Wall clock time and date at job start Tue Mar 31 2020 06:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47363 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47233 * 120.00158 * 8 6 4 11 11 H 1.48508 * 109.46883 * 239.99963 * 8 6 4 12 12 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 13 13 C 1.34784 * 120.00075 * 85.00024 * 12 2 1 14 14 O 1.21280 * 119.99396 * 0.02562 * 13 12 2 15 15 C 1.50699 * 120.00292 * 180.02562 * 13 12 2 16 16 C 1.52998 * 109.47052 * 180.02562 * 15 13 12 17 17 C 1.53000 * 109.47150 * 300.00080 * 16 15 13 18 18 C 1.53005 * 109.47376 * 60.00023 * 16 15 13 19 19 C 1.52993 * 109.47327 * 179.97438 * 16 15 13 20 20 C 1.53000 * 109.47095 * 300.00143 * 19 16 15 21 21 C 1.53002 * 109.47199 * 179.97438 * 20 19 16 22 22 C 1.52998 * 109.47208 * 59.99866 * 21 20 19 23 23 C 1.53006 * 109.46921 * 299.99938 * 22 21 20 24 24 C 1.52993 * 109.46807 * 60.00255 * 23 22 21 25 25 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 26 26 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 27 27 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 28 28 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 29 29 H 0.96996 * 120.00792 * 265.00493 * 12 2 1 30 30 H 1.08994 * 109.47030 * 299.99967 * 15 13 12 31 31 H 1.08993 * 109.47006 * 59.99994 * 15 13 12 32 32 H 1.09001 * 109.46979 * 60.00111 * 17 16 15 33 33 H 1.09002 * 109.47125 * 180.02562 * 17 16 15 34 34 H 1.09002 * 109.47133 * 300.00316 * 17 16 15 35 35 H 1.09000 * 109.47088 * 59.99427 * 18 16 15 36 36 H 1.08993 * 109.47545 * 179.97438 * 18 16 15 37 37 H 1.09001 * 109.46681 * 300.00112 * 18 16 15 38 38 H 1.09006 * 109.47125 * 59.99669 * 19 16 15 39 39 H 1.09002 * 109.47133 * 299.99432 * 20 19 16 40 40 H 1.09002 * 109.47125 * 59.99707 * 20 19 16 41 41 H 1.09006 * 109.47140 * 299.99598 * 21 20 19 42 42 H 1.08999 * 109.47437 * 179.97438 * 21 20 19 43 43 H 1.09001 * 109.47089 * 180.02562 * 22 21 20 44 44 H 1.08993 * 109.47315 * 60.00150 * 22 21 20 45 45 H 1.08996 * 109.46914 * 299.99897 * 23 22 21 46 46 H 1.09002 * 109.46896 * 180.02562 * 23 22 21 47 47 H 1.09005 * 109.46810 * 179.97438 * 24 23 22 48 48 H 1.09006 * 109.47498 * 60.00056 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.1474 -2.2863 3.6038 10 1 3.1473 -0.1857 4.8160 11 1 1.1678 -1.5865 4.8165 12 7 2.0183 -0.6907 -1.1961 13 6 2.1471 -0.0184 -2.3572 14 8 1.8590 1.1585 -2.4115 15 6 2.6488 -0.7290 -3.5877 16 6 2.7010 0.2543 -4.7588 17 6 1.2989 0.8059 -5.0245 18 6 3.6459 1.4075 -4.4148 19 6 3.2111 -0.4669 -6.0080 20 6 4.6133 -1.0180 -5.7419 21 6 5.1232 -1.7397 -6.9909 22 6 5.1752 -0.7569 -8.1623 23 6 3.7729 -0.2059 -8.4284 24 6 3.2632 0.5159 -7.1794 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 0.7082 1.1609 3.4844 29 1 2.2490 -1.6318 -1.1526 30 1 3.6479 -1.1215 -3.3986 31 1 1.9760 -1.5507 -3.8325 32 1 0.9359 1.3199 -4.1344 33 1 1.3359 1.5061 -5.8590 34 1 0.6256 -0.0156 -5.2695 35 1 4.6449 1.0146 -4.2254 36 1 3.6835 2.1077 -5.2492 37 1 3.2830 1.9214 -3.5247 38 1 2.5382 -1.2887 -6.2532 39 1 5.2862 -0.1962 -5.4967 40 1 4.5762 -1.7185 -4.9076 41 1 4.4503 -2.5616 -7.2357 42 1 6.1224 -2.1320 -6.8015 43 1 5.5380 -1.2713 -9.0523 44 1 5.8481 0.0648 -7.9176 45 1 3.1000 -1.0277 -8.6732 46 1 3.8099 0.4939 -9.2633 47 1 2.2643 0.9088 -7.3692 48 1 3.9361 1.3377 -6.9346 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355382679.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:36 Heat of formation + Delta-G solvation = -79.842889 kcal Electronic energy + Delta-G solvation = -23383.030905 eV Core-core repulsion = 20243.160454 eV Total energy + Delta-G solvation = -3139.870452 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 2.98 seconds Orbital eigenvalues (eV) -40.14474 -38.44105 -35.56415 -34.40955 -32.36226 -31.01579 -29.82513 -29.04065 -27.12041 -26.96690 -25.22733 -23.21971 -22.48225 -21.17449 -19.99537 -19.30416 -18.27342 -16.96097 -16.05876 -15.20591 -15.14502 -14.78669 -14.51996 -14.29172 -14.20287 -14.09078 -13.56911 -13.35390 -12.94285 -12.41950 -12.40273 -12.33146 -12.00293 -11.68554 -11.58165 -11.46364 -11.20146 -11.12169 -11.05902 -10.95401 -10.86457 -10.68218 -10.58077 -10.48366 -10.24133 -10.21885 -10.12368 -9.94845 -9.80022 -9.01023 -8.65777 -8.49614 -7.81086 -6.11031 -4.19979 3.23955 3.31775 3.34482 3.49926 4.15630 4.39656 4.61308 4.63401 4.71353 5.00211 5.05043 5.20933 5.23142 5.30450 5.36065 5.42570 5.44751 5.53168 5.58745 5.61708 5.81164 5.83267 5.89047 5.91182 5.95077 6.02955 6.08774 6.11941 6.14463 6.19052 6.24012 6.33293 6.36041 6.47494 6.56077 6.83680 6.86817 6.91191 7.02927 7.18866 7.53861 7.62139 7.72926 7.95323 8.18150 8.74102 8.82354 9.23353 9.48456 10.94899 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.033150 B = 0.003471 C = 0.003277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.434251 B = 8064.304186 C = 8542.879621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.264 3.736 3 H 0.048 0.952 4 C -0.533 4.533 5 H 0.061 0.939 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.900 3.100 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.713 5.713 13 C 0.502 3.498 14 O -0.547 6.547 15 C -0.136 4.136 16 C -0.035 4.035 17 C -0.154 4.154 18 C -0.155 4.155 19 C -0.075 4.075 20 C -0.120 4.120 21 C -0.119 4.119 22 C -0.119 4.119 23 C -0.119 4.119 24 C -0.117 4.117 25 H 0.014 0.986 26 H 0.089 0.911 27 H 0.025 0.975 28 H 0.263 0.737 29 H 0.387 0.613 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.048 0.952 34 H 0.041 0.959 35 H 0.045 0.955 36 H 0.047 0.953 37 H 0.087 0.913 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.059 0.941 42 H 0.057 0.943 43 H 0.055 0.945 44 H 0.060 0.940 45 H 0.058 0.942 46 H 0.057 0.943 47 H 0.064 0.936 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.818 -4.451 -19.039 20.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.162 3.838 3 H 0.066 0.934 4 C -0.571 4.571 5 H 0.079 0.921 6 C -0.138 4.138 7 N -0.521 5.521 8 Si 0.728 3.272 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.360 5.360 13 C 0.287 3.713 14 O -0.428 6.428 15 C -0.177 4.177 16 C -0.036 4.036 17 C -0.211 4.211 18 C -0.212 4.212 19 C -0.093 4.093 20 C -0.158 4.158 21 C -0.157 4.157 22 C -0.156 4.156 23 C -0.157 4.157 24 C -0.154 4.154 25 H 0.033 0.967 26 H 0.107 0.893 27 H 0.044 0.956 28 H 0.073 0.927 29 H 0.219 0.781 30 H 0.104 0.896 31 H 0.101 0.899 32 H 0.107 0.893 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.106 0.894 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.074 0.926 44 H 0.078 0.922 45 H 0.077 0.923 46 H 0.075 0.925 47 H 0.082 0.918 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.519 -3.485 -18.895 19.991 hybrid contribution 0.403 -1.072 0.889 1.450 sum 5.923 -4.558 -18.006 19.495 Atomic orbital electron populations 1.22068 0.98621 0.98978 1.00810 1.18697 0.90901 0.93953 0.80208 0.93447 1.21284 1.32249 1.13135 0.90437 0.92114 1.24894 0.94851 0.94964 0.99059 1.69914 1.35982 1.22530 1.23703 0.86414 0.78607 0.79541 0.82649 1.19751 1.20885 1.20901 1.46574 1.65191 1.13470 1.10756 1.20461 0.78452 0.87614 0.84745 1.90507 1.51289 1.16183 1.84772 1.21840 1.02438 0.99214 0.94164 1.20180 0.96421 0.94702 0.92288 1.22149 0.95207 1.00516 1.03211 1.22190 0.97993 0.97835 1.03155 1.21182 0.96271 0.97463 0.94431 1.21731 0.96733 1.00068 0.97229 1.21537 1.00710 0.98049 0.95356 1.21530 0.97206 0.98959 0.97952 1.21542 0.96571 0.99803 0.97755 1.21682 1.01339 0.98251 0.94107 0.96678 0.89275 0.95626 0.92679 0.78124 0.89556 0.89946 0.89309 0.93315 0.94031 0.93625 0.93389 0.89422 0.91624 0.91524 0.91782 0.92270 0.92385 0.92593 0.92158 0.92308 0.92467 0.91760 0.91632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.66 9.26 37.16 0.34 -3.32 16 2 C 0.26 6.73 2.56 -69.08 -0.18 6.55 16 3 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 4 C -0.53 -14.19 8.73 -34.44 -0.30 -14.49 16 5 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.88 -25.03 11.32 55.43 0.63 -24.41 16 8 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16 9 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 N -0.71 -14.73 5.07 -54.93 -0.28 -15.01 16 13 C 0.50 9.63 7.21 -10.98 -0.08 9.55 16 14 O -0.55 -12.20 11.01 5.56 0.06 -12.14 16 15 C -0.14 -1.92 4.42 -27.88 -0.12 -2.05 16 16 C -0.04 -0.47 0.32 -154.51 -0.05 -0.52 16 17 C -0.15 -2.19 7.83 37.16 0.29 -1.90 16 18 C -0.15 -2.21 7.47 37.16 0.28 -1.93 16 19 C -0.07 -0.80 1.55 -90.62 -0.14 -0.94 16 20 C -0.12 -1.20 4.50 -26.73 -0.12 -1.32 16 21 C -0.12 -1.03 5.92 -26.73 -0.16 -1.19 16 22 C -0.12 -0.99 5.92 -26.73 -0.16 -1.15 16 23 C -0.12 -1.02 5.92 -26.73 -0.16 -1.18 16 24 C -0.12 -1.16 4.50 -26.74 -0.12 -1.28 16 25 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 27 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.39 6.99 8.54 -40.82 -0.35 6.64 16 30 H 0.09 1.10 6.43 -51.93 -0.33 0.77 16 31 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.09 1.57 5.51 -51.93 -0.29 1.28 16 33 H 0.05 0.62 6.43 -51.93 -0.33 0.29 16 34 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.04 0.61 6.43 -51.93 -0.33 0.27 16 36 H 0.05 0.62 6.43 -51.93 -0.33 0.29 16 37 H 0.09 1.56 5.51 -51.93 -0.29 1.27 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.70 6.43 -51.93 -0.33 0.37 16 40 H 0.06 0.64 6.43 -51.93 -0.33 0.31 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 44 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.06 0.65 6.43 -51.93 -0.33 0.32 16 48 H 0.07 0.68 6.43 -51.93 -0.33 0.35 16 LS Contribution 349.91 15.07 5.27 5.27 Total: -1.00 -28.82 349.91 -8.60 -37.42 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -8.49 Total: 6.64 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: -0.77 Total: -13.48 kcal Atomic # 7 Polarization: -39.76 SS G_CDS: 0.35 Total: -39.41 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: 0.06 Total: -12.14 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -28.82 -8.60 -37.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355382679.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.423 kcal (2) G-P(sol) polarization free energy of solvation -28.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.98 seconds