Wall clock time and date at job start Tue Mar 31 2020 06:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46958 * 2 1 4 4 C 1.50705 * 109.46944 * 240.00627 * 2 1 3 5 5 H 1.07998 * 119.99701 * 240.00253 * 4 2 1 6 6 C 1.37868 * 120.00265 * 59.99659 * 4 2 1 7 7 N 1.31523 * 120.00057 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00201 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47231 * 90.00214 * 8 6 4 10 10 H 1.48499 * 109.47099 * 210.00180 * 8 6 4 11 11 H 1.48496 * 109.47073 * 330.00386 * 8 6 4 12 12 N 1.46497 * 109.47357 * 120.00690 * 2 1 3 13 13 C 1.34780 * 119.99566 * 275.00168 * 12 2 1 14 14 O 1.21280 * 120.00423 * 359.97438 * 13 12 2 15 15 C 1.50701 * 119.99795 * 180.02562 * 13 12 2 16 16 C 1.52997 * 109.47212 * 179.97438 * 15 13 12 17 17 C 1.53006 * 109.47127 * 300.00129 * 16 15 13 18 18 C 1.52999 * 109.47317 * 59.99639 * 16 15 13 19 19 C 1.52992 * 109.47482 * 179.97438 * 16 15 13 20 20 C 1.52996 * 109.47224 * 300.00294 * 19 16 15 21 21 C 1.53008 * 109.47409 * 179.97438 * 20 19 16 22 22 C 1.52997 * 109.47280 * 59.99717 * 21 20 19 23 23 C 1.53006 * 109.47127 * 300.00450 * 22 21 20 24 24 C 1.52997 * 109.47482 * 179.97438 * 19 16 15 25 25 H 1.08993 * 109.47354 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46920 * 299.99358 * 1 2 3 27 27 H 1.09004 * 109.47178 * 59.99589 * 1 2 3 28 28 H 0.96994 * 120.00169 * 179.97438 * 7 6 4 29 29 H 0.96995 * 120.00423 * 94.99474 * 12 2 1 30 30 H 1.09002 * 109.47060 * 299.99722 * 15 13 12 31 31 H 1.09001 * 109.47380 * 59.99809 * 15 13 12 32 32 H 1.08993 * 109.46955 * 60.00011 * 17 16 15 33 33 H 1.09000 * 109.47050 * 179.97438 * 17 16 15 34 34 H 1.09001 * 109.47002 * 299.99574 * 17 16 15 35 35 H 1.09002 * 109.46716 * 60.00091 * 18 16 15 36 36 H 1.09000 * 109.47486 * 180.02562 * 18 16 15 37 37 H 1.09001 * 109.47362 * 300.00732 * 18 16 15 38 38 H 1.09001 * 109.47066 * 60.00169 * 19 16 15 39 39 H 1.09001 * 109.46993 * 299.99360 * 20 19 16 40 40 H 1.09004 * 109.47552 * 59.99646 * 20 19 16 41 41 H 1.09001 * 109.46630 * 299.99716 * 21 20 19 42 42 H 1.09002 * 109.47288 * 179.97438 * 21 20 19 43 43 H 1.08988 * 109.47545 * 180.02562 * 22 21 20 44 44 H 1.08998 * 109.47076 * 59.99674 * 22 21 20 45 45 H 1.09001 * 109.46998 * 300.00132 * 23 22 21 46 46 H 1.09000 * 109.47050 * 179.97438 * 23 22 21 47 47 H 1.09002 * 109.47153 * 300.00216 * 24 19 16 48 48 H 1.09001 * 109.47289 * 60.00300 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6532 -1.5884 -1.1316 6 6 1.6992 -0.2392 -2.4827 7 7 0.9434 0.8304 -2.6034 8 14 2.3224 -1.1192 -4.0081 9 1 1.3447 -2.1613 -4.4126 10 1 2.4871 -0.1398 -5.1120 11 1 3.6307 -1.7563 -3.7121 12 7 2.0184 -0.6907 1.1960 13 6 2.1471 -0.0184 2.3571 14 8 1.8590 1.1584 2.4116 15 6 2.6500 -0.7288 3.5873 16 6 2.7019 0.2543 4.7585 17 6 3.6457 1.4083 4.4142 18 6 1.2995 0.8048 5.0249 19 6 3.2119 -0.4669 6.0077 20 6 2.2677 -1.6206 6.3517 21 6 2.7780 -2.3423 7.6006 22 6 2.8304 -1.3595 8.7720 23 6 3.7747 -0.2058 8.4280 24 6 3.2644 0.5163 7.1787 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5139 -0.8900 28 1 0.7094 1.1620 -3.4843 29 1 2.2490 -1.6318 1.1524 30 1 1.9778 -1.5511 3.8324 31 1 3.6493 -1.1205 3.3977 32 1 3.2820 1.9221 3.5245 33 1 3.6824 2.1090 5.2484 34 1 4.6449 1.0162 4.2245 35 1 0.6271 -0.0173 5.2702 36 1 1.3365 1.5055 5.8590 37 1 0.9357 1.3185 4.1351 38 1 4.2110 -0.8593 5.8182 39 1 1.2686 -1.2281 6.5413 40 1 2.2307 -2.3210 5.5173 41 1 3.7770 -2.7348 7.4106 42 1 2.1051 -3.1639 7.8459 43 1 3.1944 -1.8735 9.6615 44 1 1.8315 -0.9670 8.9619 45 1 4.7737 -0.5983 8.2380 46 1 3.8116 0.4946 9.2623 47 1 3.9374 1.3379 6.9333 48 1 2.2655 0.9092 7.3684 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355382676.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:29 Heat of formation + Delta-G solvation = -79.808580 kcal Electronic energy + Delta-G solvation = -23383.659965 eV Core-core repulsion = 20243.791001 eV Total energy + Delta-G solvation = -3139.868964 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.14509 -38.44063 -35.56414 -34.40928 -32.36144 -31.01587 -29.82785 -29.03882 -27.11891 -26.96979 -25.22582 -23.22016 -22.48624 -21.17179 -19.99998 -19.30384 -18.27463 -16.96145 -16.04281 -15.26926 -15.11142 -14.79195 -14.47623 -14.29137 -14.21679 -14.08030 -13.64465 -13.27109 -13.01376 -12.43533 -12.40618 -12.22515 -12.02676 -11.73686 -11.58240 -11.43857 -11.19987 -11.13882 -11.05089 -10.95233 -10.83063 -10.74266 -10.56690 -10.46504 -10.25879 -10.21464 -10.12338 -9.95353 -9.80231 -9.01471 -8.65623 -8.49493 -7.81071 -6.10771 -4.19878 3.24709 3.31606 3.33834 3.49946 4.15657 4.39725 4.61070 4.63209 4.71097 5.00102 5.04828 5.21018 5.23084 5.30082 5.35988 5.42393 5.44374 5.52875 5.58564 5.61520 5.81137 5.83326 5.88557 5.91401 5.94994 6.02791 6.08508 6.11644 6.14213 6.18765 6.23641 6.33739 6.35654 6.47248 6.55943 6.84142 6.87184 6.90468 7.02999 7.18822 7.53851 7.62025 7.72936 7.95356 8.18245 8.74041 8.82307 9.23354 9.48516 10.95121 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.035892 B = 0.003376 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.931905 B = 8291.398014 C = 8490.884796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.265 3.735 3 H 0.048 0.952 4 C -0.533 4.533 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.901 3.099 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.713 5.713 13 C 0.502 3.498 14 O -0.547 6.547 15 C -0.136 4.136 16 C -0.035 4.035 17 C -0.154 4.154 18 C -0.155 4.155 19 C -0.075 4.075 20 C -0.120 4.120 21 C -0.119 4.119 22 C -0.119 4.119 23 C -0.119 4.119 24 C -0.117 4.117 25 H 0.024 0.976 26 H 0.014 0.986 27 H 0.089 0.911 28 H 0.264 0.736 29 H 0.387 0.613 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.048 0.952 34 H 0.041 0.959 35 H 0.044 0.956 36 H 0.047 0.953 37 H 0.087 0.913 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.063 0.937 41 H 0.059 0.941 42 H 0.057 0.943 43 H 0.055 0.945 44 H 0.060 0.940 45 H 0.058 0.942 46 H 0.057 0.943 47 H 0.064 0.936 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.026 -4.904 19.494 20.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.163 3.837 3 H 0.066 0.934 4 C -0.572 4.572 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.728 3.272 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.360 5.360 13 C 0.287 3.713 14 O -0.428 6.428 15 C -0.177 4.177 16 C -0.036 4.036 17 C -0.211 4.211 18 C -0.212 4.212 19 C -0.094 4.094 20 C -0.157 4.157 21 C -0.157 4.157 22 C -0.156 4.156 23 C -0.157 4.157 24 C -0.154 4.154 25 H 0.044 0.956 26 H 0.033 0.967 27 H 0.107 0.893 28 H 0.074 0.926 29 H 0.219 0.781 30 H 0.104 0.896 31 H 0.101 0.899 32 H 0.107 0.893 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.106 0.894 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.074 0.926 44 H 0.078 0.922 45 H 0.077 0.923 46 H 0.075 0.925 47 H 0.083 0.917 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.729 -3.932 19.348 20.093 hybrid contribution 0.439 -1.078 -0.895 1.468 sum 4.168 -5.009 18.453 19.570 Atomic orbital electron populations 1.22067 0.98621 0.98972 1.00806 1.18693 0.90895 0.93948 0.80193 0.93447 1.21244 1.32327 1.13149 0.90457 0.92172 1.24890 0.94858 0.94949 0.99045 1.69906 1.35998 1.22426 1.23817 0.86464 0.79169 0.79280 0.82279 1.20573 1.21079 1.19871 1.46571 1.65192 1.13475 1.10748 1.20460 0.78471 0.87606 0.84732 1.90507 1.51321 1.16170 1.84753 1.21843 1.02390 0.99324 0.94103 1.20180 0.96629 0.94588 0.92193 1.22151 0.97797 0.97910 1.03254 1.22189 0.95318 1.00530 1.03114 1.21183 0.98859 0.95118 0.94210 1.21729 0.99544 0.97262 0.97199 1.21538 1.01096 0.97705 0.95318 1.21527 0.99846 0.96603 0.97661 1.21555 0.99002 0.97317 0.97810 1.21694 1.01651 0.97956 0.94081 0.95633 0.96677 0.89282 0.92622 0.78125 0.89618 0.89884 0.89292 0.93323 0.93972 0.93668 0.93380 0.89447 0.91596 0.91555 0.91801 0.92255 0.92396 0.92588 0.92171 0.92291 0.92465 0.91735 0.91644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.66 9.26 37.16 0.34 -3.31 16 2 C 0.26 6.74 2.56 -69.08 -0.18 6.56 16 3 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 4 C -0.53 -14.22 8.73 -34.44 -0.30 -14.52 16 5 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -25.05 11.32 55.43 0.63 -24.43 16 8 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 9 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 12 N -0.71 -14.73 5.07 -54.93 -0.28 -15.01 16 13 C 0.50 9.63 7.21 -10.98 -0.08 9.55 16 14 O -0.55 -12.21 11.01 5.56 0.06 -12.15 16 15 C -0.14 -1.92 4.42 -27.88 -0.12 -2.05 16 16 C -0.04 -0.47 0.32 -154.51 -0.05 -0.52 16 17 C -0.15 -2.22 7.82 37.16 0.29 -1.92 16 18 C -0.15 -2.18 7.47 37.16 0.28 -1.91 16 19 C -0.08 -0.80 1.55 -90.63 -0.14 -0.94 16 20 C -0.12 -1.18 4.50 -26.73 -0.12 -1.30 16 21 C -0.12 -1.03 5.92 -26.73 -0.16 -1.18 16 22 C -0.12 -0.98 5.92 -26.73 -0.16 -1.14 16 23 C -0.12 -1.02 5.92 -26.70 -0.16 -1.18 16 24 C -0.12 -1.16 4.50 -26.70 -0.12 -1.28 16 25 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.09 2.42 6.07 -51.93 -0.32 2.11 16 28 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 29 H 0.39 6.99 8.54 -40.82 -0.35 6.64 16 30 H 0.09 1.08 6.43 -51.93 -0.33 0.74 16 31 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.09 1.59 5.51 -51.93 -0.29 1.30 16 33 H 0.05 0.63 6.43 -51.93 -0.33 0.29 16 34 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.04 0.59 6.43 -51.93 -0.33 0.26 16 36 H 0.05 0.62 6.43 -51.93 -0.33 0.28 16 37 H 0.09 1.54 5.51 -51.93 -0.29 1.25 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.69 6.43 -51.93 -0.33 0.35 16 40 H 0.06 0.63 6.43 -51.93 -0.33 0.30 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.41 8.14 -51.94 -0.42 -0.01 16 44 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.06 0.66 6.43 -51.93 -0.33 0.32 16 48 H 0.06 0.68 6.43 -51.93 -0.33 0.34 16 LS Contribution 349.91 15.07 5.27 5.27 Total: -1.00 -28.83 349.91 -8.60 -37.42 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -8.49 Total: 6.63 kcal Atomic # 6 Polarization: -12.69 SS G_CDS: -0.77 Total: -13.46 kcal Atomic # 7 Polarization: -39.79 SS G_CDS: 0.35 Total: -39.44 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: 0.06 Total: -12.15 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -28.83 -8.60 -37.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355382676.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.386 kcal (2) G-P(sol) polarization free energy of solvation -28.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds