Wall clock time and date at job start Tue Mar 31 2020 05:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46662 * 2 1 4 4 C 1.53010 * 109.46752 * 240.00884 * 2 1 3 5 5 C 1.52994 * 109.47010 * 174.99938 * 4 2 1 6 6 C 1.52998 * 109.47077 * 179.97438 * 5 4 2 7 7 C 1.52996 * 109.47406 * 294.99795 * 6 5 4 8 8 C 1.52998 * 109.47406 * 180.02562 * 7 6 5 9 9 C 1.52998 * 109.46972 * 60.00025 * 8 7 6 10 10 C 1.52991 * 109.47289 * 299.99974 * 9 8 7 11 11 C 1.52998 * 109.46972 * 174.99820 * 6 5 4 12 12 N 1.46496 * 109.47378 * 120.01011 * 2 1 3 13 13 C 1.34774 * 119.99544 * 274.99692 * 12 2 1 14 14 O 1.21279 * 120.00472 * 0.02562 * 13 12 2 15 15 C 1.50706 * 120.00020 * 180.02562 * 13 12 2 16 16 C 1.52997 * 109.47238 * 180.02562 * 15 13 12 17 17 C 1.50696 * 109.47055 * 179.97438 * 16 15 13 18 18 H 1.08000 * 120.00290 * 0.02562 * 17 16 15 19 19 C 1.37887 * 120.00079 * 179.97438 * 17 16 15 20 20 N 1.31514 * 119.99907 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 119.99654 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47022 * 89.99986 * 21 19 17 23 23 H 1.48502 * 109.46769 * 209.99494 * 21 19 17 24 24 H 1.48495 * 109.47280 * 329.99669 * 21 19 17 25 25 H 1.09005 * 109.46941 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46755 * 299.99136 * 1 2 3 27 27 H 1.08992 * 109.47534 * 59.99427 * 1 2 3 28 28 H 1.09004 * 109.46333 * 294.99622 * 4 2 1 29 29 H 1.08999 * 109.47264 * 54.99228 * 4 2 1 30 30 H 1.09004 * 109.47169 * 299.99855 * 5 4 2 31 31 H 1.08998 * 109.47247 * 59.99850 * 5 4 2 32 32 H 1.09001 * 109.46910 * 54.99746 * 6 5 4 33 33 H 1.08999 * 109.47245 * 300.00620 * 7 6 5 34 34 H 1.09004 * 109.47139 * 59.99956 * 7 6 5 35 35 H 1.09001 * 109.46910 * 299.99951 * 8 7 6 36 36 H 1.09002 * 109.47166 * 180.02562 * 8 7 6 37 37 H 1.09007 * 109.47022 * 180.02562 * 9 8 7 38 38 H 1.08999 * 109.46921 * 60.00487 * 9 8 7 39 39 H 1.09001 * 109.47105 * 300.00388 * 10 9 8 40 40 H 1.09004 * 109.47393 * 180.02562 * 10 9 8 41 41 H 1.08997 * 109.47667 * 299.99756 * 11 6 5 42 42 H 1.09001 * 109.47364 * 60.00204 * 11 6 5 43 43 H 0.96994 * 120.00700 * 94.99812 * 12 2 1 44 44 H 1.09001 * 109.46953 * 299.99667 * 15 13 12 45 45 H 1.09000 * 109.47318 * 59.99264 * 15 13 12 46 46 H 1.09001 * 109.46832 * 299.99686 * 16 15 13 47 47 H 1.09004 * 109.47261 * 59.99705 * 16 15 13 48 48 H 0.96999 * 119.99682 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2495 5 6 3.5647 -0.6132 -1.3140 6 6 4.0747 -1.3348 -2.5630 7 6 3.7796 -2.8313 -2.4437 8 6 4.2902 -3.5530 -3.6924 9 6 5.7995 -3.3396 -3.8234 10 6 6.0947 -1.8432 -3.9428 11 6 5.5840 -1.1215 -2.6946 12 7 2.0184 -0.6908 1.1960 13 6 2.1472 -0.0185 2.3570 14 8 1.8583 1.1581 2.4118 15 6 2.6501 -0.7289 3.5873 16 6 2.7009 0.2539 4.7588 17 6 3.2033 -0.4567 5.9891 18 1 3.4610 -1.5044 5.9403 19 6 3.3349 0.2310 7.1770 20 7 3.7738 -0.3890 8.2505 21 14 2.8899 2.0433 7.2612 22 1 1.4572 2.1847 7.6253 23 1 3.7297 2.7120 8.2872 24 1 3.1290 2.6737 5.9381 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5139 -0.8898 28 1 1.7516 -1.7714 -1.2058 29 1 1.6052 -0.2616 -2.1371 30 1 3.8531 0.4371 -1.3575 31 1 3.9994 -1.0728 -0.4263 32 1 3.5729 -0.9346 -3.4440 33 1 4.2813 -3.2314 -1.5626 34 1 2.7043 -2.9832 -2.3498 35 1 3.7888 -3.1529 -4.5737 36 1 4.0795 -4.6191 -3.6076 37 1 6.1632 -3.8534 -4.7133 38 1 6.3009 -3.7397 -2.9421 39 1 5.5933 -1.4432 -4.8241 40 1 7.1700 -1.6912 -4.0366 41 1 5.7943 -0.0554 -2.7797 42 1 6.0858 -1.5216 -1.8136 43 1 2.2491 -1.6319 1.1524 44 1 1.9779 -1.5512 3.8323 45 1 3.6494 -1.1208 3.3976 46 1 3.3729 1.0764 4.5140 47 1 1.7014 0.6453 4.9483 48 1 3.8660 0.0947 9.0862 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360206245.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:40 Heat of formation + Delta-G solvation = -98.020123 kcal Electronic energy + Delta-G solvation = -22270.040957 eV Core-core repulsion = 19129.382281 eV Total energy + Delta-G solvation = -3140.658676 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.64412 -38.92937 -36.28463 -33.45189 -33.30307 -31.56036 -31.04548 -30.53947 -28.36398 -26.07131 -24.26794 -22.91109 -21.88255 -20.98424 -20.44508 -19.99545 -19.62668 -17.19910 -16.20991 -15.97850 -15.58916 -14.95509 -14.91635 -14.46997 -14.34613 -14.09057 -13.74561 -13.59067 -13.41403 -13.03384 -12.68968 -12.53280 -12.51543 -12.36478 -12.13215 -11.87452 -11.47861 -11.43112 -11.38189 -11.29633 -11.01258 -10.93422 -10.79712 -10.66038 -10.21638 -10.13972 -10.11948 -10.01029 -9.75824 -9.18677 -9.10931 -8.79416 -8.48630 -6.01192 -3.99614 3.19889 3.39447 3.45784 3.55039 3.57293 4.30102 4.41492 4.47370 4.52838 4.71413 4.82372 4.88039 5.02192 5.11789 5.22498 5.23289 5.25388 5.26126 5.34433 5.37795 5.42834 5.48069 5.57019 5.60212 5.68455 5.72555 5.76115 5.77895 5.87839 5.88808 5.96244 6.00990 6.04868 6.06647 6.12855 6.13839 6.20523 6.25714 6.29045 6.73156 6.79067 7.39851 7.46981 7.80402 7.88225 8.52919 8.74051 9.02293 9.62108 11.11720 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.020853 B = 0.003078 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.390083 B = 9093.488012 C = 9768.902637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.139 3.861 3 H 0.084 0.916 4 C -0.125 4.125 5 C -0.116 4.116 6 C -0.085 4.085 7 C -0.117 4.117 8 C -0.120 4.120 9 C -0.120 4.120 10 C -0.119 4.119 11 C -0.116 4.116 12 N -0.735 5.735 13 C 0.510 3.490 14 O -0.542 6.542 15 C -0.123 4.123 16 C 0.002 3.998 17 C -0.524 4.524 18 H 0.072 0.928 19 C 0.068 3.932 20 N -0.904 5.904 21 Si 0.878 3.122 22 H -0.277 1.277 23 H -0.289 1.289 24 H -0.261 1.261 25 H 0.054 0.946 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.057 0.943 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.060 0.940 42 H 0.063 0.937 43 H 0.396 0.604 44 H 0.084 0.916 45 H 0.084 0.916 46 H 0.023 0.977 47 H 0.018 0.982 48 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.171 -5.571 -27.512 28.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.034 3.966 3 H 0.102 0.898 4 C -0.163 4.163 5 C -0.154 4.154 6 C -0.104 4.104 7 C -0.154 4.154 8 C -0.157 4.157 9 C -0.158 4.158 10 C -0.157 4.157 11 C -0.154 4.154 12 N -0.389 5.389 13 C 0.299 3.701 14 O -0.418 6.418 15 C -0.163 4.163 16 C -0.036 4.036 17 C -0.562 4.562 18 H 0.090 0.910 19 C -0.133 4.133 20 N -0.543 5.543 21 Si 0.705 3.295 22 H -0.203 1.203 23 H -0.215 1.215 24 H -0.185 1.185 25 H 0.073 0.927 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.082 0.918 43 H 0.230 0.770 44 H 0.102 0.898 45 H 0.103 0.897 46 H 0.041 0.959 47 H 0.037 0.963 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.334 -4.671 -27.278 27.677 hybrid contribution -0.123 0.405 0.151 0.449 sum -0.456 -4.266 -27.127 27.464 Atomic orbital electron populations 1.22174 0.95795 1.01837 1.02321 1.20892 0.93646 0.97658 0.84366 0.89810 1.21935 0.96064 1.01059 0.97240 1.21654 0.95047 1.00769 0.97928 1.21163 0.95663 0.95404 0.98146 1.21652 1.00877 0.94864 0.98019 1.21533 0.95819 1.00023 0.98345 1.21540 0.96343 0.96337 1.01579 1.21519 1.00527 0.95426 0.98204 1.21588 0.95510 1.00167 0.98124 1.46245 1.68990 1.13857 1.09795 1.21494 0.76387 0.87543 0.84712 1.90641 1.49595 1.16548 1.85052 1.21663 1.01583 1.00565 0.92477 1.19355 0.97462 0.94598 0.92170 1.21130 1.44067 0.98272 0.92735 0.90976 1.24979 0.94473 0.98287 0.95549 1.69915 1.46943 1.36734 1.00746 0.86791 0.78600 0.85803 0.78334 1.20264 1.21474 1.18519 0.92692 0.91962 0.92177 0.91275 0.90864 0.91892 0.91448 0.91462 0.91846 0.91796 0.92254 0.92220 0.92386 0.91976 0.92242 0.92224 0.92087 0.91840 0.76974 0.89773 0.89749 0.95878 0.96342 0.92747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 9.48 37.16 0.35 -1.47 16 2 C 0.14 1.61 2.57 -67.93 -0.17 1.44 16 3 H 0.08 1.16 7.58 -51.93 -0.39 0.77 16 4 C -0.13 -1.04 4.51 -26.73 -0.12 -1.17 16 5 C -0.12 -1.02 4.57 -26.74 -0.12 -1.14 16 6 C -0.09 -0.64 2.19 -90.62 -0.20 -0.84 16 7 C -0.12 -0.83 4.96 -26.73 -0.13 -0.97 16 8 C -0.12 -0.80 5.92 -26.73 -0.16 -0.96 16 9 C -0.12 -0.81 5.92 -26.74 -0.16 -0.97 16 10 C -0.12 -0.83 5.92 -26.76 -0.16 -0.99 16 11 C -0.12 -0.91 5.20 -26.76 -0.14 -1.05 16 12 N -0.74 -9.65 4.53 -53.80 -0.24 -9.89 16 13 C 0.51 9.29 7.79 -10.98 -0.09 9.20 16 14 O -0.54 -12.06 15.64 5.56 0.09 -11.97 16 15 C -0.12 -2.41 5.64 -27.88 -0.16 -2.56 16 16 C 0.00 0.05 3.33 -27.89 -0.09 -0.04 16 17 C -0.52 -15.16 9.66 -34.44 -0.33 -15.49 16 18 H 0.07 2.17 7.99 -52.49 -0.42 1.76 16 19 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 20 N -0.90 -28.28 13.96 55.43 0.77 -27.51 16 21 Si 0.88 22.85 27.47 -169.99 -4.67 18.18 16 22 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 23 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 24 H -0.26 -6.77 6.54 56.52 0.37 -6.40 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.52 6.56 -51.93 -0.34 0.18 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.66 7.75 -51.93 -0.40 0.25 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.43 6.56 -51.93 -0.34 0.09 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.40 4.15 8.60 -40.82 -0.35 3.80 16 44 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 45 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 46 H 0.02 0.61 7.16 -51.93 -0.37 0.24 16 47 H 0.02 0.48 7.53 -51.93 -0.39 0.09 16 48 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 371.96 15.07 5.61 5.61 Total: -1.00 -33.18 371.96 -9.59 -42.77 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -9.36 Total: -2.13 kcal Atomic # 6 Polarization: -13.28 SS G_CDS: -1.78 Total: -15.05 kcal Atomic # 7 Polarization: -37.93 SS G_CDS: 0.53 Total: -37.40 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: 0.09 Total: -11.97 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -4.67 Total: 18.18 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.18 -9.59 -42.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360206245.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.254 kcal (2) G-P(sol) polarization free energy of solvation -33.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds