Wall clock time and date at job start Tue Mar 31 2020 06:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47057 * 2 1 4 4 C 1.50696 * 109.47712 * 239.99735 * 2 1 3 5 5 H 1.07999 * 120.00319 * 240.00495 * 4 2 1 6 6 C 1.37885 * 119.99717 * 59.99878 * 4 2 1 7 7 N 1.31516 * 119.99913 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46506 * 109.47074 * 119.99711 * 2 1 3 13 13 C 1.46502 * 119.99912 * 60.00021 * 12 2 1 14 14 C 1.34775 * 120.00185 * 240.00282 * 12 2 1 15 15 O 1.21286 * 119.99739 * 359.97438 * 14 12 2 16 16 C 1.50697 * 120.00215 * 179.97438 * 14 12 2 17 17 C 1.52996 * 109.47364 * 179.97438 * 16 14 12 18 18 C 1.53002 * 109.47187 * 179.97438 * 17 16 14 19 19 C 1.53000 * 109.47055 * 180.02562 * 18 17 16 20 20 C 1.53003 * 109.47104 * 294.99897 * 19 18 17 21 21 C 1.53000 * 109.47104 * 179.97438 * 20 19 18 22 22 C 1.52995 * 109.46950 * 60.00487 * 21 20 19 23 23 C 1.53006 * 109.47165 * 299.99638 * 22 21 20 24 24 C 1.53000 * 109.46891 * 60.00326 * 23 22 21 25 25 H 1.08998 * 109.46637 * 59.99843 * 1 2 3 26 26 H 1.08997 * 109.46749 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47024 * 300.00143 * 1 2 3 28 28 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 29 29 H 1.09005 * 109.46997 * 89.99685 * 13 12 2 30 30 H 1.08997 * 109.47497 * 210.00034 * 13 12 2 31 31 H 1.09004 * 109.47127 * 330.00532 * 13 12 2 32 32 H 1.08999 * 109.46995 * 300.00028 * 16 14 12 33 33 H 1.09000 * 109.47262 * 59.99668 * 16 14 12 34 34 H 1.08999 * 109.47336 * 300.00124 * 17 16 14 35 35 H 1.08999 * 109.47211 * 60.00263 * 17 16 14 36 36 H 1.08999 * 109.47240 * 300.00374 * 18 17 16 37 37 H 1.08999 * 109.46674 * 60.00126 * 18 17 16 38 38 H 1.08993 * 109.47223 * 55.00166 * 19 18 17 39 39 H 1.09003 * 109.47368 * 300.00317 * 20 19 18 40 40 H 1.09002 * 109.46655 * 60.00167 * 20 19 18 41 41 H 1.08993 * 109.47223 * 300.00269 * 21 20 19 42 42 H 1.09001 * 109.47062 * 180.02562 * 21 20 19 43 43 H 1.09006 * 109.47166 * 179.97438 * 22 21 20 44 44 H 1.08993 * 109.47336 * 59.99851 * 22 21 20 45 45 H 1.09003 * 109.47236 * 300.00221 * 23 22 21 46 46 H 1.08992 * 109.46981 * 180.02562 * 23 22 21 47 47 H 1.09001 * 109.47062 * 180.02562 * 24 23 22 48 48 H 1.08993 * 109.47223 * 60.00023 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2303 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 2.1375 -0.8596 -3.5565 8 14 0.6260 1.2797 -2.6541 9 1 -0.8019 0.8744 -2.6994 10 1 0.8491 2.1773 -1.4922 11 1 0.9774 1.9953 -3.9070 12 7 2.0183 -0.6906 1.1963 13 6 1.6644 -2.0932 1.4281 14 6 2.7931 -0.0356 2.0834 15 8 3.0865 1.1255 1.8912 16 6 3.2950 -0.7457 3.3142 17 6 4.1455 0.2157 4.1467 18 6 4.6545 -0.5052 5.3966 19 6 5.5045 0.4565 6.2293 20 6 6.7602 0.8389 5.4431 21 6 7.6099 1.8010 6.2756 22 6 8.0154 1.1211 7.5848 23 6 6.7598 0.7387 8.3711 24 6 5.9101 -0.2235 7.5386 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.9028 -0.5285 -4.4375 29 1 2.4157 -2.7377 0.9718 30 1 1.6237 -2.2852 2.5003 31 1 0.6904 -2.3002 0.9847 32 1 2.4470 -1.0879 3.9074 33 1 3.9003 -1.6024 3.0180 34 1 4.9935 0.5575 3.5533 35 1 3.5405 1.0726 4.4430 36 1 3.8063 -0.8466 5.9898 37 1 5.2594 -1.3622 5.1006 38 1 4.9268 1.3539 6.4502 39 1 7.3380 -0.0586 5.2222 40 1 6.4713 1.3237 4.5106 41 1 7.0319 2.6984 6.4961 42 1 8.5042 2.0738 5.7153 43 1 8.6212 1.8064 8.1777 44 1 8.5934 0.2237 7.3643 45 1 6.1818 1.6361 8.5916 46 1 7.0487 0.2547 9.3040 47 1 5.0153 -0.4956 8.0986 48 1 6.4880 -1.1209 7.3181 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349322813.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:11 Heat of formation + Delta-G solvation = -75.050380 kcal Electronic energy + Delta-G solvation = -22529.548008 eV Core-core repulsion = 19389.885375 eV Total energy + Delta-G solvation = -3139.662633 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 2.44 seconds Orbital eigenvalues (eV) -39.38989 -38.82158 -35.65291 -34.57488 -32.77380 -31.31645 -30.89821 -30.07960 -26.61502 -26.15547 -25.07631 -23.25825 -22.49378 -21.01917 -20.35626 -19.86516 -18.19083 -16.93856 -16.07270 -15.74751 -15.69619 -15.31440 -14.75373 -14.41522 -14.25589 -13.99726 -13.72039 -13.05514 -12.97872 -12.94844 -12.49494 -12.37510 -12.23058 -12.14986 -11.90431 -11.84375 -11.54421 -11.37630 -11.25654 -11.22010 -11.07919 -10.96687 -10.67050 -10.56722 -10.52185 -10.15225 -10.10694 -9.98785 -9.63864 -9.31941 -8.94103 -8.62515 -7.68192 -6.13634 -4.13887 3.23814 3.35059 3.37474 3.40670 3.85967 4.36233 4.48492 4.53994 4.60002 4.91477 4.98566 5.07853 5.14504 5.20081 5.22829 5.34674 5.35057 5.37169 5.46250 5.50997 5.54469 5.70286 5.76086 5.80204 5.84370 5.85569 5.90351 5.97442 5.99988 6.04071 6.09936 6.13533 6.21097 6.22827 6.27955 6.31558 6.34561 6.43946 6.50798 6.54054 6.85895 7.15319 7.38971 7.65490 8.23178 8.50881 8.86933 8.97758 9.47865 10.99262 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.031858 B = 0.003013 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.684560 B = 9291.348254 C = 9581.065376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.228 3.772 3 H 0.062 0.938 4 C -0.526 4.526 5 H 0.078 0.922 6 C 0.074 3.926 7 N -0.896 5.896 8 Si 0.884 3.116 9 H -0.277 1.277 10 H -0.263 1.263 11 H -0.294 1.294 12 N -0.591 5.591 13 C 0.088 3.912 14 C 0.503 3.497 15 O -0.556 6.556 16 C -0.138 4.138 17 C -0.104 4.104 18 C -0.114 4.114 19 C -0.086 4.086 20 C -0.118 4.118 21 C -0.121 4.121 22 C -0.119 4.119 23 C -0.120 4.120 24 C -0.114 4.114 25 H 0.050 0.950 26 H 0.055 0.945 27 H 0.032 0.968 28 H 0.265 0.735 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.069 0.931 39 H 0.060 0.940 40 H 0.069 0.931 41 H 0.060 0.940 42 H 0.059 0.941 43 H 0.057 0.943 44 H 0.060 0.940 45 H 0.060 0.940 46 H 0.057 0.943 47 H 0.059 0.941 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.783 -0.638 22.258 23.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.126 3.874 3 H 0.080 0.920 4 C -0.564 4.564 5 H 0.096 0.904 6 C -0.128 4.128 7 N -0.534 5.534 8 Si 0.714 3.286 9 H -0.204 1.204 10 H -0.188 1.188 11 H -0.222 1.222 12 N -0.322 5.322 13 C -0.056 4.056 14 C 0.291 3.709 15 O -0.435 6.435 16 C -0.178 4.178 17 C -0.142 4.142 18 C -0.152 4.152 19 C -0.105 4.105 20 C -0.156 4.156 21 C -0.158 4.158 22 C -0.157 4.157 23 C -0.157 4.157 24 C -0.152 4.152 25 H 0.068 0.932 26 H 0.074 0.926 27 H 0.051 0.949 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.079 0.921 40 H 0.087 0.913 41 H 0.079 0.921 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.078 0.922 45 H 0.079 0.921 46 H 0.076 0.924 47 H 0.078 0.922 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.928 -0.044 21.933 22.720 hybrid contribution -0.676 0.520 -0.399 0.942 sum 5.251 0.476 21.534 22.170 Atomic orbital electron populations 1.22455 0.99242 1.00990 0.99212 1.19268 0.89878 0.95234 0.83035 0.92038 1.21176 1.32576 1.14160 0.88532 0.90418 1.24878 0.95710 0.96593 0.95639 1.69880 1.45317 1.40241 0.97955 0.86908 0.80387 0.83882 0.77463 1.20426 1.18802 1.22154 1.47899 1.49473 1.11819 1.22970 1.21582 1.01730 0.82837 0.99470 1.20555 0.78720 0.87114 0.84517 1.90632 1.58301 1.17390 1.77183 1.21692 1.00772 0.99934 0.95395 1.21379 0.99775 0.97805 0.95226 1.21660 0.99065 0.98240 0.96232 1.21156 0.96163 0.98607 0.94542 1.21659 0.95897 0.99362 0.98652 1.21540 0.99656 0.98593 0.96025 1.21537 0.97329 1.00342 0.96484 1.21531 0.96653 0.99498 0.98031 1.21590 0.99372 0.98336 0.95863 0.93197 0.92570 0.94856 0.92467 0.92893 0.92651 0.90962 0.89700 0.89467 0.91002 0.91527 0.92139 0.92016 0.91253 0.92094 0.91253 0.92112 0.92198 0.92445 0.92161 0.92140 0.92376 0.92199 0.92084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.52 8.65 37.16 0.32 -3.20 16 2 C 0.23 5.60 2.23 -69.08 -0.15 5.44 16 3 H 0.06 1.69 5.96 -51.93 -0.31 1.38 16 4 C -0.53 -14.77 8.95 -34.44 -0.31 -15.08 16 5 H 0.08 2.34 7.89 -52.49 -0.41 1.93 16 6 C 0.07 2.15 5.45 -17.82 -0.10 2.05 16 7 N -0.90 -27.27 13.96 55.43 0.77 -26.49 16 8 Si 0.88 22.15 24.37 -169.99 -4.14 18.00 16 9 H -0.28 -6.63 6.87 56.52 0.39 -6.24 16 10 H -0.26 -6.54 6.53 56.52 0.37 -6.17 16 11 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 12 N -0.59 -12.26 2.75 -175.25 -0.48 -12.75 16 13 C 0.09 1.43 9.48 59.85 0.57 1.99 16 14 C 0.50 10.04 7.67 -10.99 -0.08 9.96 16 15 O -0.56 -13.25 15.31 5.55 0.09 -13.17 16 16 C -0.14 -1.93 4.25 -27.89 -0.12 -2.04 16 17 C -0.10 -1.35 4.26 -26.73 -0.11 -1.47 16 18 C -0.11 -1.13 4.68 -26.73 -0.13 -1.26 16 19 C -0.09 -0.81 2.19 -90.62 -0.20 -1.01 16 20 C -0.12 -1.16 4.96 -26.73 -0.13 -1.29 16 21 C -0.12 -1.06 5.92 -26.73 -0.16 -1.22 16 22 C -0.12 -0.93 5.92 -26.73 -0.16 -1.09 16 23 C -0.12 -0.91 5.92 -26.73 -0.16 -1.07 16 24 C -0.11 -0.92 5.21 -26.73 -0.14 -1.06 16 25 H 0.05 1.14 3.27 -51.93 -0.17 0.97 16 26 H 0.06 1.13 6.66 -51.93 -0.35 0.79 16 27 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 29 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.05 0.68 6.44 -51.93 -0.33 0.35 16 31 H 0.07 1.17 6.43 -51.93 -0.33 0.84 16 32 H 0.08 0.99 7.40 -51.93 -0.38 0.61 16 33 H 0.09 1.11 8.11 -51.93 -0.42 0.69 16 34 H 0.07 1.04 6.52 -51.93 -0.34 0.71 16 35 H 0.07 0.94 8.10 -51.93 -0.42 0.52 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.77 6.57 -51.93 -0.34 0.43 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 46 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 358.29 15.07 5.40 5.40 Total: -1.00 -32.19 358.29 -8.34 -40.52 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -8.91 Total: -1.19 kcal Atomic # 6 Polarization: -9.27 SS G_CDS: -1.06 Total: -10.33 kcal Atomic # 7 Polarization: -39.53 SS G_CDS: 0.29 Total: -39.24 kcal Atomic # 8 Polarization: -13.25 SS G_CDS: 0.09 Total: -13.17 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.14 Total: 18.00 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.19 -8.34 -40.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349322813.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.528 kcal (2) G-P(sol) polarization free energy of solvation -32.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.45 seconds