Wall clock time and date at job start Tue Mar 31 2020 05:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47006 * 2 1 4 4 C 1.52996 * 109.46891 * 119.99770 * 2 1 3 5 5 C 1.53002 * 109.46891 * 180.02562 * 4 2 1 6 6 C 1.52999 * 109.47628 * 300.00009 * 5 4 2 7 7 C 1.53006 * 109.46623 * 60.00059 * 6 5 4 8 8 H 1.09001 * 109.47002 * 180.02562 * 7 6 5 9 9 C 1.50701 * 109.47180 * 60.00084 * 7 6 5 10 10 O 1.21280 * 119.99781 * 239.99561 * 9 7 6 11 11 N 1.34771 * 119.99622 * 60.00237 * 9 7 6 12 12 C 1.46505 * 119.99622 * 179.97438 * 11 9 7 13 13 C 1.52997 * 109.47212 * 179.97438 * 12 11 9 14 14 C 1.53006 * 109.47127 * 300.00138 * 13 12 11 15 15 C 1.52999 * 109.47317 * 59.99649 * 13 12 11 16 16 C 1.52992 * 109.47482 * 179.97438 * 13 12 11 17 17 C 1.50698 * 109.47592 * 179.97438 * 16 13 12 18 18 H 1.08003 * 120.00057 * 0.02562 * 17 16 13 19 19 C 1.37876 * 120.00356 * 179.97438 * 17 16 13 20 20 N 1.31519 * 119.99989 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00117 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46778 * 60.00380 * 21 19 17 23 23 H 1.48503 * 109.47134 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47402 * 300.00322 * 21 19 17 25 25 C 1.52997 * 109.47127 * 299.99936 * 7 6 5 26 26 H 1.09001 * 109.47248 * 179.97438 * 1 2 3 27 27 H 1.08988 * 109.47300 * 300.00338 * 1 2 3 28 28 H 1.09002 * 109.46838 * 60.00503 * 1 2 3 29 29 H 1.09001 * 109.47372 * 300.00036 * 4 2 1 30 30 H 1.08996 * 109.47261 * 60.00575 * 4 2 1 31 31 H 1.09001 * 109.47248 * 60.00689 * 5 4 2 32 32 H 1.09002 * 109.47097 * 180.02562 * 5 4 2 33 33 H 1.08996 * 109.46929 * 300.00775 * 6 5 4 34 34 H 1.08996 * 109.47050 * 179.97438 * 6 5 4 35 35 H 0.96996 * 120.00772 * 359.97438 * 11 9 7 36 36 H 1.09002 * 109.47068 * 299.99729 * 12 11 9 37 37 H 1.09001 * 109.47372 * 59.99816 * 12 11 9 38 38 H 1.08993 * 109.46955 * 60.00011 * 14 13 12 39 39 H 1.09000 * 109.47050 * 179.97438 * 14 13 12 40 40 H 1.09001 * 109.47002 * 299.99574 * 14 13 12 41 41 H 1.09002 * 109.46716 * 60.00091 * 15 13 12 42 42 H 1.09000 * 109.47486 * 180.02562 * 15 13 12 43 43 H 1.09001 * 109.47362 * 300.00732 * 15 13 12 44 44 H 1.09002 * 109.47103 * 300.00247 * 16 13 12 45 45 H 1.09001 * 109.47066 * 60.00169 * 16 13 12 46 46 H 0.96996 * 119.99885 * 179.97438 * 20 19 17 47 47 H 1.09002 * 109.47153 * 180.02562 * 25 7 6 48 48 H 1.09004 * 109.47261 * 300.00303 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5700 -0.7206 1.2496 6 6 4.0806 -1.4415 0.0004 7 6 3.5706 -0.7202 -1.2489 8 1 3.9340 -1.2340 -2.1389 9 6 4.0724 0.7008 -1.2485 10 8 3.2839 1.6223 -1.2486 11 7 5.3973 0.9475 -1.2482 12 6 5.8851 2.3290 -1.2484 13 6 7.4151 2.3296 -1.2474 14 6 7.9246 1.6090 0.0026 15 6 7.9263 1.6080 -2.4959 16 6 7.9246 3.7722 -1.2482 17 6 9.4316 3.7728 -1.2465 18 1 9.9720 2.8377 -1.2454 19 6 10.1205 4.9671 -1.2475 20 7 9.4625 6.1059 -1.2494 21 14 11.9885 4.9678 -1.2447 22 1 12.4855 4.2660 -2.4554 23 1 12.4830 6.3681 -1.2457 24 1 12.4820 4.2700 -0.0304 25 6 2.0406 -0.7209 -1.2492 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8898 28 1 -0.3633 0.5138 -0.8901 29 1 1.6766 -0.2073 2.1392 30 1 1.6767 -1.7488 1.2493 31 1 3.9330 0.3072 1.2499 32 1 3.9333 -1.2348 2.1394 33 1 3.7176 -2.4693 0.0002 34 1 5.1706 -1.4407 0.0005 35 1 6.0280 0.2105 -1.2478 36 1 5.5219 2.8424 -2.1387 37 1 5.5213 2.8429 -0.3587 38 1 7.5617 0.5812 0.0027 39 1 9.0146 1.6090 0.0031 40 1 7.5604 2.1231 0.8921 41 1 7.5634 2.1213 -3.3863 42 1 9.0163 1.6080 -2.4949 43 1 7.5633 0.5802 -2.4958 44 1 7.5616 4.2851 -2.1389 45 1 7.5605 4.2866 -0.3589 46 1 9.9472 6.9460 -1.2497 47 1 1.6773 -0.2074 -2.1395 48 1 1.6777 -1.7487 -1.2495 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346000027.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:37 Heat of formation + Delta-G solvation = -87.302250 kcal Electronic energy + Delta-G solvation = -23367.546242 eV Core-core repulsion = 20227.352329 eV Total energy + Delta-G solvation = -3140.193914 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.49450 -37.96160 -36.67015 -33.80638 -32.72775 -31.88224 -31.02201 -27.16910 -26.59360 -26.51570 -26.14827 -23.65888 -22.45761 -21.79792 -20.53321 -19.50169 -18.02591 -16.43161 -16.30123 -15.87219 -15.37985 -14.98816 -14.60402 -14.39971 -14.12270 -13.83377 -13.48682 -13.25607 -13.05623 -12.76012 -12.47458 -12.32940 -12.13788 -12.02803 -11.97468 -11.85634 -11.51857 -11.16734 -11.03164 -11.00659 -10.87521 -10.64421 -10.55556 -10.40545 -10.27550 -10.19314 -10.10515 -9.87223 -9.44711 -9.09501 -8.92533 -8.63824 -8.36000 -6.00133 -4.01603 2.88848 3.31539 3.37053 3.37898 3.51001 4.44712 4.54154 4.60865 4.63823 4.96222 5.05950 5.13133 5.28419 5.33288 5.35208 5.43012 5.47100 5.54058 5.58917 5.63105 5.73235 5.75939 5.77694 5.82152 5.88698 5.92664 6.11952 6.15107 6.17083 6.21737 6.23351 6.30309 6.31451 6.39778 6.53392 6.62434 6.65518 6.82453 7.06283 7.06945 7.13308 7.63551 7.76222 7.81574 7.98520 8.40074 8.52175 9.03043 9.61493 11.11305 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.034990 B = 0.003410 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.027644 B = 8208.968298 C = 8371.978308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.108 4.108 3 H 0.102 0.898 4 C -0.112 4.112 5 C -0.124 4.124 6 C -0.109 4.109 7 C -0.111 4.111 8 H 0.093 0.907 9 C 0.514 3.486 10 O -0.541 6.541 11 N -0.722 5.722 12 C 0.128 3.872 13 C -0.073 4.073 14 C -0.126 4.126 15 C -0.126 4.126 16 C 0.037 3.963 17 C -0.512 4.512 18 H 0.059 0.941 19 C 0.056 3.944 20 N -0.895 5.895 21 Si 0.889 3.111 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.278 1.278 25 C -0.089 4.089 26 H 0.047 0.953 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.397 0.603 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.028 0.972 39 H 0.066 0.934 40 H 0.047 0.953 41 H 0.047 0.953 42 H 0.066 0.934 43 H 0.028 0.972 44 H 0.018 0.982 45 H 0.018 0.982 46 H 0.261 0.739 47 H 0.066 0.934 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.707 -17.003 2.176 21.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.126 4.126 3 H 0.120 0.880 4 C -0.149 4.149 5 C -0.161 4.161 6 C -0.146 4.146 7 C -0.132 4.132 8 H 0.111 0.889 9 C 0.300 3.700 10 O -0.419 6.419 11 N -0.373 5.373 12 C 0.005 3.995 13 C -0.073 4.073 14 C -0.183 4.183 15 C -0.184 4.184 16 C -0.001 4.001 17 C -0.550 4.550 18 H 0.077 0.923 19 C -0.145 4.145 20 N -0.534 5.534 21 Si 0.717 3.283 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.203 1.203 25 C -0.127 4.127 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.232 0.768 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.047 0.953 39 H 0.085 0.915 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.085 0.915 43 H 0.047 0.953 44 H 0.036 0.964 45 H 0.036 0.964 46 H 0.070 0.930 47 H 0.085 0.915 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -13.237 -16.124 2.174 20.975 hybrid contribution 1.444 -0.208 -0.041 1.459 sum -11.794 -16.333 2.133 20.258 Atomic orbital electron populations 1.21777 0.95772 1.00933 1.01506 1.21428 0.95044 1.02448 0.93729 0.87999 1.21584 0.95159 1.00176 0.98011 1.21569 0.96104 1.01130 0.97330 1.21517 1.00428 0.99227 0.93472 1.21392 0.97985 0.93801 1.00057 0.88930 1.20515 0.82459 0.91105 0.75946 1.90613 1.55027 1.46498 1.49784 1.46244 1.06646 1.09915 1.74510 1.21593 0.95097 0.81125 1.01636 1.20898 0.90835 1.00539 0.95028 1.21750 1.02250 0.97035 0.97289 1.21756 1.02264 0.97034 0.97324 1.19077 0.95875 0.87690 0.97434 1.21149 0.91390 0.92080 1.50413 0.92329 1.25013 0.98138 0.95774 0.95541 1.69956 1.35408 0.97275 1.50764 0.86713 0.86138 0.76941 0.78514 1.20329 1.21390 1.20327 1.21338 0.92288 1.00125 0.98975 0.93395 0.93037 0.92813 0.92289 0.92465 0.91680 0.91868 0.91028 0.91553 0.76812 0.91968 0.91984 0.95278 0.91497 0.93412 0.93403 0.91477 0.95291 0.96397 0.96398 0.92976 0.91491 0.91883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.20 37.16 0.34 -1.06 16 2 C -0.11 -1.22 2.42 -90.62 -0.22 -1.44 16 3 H 0.10 1.49 5.51 -51.93 -0.29 1.21 16 4 C -0.11 -1.11 5.20 -26.73 -0.14 -1.25 16 5 C -0.12 -1.27 5.70 -26.73 -0.15 -1.42 16 6 C -0.11 -0.98 5.36 -26.73 -0.14 -1.13 16 7 C -0.11 -1.17 3.01 -91.77 -0.28 -1.45 16 8 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 9 C 0.51 7.36 5.64 -10.99 -0.06 7.30 16 10 O -0.54 -9.69 13.66 5.56 0.08 -9.62 16 11 N -0.72 -10.25 4.85 -60.29 -0.29 -10.54 16 12 C 0.13 2.26 4.56 -4.04 -0.02 2.24 16 13 C -0.07 -1.37 0.54 -154.51 -0.08 -1.45 16 14 C -0.13 -2.19 8.05 37.16 0.30 -1.89 16 15 C -0.13 -2.20 8.05 37.16 0.30 -1.90 16 16 C 0.04 0.90 4.04 -27.89 -0.11 0.79 16 17 C -0.51 -13.56 7.65 -34.44 -0.26 -13.83 16 18 H 0.06 1.49 5.68 -52.48 -0.30 1.19 16 19 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 20 N -0.89 -26.44 13.29 55.43 0.74 -25.71 16 21 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 C -0.09 -0.94 4.37 -26.73 -0.12 -1.06 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.48 8.14 -51.94 -0.42 0.06 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.82 7.22 -51.93 -0.37 0.45 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.57 7.56 -51.93 -0.39 0.17 16 35 H 0.40 4.81 5.58 -40.82 -0.23 4.59 16 36 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 39 H 0.07 1.25 6.62 -51.93 -0.34 0.91 16 40 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 43 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 44 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 47 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 48 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 358.95 15.07 5.41 5.41 Total: -1.00 -29.78 358.95 -8.71 -38.49 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -8.88 Total: 1.88 kcal Atomic # 6 Polarization: -15.32 SS G_CDS: -0.75 Total: -16.07 kcal Atomic # 7 Polarization: -36.69 SS G_CDS: 0.44 Total: -36.24 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: 0.08 Total: -9.62 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.78 -8.71 -38.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346000027.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.810 kcal (2) G-P(sol) polarization free energy of solvation -29.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds