C 1.46500 * 120.00376 * 179.97438 * 11 9 7 13 13 C 1.52997 * 109.47473 * 179.97438 * 12 11 9 14 14 C 1.53006 * 109.47127 * 300.00373 * 13 12 11 15 15 C 1.52999 * 109.47317 * 59.99884 * 13 12 11 16 16 C 1.52997 * 109.47232 * 180.02562 * 13 12 11 17 17 C 1.50703 * 109.47084 * 180.02562 * 16 13 12 18 18 H 1.08004 * 119.99786 * 0.02562 * 17 16 13 19 19 C 1.37880 * 119.99788 * 179.97438 * 17 16 13 20 20 N 1.31511 * 120.00327 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99600 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47033 * 60.00041 * 21 19 17 23 23 H 1.48503 * 109.46926 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.47356 * 299.99856 * 21 19 17 25 25 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 29 29 H 1.09001 * 109.47362 * 300.00732 * 4 2 1 30 30 H 1.09002 * 109.46716 * 60.00091 * 4 2 1 31 31 H 1.09001 * 109.47142 * 180.02562 * 5 4 2 32 32 H 1.09002 * 109.46838 * 59.99718 * 5 4 2 33 33 H 1.08992 * 109.47399 * 299.99952 * 6 5 4 34 34 H 1.09004 * 109.46724 * 179.97438 * 6 5 4 35 35 H 0.97004 * 120.00228 * 359.97438 * 11 9 7 36 36 H 1.09002 * 109.47129 * 300.00253 * 12 11 9 37 37 H 1.09001 * 109.46596 * 59.99898 * 12 11 9 38 38 H 1.09001 * 109.46801 * 59.99728 * 14 13 12 39 39 H 1.09000 * 109.47050 * 179.97438 * 14 13 12 40 40 H 1.09001 * 109.47002 * 299.99574 * 14 13 12 41 41 H 1.09002 * 109.46716 * 60.00091 * 15 13 12 42 42 H 1.08992 * 109.47635 * 180.02562 * 15 13 12 43 43 H 1.09001 * 109.47362 * 300.00732 * 15 13 12 44 44 H 1.09002 * 109.46777 * 299.99578 * 16 13 12 45 45 H 1.09001 * 109.47375 * 60.00133 * 16 13 12 46 46 H 0.96996 * 119.99914 * 179.97438 * 20 19 17 47 47 H 1.09002 * 109.47103 * 300.00247 * 25 2 1 48 48 H 1.09001 * 109.47066 * 60.00169 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5700 -0.7206 1.2497 6 6 4.0805 -1.4416 0.0004 7 6 3.5705 -0.7204 -1.2488 8 1 3.9335 0.3074 -1.2486 9 6 4.0738 -1.4301 -2.4793 10 8 3.2864 -1.8914 -3.2780 11 7 5.3991 -1.5523 -2.6921 12 6 5.8884 -2.2427 -3.8879 13 6 7.4184 -2.2410 -3.8877 14 6 7.9268 -0.7979 -3.8880 15 6 7.9290 -2.9613 -2.6382 16 6 7.9294 -2.9615 -5.1370 17 6 9.4364 -2.9604 -5.1364 18 1 9.9757 -2.4929 -4.3258 19 6 10.1266 -3.5571 -6.1702 20 7 9.4698 -4.1277 -7.1564 21 14 11.9946 -3.5551 -6.1698 22 1 12.4901 -4.2541 -4.9569 23 1 12.4906 -4.2556 -7.3816 24 1 12.4881 -2.1545 -6.1702 25 6 2.0400 -0.7212 -1.2491 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 1.6766 -0.2074 2.1393 30 1 1.6767 -1.7488 1.2493 31 1 3.9333 -1.2348 2.1395 32 1 3.9330 0.3072 1.2498 33 1 3.7176 -2.4693 0.0002 34 1 5.1706 -1.4408 0.0005 35 1 6.0290 -1.1831 -2.0534 36 1 5.5258 -3.2707 -3.8879 37 1 5.5250 -1.7293 -4.7781 38 1 7.5627 -0.2843 -2.9982 39 1 9.0168 -0.7967 -3.8874 40 1 7.5631 -0.2847 -4.7782 41 1 7.5668 -3.9894 -2.6380 42 1 9.0190 -2.9597 -2.6378 43 1 7.5649 -2.4477 -1.7484 44 1 7.5672 -3.9896 -5.1371 45 1 7.5656 -2.4480 -6.0270 46 1 9.9554 -4.5471 -7.8838 47 1 1.6767 -1.7489 -1.2491 48 1 1.6768 -0.2074 -2.1391 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346000025.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:35 Heat of formation + Delta-G solvation = -93.416799 kcal Electronic energy + Delta-G solvation = -22855.069323 eV Core-core repulsion = 19714.610263 eV Total energy + Delta-G solvation = -3140.459060 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.19783 -38.24687 -36.92882 -33.71312 -32.85023 -31.97658 -31.09279 -27.17694 -26.70551 -26.51544 -26.16308 -23.75660 -22.44869 -21.86649 -20.13449 -19.77241 -18.23700 -16.74609 -16.31901 -15.70705 -15.30063 -15.05298 -14.62413 -14.50510 -14.27788 -13.93541 -13.66783 -13.24564 -13.10802 -12.79866 -12.66588 -12.59873 -12.07905 -12.05418 -12.00394 -11.71986 -11.34817 -11.20008 -11.12466 -11.00469 -10.87529 -10.71723 -10.63421 -10.61009 -10.40352 -10.28909 -10.25056 -9.87402 -9.59426 -9.12489 -8.92726 -8.67592 -8.35907 -5.99947 -4.01417 2.86924 3.31650 3.37141 3.37917 3.48204 4.43735 4.44622 4.48561 4.51335 4.88524 4.90608 5.05676 5.13968 5.21800 5.28516 5.35373 5.37820 5.45625 5.49634 5.58437 5.62238 5.63441 5.75054 5.75831 5.78693 5.91938 5.98024 5.99636 6.04168 6.16596 6.17044 6.22986 6.30232 6.30786 6.39807 6.58924 6.62542 6.78980 7.06198 7.07080 7.13110 7.63775 7.76435 7.80082 7.98668 8.40090 8.49585 9.03193 9.61629 11.11505 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.040648 B = 0.003057 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.679040 B = 9156.134764 C = 9531.678723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.093 4.093 3 H 0.069 0.931 4 C -0.116 4.116 5 C -0.117 4.117 6 C -0.111 4.111 7 C -0.107 4.107 8 H 0.093 0.907 9 C 0.510 3.490 10 O -0.547 6.547 11 N -0.721 5.721 12 C 0.127 3.873 13 C -0.072 4.072 14 C -0.127 4.127 15 C -0.126 4.126 16 C 0.036 3.964 17 C -0.512 4.512 18 H 0.059 0.941 19 C 0.056 3.944 20 N -0.895 5.895 21 Si 0.889 3.111 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.278 1.278 25 C -0.093 4.093 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.397 0.603 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.028 0.972 39 H 0.066 0.934 40 H 0.047 0.953 41 H 0.047 0.953 42 H 0.066 0.934 43 H 0.028 0.972 44 H 0.018 0.982 45 H 0.018 0.982 46 H 0.261 0.739 47 H 0.069 0.931 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.825 8.815 17.327 23.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.111 4.111 3 H 0.087 0.913 4 C -0.153 4.153 5 C -0.155 4.155 6 C -0.149 4.149 7 C -0.128 4.128 8 H 0.111 0.889 9 C 0.295 3.705 10 O -0.424 6.424 11 N -0.373 5.373 12 C 0.005 3.995 13 C -0.073 4.073 14 C -0.184 4.184 15 C -0.184 4.184 16 C -0.001 4.001 17 C -0.550 4.550 18 H 0.077 0.923 19 C -0.145 4.145 20 N -0.534 5.534 21 Si 0.717 3.283 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.203 1.203 25 C -0.131 4.131 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.233 0.767 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.047 0.953 39 H 0.085 0.915 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.085 0.915 43 H 0.047 0.953 44 H 0.036 0.964 45 H 0.036 0.964 46 H 0.070 0.930 47 H 0.088 0.912 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -13.355 8.371 16.561 22.863 hybrid contribution 1.444 0.096 0.095 1.451 sum -11.910 8.467 16.656 22.158 Atomic orbital electron populations 1.21813 0.95165 1.01909 1.01523 1.21162 0.95556 0.99550 0.94872 0.91265 1.21625 0.95430 1.00861 0.97414 1.21527 0.95758 1.00760 0.97447 1.21533 1.00543 0.99766 0.93040 1.21358 0.97796 1.00449 0.93192 0.88864 1.20620 0.82546 0.80000 0.87305 1.90684 1.55503 1.48910 1.47326 1.46239 1.06615 1.58344 1.26084 1.21610 0.95123 0.96551 0.86260 1.20898 0.90781 0.96419 0.99181 1.21759 1.02280 0.95199 0.99153 1.21753 1.02263 0.99286 0.95051 1.19085 0.95882 0.95025 0.90131 1.21148 0.91369 1.35836 1.06654 0.92323 1.25014 0.98148 0.95597 0.95725 1.69952 1.35413 1.37376 1.10661 0.86711 0.86133 0.78116 0.77334 1.20332 1.21391 1.20329 1.21394 0.92475 1.01745 0.97437 0.92635 0.92613 0.92843 0.92087 0.91872 0.91671 0.91792 0.91313 0.91415 0.76748 0.91934 0.91943 0.95286 0.91454 0.93391 0.93394 0.91465 0.95285 0.96374 0.96371 0.92972 0.91193 0.91293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.19 37.16 0.34 -0.75 16 2 C -0.09 -0.75 2.72 -90.63 -0.25 -1.00 16 3 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 4 C -0.12 -0.86 5.20 -26.73 -0.14 -1.00 16 5 C -0.12 -0.86 5.92 -26.73 -0.16 -1.02 16 6 C -0.11 -1.01 5.10 -26.73 -0.14 -1.14 16 7 C -0.11 -1.14 2.53 -91.75 -0.23 -1.37 16 8 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 9 C 0.51 7.57 7.15 -10.98 -0.08 7.49 16 10 O -0.55 -10.38 15.98 5.56 0.09 -10.30 16 11 N -0.72 -10.47 4.85 -60.29 -0.29 -10.76 16 12 C 0.13 2.28 4.56 -4.04 -0.02 2.26 16 13 C -0.07 -1.37 0.54 -154.51 -0.08 -1.46 16 14 C -0.13 -2.22 8.05 37.16 0.30 -1.92 16 15 C -0.13 -2.20 8.05 37.16 0.30 -1.90 16 16 C 0.04 0.89 4.04 -27.88 -0.11 0.78 16 17 C -0.51 -13.59 7.65 -34.44 -0.26 -13.85 16 18 H 0.06 1.49 5.68 -52.48 -0.30 1.19 16 19 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 20 N -0.89 -26.50 13.29 55.43 0.74 -25.76 16 21 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 C -0.09 -0.98 3.78 -26.71 -0.10 -1.08 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.58 7.56 -51.93 -0.39 0.18 16 35 H 0.40 4.87 5.58 -40.82 -0.23 4.64 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 39 H 0.07 1.27 6.62 -51.93 -0.34 0.92 16 40 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 43 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 44 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 47 H 0.07 0.83 8.10 -51.93 -0.42 0.41 16 48 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 LS Contribution 365.49 15.07 5.51 5.51 Total: -1.00 -30.40 365.49 -8.77 -39.17 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -9.06 Total: 0.45 kcal Atomic # 6 Polarization: -13.76 SS G_CDS: -0.73 Total: -14.48 kcal Atomic # 7 Polarization: -36.96 SS G_CDS: 0.44 Total: -36.52 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.09 Total: -10.30 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.40 -8.77 -39.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346000025.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.251 kcal (2) G-P(sol) polarization free energy of solvation -30.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds