Wall clock time and date at job start Tue Mar 31 2020 05:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46641 * 2 1 4 4 C 1.52995 * 109.47023 * 119.99594 * 2 1 3 5 5 C 1.52999 * 109.47075 * 185.00349 * 4 2 1 6 6 C 1.53005 * 109.47395 * 180.02562 * 5 4 2 7 7 C 1.53000 * 109.46730 * 294.99923 * 6 5 4 8 8 C 1.53002 * 109.47310 * 179.97438 * 7 6 5 9 9 C 1.53000 * 109.46832 * 59.99685 * 8 7 6 10 10 C 1.53000 * 109.47430 * 300.00241 * 9 8 7 11 11 C 1.52998 * 109.47159 * 174.99964 * 6 5 4 12 12 N 1.46499 * 109.47070 * 239.99909 * 2 1 3 13 13 C 1.34777 * 120.00199 * 85.00207 * 12 2 1 14 14 O 1.21283 * 119.99750 * 359.97438 * 13 12 2 15 15 C 1.50702 * 119.99928 * 180.27479 * 13 12 2 16 16 C 1.52996 * 109.47159 * 179.72352 * 15 13 12 17 17 C 1.50697 * 109.47491 * 179.97438 * 16 15 13 18 18 H 1.08001 * 119.99437 * 359.97438 * 17 16 15 19 19 C 1.37869 * 120.00278 * 179.97438 * 17 16 15 20 20 N 1.31518 * 120.00172 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 120.00140 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.47213 * 89.99904 * 21 19 17 23 23 H 1.48497 * 109.47216 * 209.99799 * 21 19 17 24 24 H 1.48504 * 109.47159 * 330.00245 * 21 19 17 25 25 H 1.08998 * 109.47598 * 300.00373 * 1 2 3 26 26 H 1.09005 * 109.47473 * 60.00264 * 1 2 3 27 27 H 1.08998 * 109.46925 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47218 * 305.00067 * 4 2 1 29 29 H 1.09000 * 109.47293 * 65.00233 * 4 2 1 30 30 H 1.09000 * 109.46867 * 299.99933 * 5 4 2 31 31 H 1.09000 * 109.47154 * 59.99799 * 5 4 2 32 32 H 1.09004 * 109.46965 * 54.99165 * 6 5 4 33 33 H 1.08998 * 109.47384 * 299.99653 * 7 6 5 34 34 H 1.09002 * 109.47256 * 60.00078 * 7 6 5 35 35 H 1.08998 * 109.46850 * 300.00270 * 8 7 6 36 36 H 1.08998 * 109.47435 * 179.97438 * 8 7 6 37 37 H 1.08999 * 109.47453 * 179.97438 * 9 8 7 38 38 H 1.08999 * 109.47045 * 60.00089 * 9 8 7 39 39 H 1.08998 * 109.47384 * 300.00108 * 10 9 8 40 40 H 1.09002 * 109.47256 * 179.97438 * 10 9 8 41 41 H 1.08998 * 109.46911 * 299.99566 * 11 6 5 42 42 H 1.08998 * 109.47289 * 60.00143 * 11 6 5 43 43 H 0.97000 * 119.99484 * 264.99304 * 12 2 1 44 44 H 1.09004 * 109.46965 * 299.72211 * 15 13 12 45 45 H 1.08994 * 109.46990 * 59.72065 * 15 13 12 46 46 H 1.09004 * 109.47066 * 299.99797 * 16 15 13 47 47 H 1.09000 * 109.47234 * 59.99288 * 16 15 13 48 48 H 0.96998 * 120.00586 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5648 -0.6131 1.3138 6 6 4.0749 -1.3348 2.5627 7 6 3.5648 -0.6140 3.8122 8 6 4.0744 -1.3360 5.0613 9 6 5.6044 -1.3365 5.0615 10 6 6.1144 -2.0573 3.8120 11 6 5.6049 -1.3347 2.5627 12 7 2.0183 -0.6906 -1.1961 13 6 2.1471 -0.0183 -2.3571 14 8 1.8582 1.1583 -2.4117 15 6 2.6435 -0.7303 -3.5891 16 6 2.6898 0.2514 -4.7617 17 6 3.1868 -0.4604 -5.9935 18 1 3.4444 -1.5081 -5.9447 19 6 3.3127 0.2259 -7.1826 20 7 3.7460 -0.3954 -8.2577 21 14 2.8665 2.0378 -7.2671 22 1 4.0644 2.8577 -6.9540 23 1 2.3854 2.3660 -8.6331 24 1 1.7952 2.3303 -6.2812 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6053 -0.2616 2.1370 29 1 1.7516 -1.7714 1.2057 30 1 3.9994 -1.0727 0.4261 31 1 3.8531 0.4372 1.3573 32 1 3.7115 -2.3625 2.5624 33 1 3.9281 0.4136 3.8126 34 1 2.4748 -0.6141 3.8122 35 1 3.7107 -2.3635 5.0606 36 1 3.7114 -0.8222 5.9514 37 1 5.9674 -1.8504 5.9515 38 1 5.9680 -0.3089 5.0620 39 1 5.7508 -3.0848 3.8114 40 1 7.2044 -2.0572 3.8120 41 1 5.9682 -1.8482 1.6725 42 1 5.9681 -0.3070 2.5631 43 1 2.2491 -1.6318 -1.1525 44 1 3.6436 -1.1225 -3.4039 45 1 1.9697 -1.5525 -3.8299 46 1 1.6897 0.6435 -4.9469 47 1 3.3636 1.0736 -4.5208 48 1 3.8350 0.0874 -9.0943 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360206246.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:42 Heat of formation + Delta-G solvation = -98.048683 kcal Electronic energy + Delta-G solvation = -22177.658107 eV Core-core repulsion = 19036.998193 eV Total energy + Delta-G solvation = -3140.659914 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.63809 -38.94104 -36.28822 -33.45310 -33.31324 -31.56132 -31.05781 -30.52242 -28.37920 -26.06961 -24.27111 -22.92257 -21.87512 -20.97941 -20.51806 -19.94775 -19.64506 -17.19750 -16.20554 -15.96885 -15.56320 -15.09867 -14.77637 -14.51056 -14.34974 -14.13516 -13.93008 -13.43012 -13.23078 -13.19471 -12.68172 -12.55116 -12.51279 -12.34990 -12.14680 -11.95548 -11.44057 -11.39498 -11.34261 -11.31563 -11.01702 -10.94601 -10.86012 -10.67791 -10.22293 -10.13643 -10.12334 -10.00911 -9.75675 -9.18560 -9.10980 -8.79615 -8.48600 -6.01098 -3.99602 3.19798 3.39473 3.45820 3.54961 3.57307 4.29379 4.40921 4.46220 4.52864 4.68577 4.84000 4.86875 5.04234 5.06533 5.19573 5.22269 5.24529 5.27724 5.34479 5.39270 5.41244 5.46918 5.56465 5.60020 5.68595 5.70089 5.72829 5.78568 5.86343 5.89200 5.94257 5.99949 6.02776 6.08408 6.13582 6.15443 6.18350 6.24592 6.28569 6.73156 6.79055 7.39873 7.46941 7.80405 7.88220 8.52937 8.74011 9.02294 9.62177 11.11784 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.023865 B = 0.002922 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.974021 B = 9580.787892 C =10262.296489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.139 3.861 3 H 0.084 0.916 4 C -0.125 4.125 5 C -0.116 4.116 6 C -0.086 4.086 7 C -0.116 4.116 8 C -0.120 4.120 9 C -0.120 4.120 10 C -0.120 4.120 11 C -0.116 4.116 12 N -0.736 5.736 13 C 0.510 3.490 14 O -0.542 6.542 15 C -0.123 4.123 16 C 0.002 3.998 17 C -0.524 4.524 18 H 0.072 0.928 19 C 0.068 3.932 20 N -0.904 5.904 21 Si 0.878 3.122 22 H -0.277 1.277 23 H -0.289 1.289 24 H -0.261 1.261 25 H 0.059 0.941 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.063 0.937 42 H 0.061 0.939 43 H 0.397 0.603 44 H 0.084 0.916 45 H 0.084 0.916 46 H 0.023 0.977 47 H 0.018 0.982 48 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.310 -4.107 28.430 28.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.034 3.966 3 H 0.102 0.898 4 C -0.163 4.163 5 C -0.154 4.154 6 C -0.104 4.104 7 C -0.154 4.154 8 C -0.157 4.157 9 C -0.158 4.158 10 C -0.157 4.157 11 C -0.154 4.154 12 N -0.389 5.389 13 C 0.299 3.701 14 O -0.418 6.418 15 C -0.163 4.163 16 C -0.036 4.036 17 C -0.562 4.562 18 H 0.090 0.910 19 C -0.133 4.133 20 N -0.543 5.543 21 Si 0.705 3.295 22 H -0.203 1.203 23 H -0.215 1.215 24 H -0.185 1.185 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.094 0.906 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.230 0.770 44 H 0.102 0.898 45 H 0.103 0.897 46 H 0.041 0.959 47 H 0.037 0.963 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.482 -3.207 28.194 28.380 hybrid contribution -0.066 0.415 -0.143 0.444 sum -0.549 -2.792 28.051 28.195 Atomic orbital electron populations 1.22175 0.95794 1.01845 1.02320 1.20893 0.93651 0.97667 0.84349 0.89804 1.21934 0.96108 1.00943 0.97302 1.21655 0.95041 1.01030 0.97652 1.21172 0.95204 0.99584 0.94455 1.21647 1.00351 0.99360 0.94002 1.21538 0.95651 1.00692 0.97860 1.21540 0.95807 1.00712 0.97712 1.21541 1.00088 0.99373 0.94712 1.21605 0.95231 1.00842 0.97698 1.46256 1.68988 1.13863 1.09818 1.21497 0.76357 0.87556 0.84724 1.90642 1.49535 1.16577 1.85089 1.21661 1.01630 1.00557 0.92436 1.19356 0.97675 0.94429 0.92134 1.21126 1.44135 0.98314 0.92615 0.90972 1.24975 0.94452 0.98305 0.95557 1.69913 1.47035 1.36730 1.00663 0.86792 0.79792 0.85727 0.77221 1.20259 1.21474 1.18526 0.92175 0.91966 0.92683 0.90593 0.91560 0.91465 0.91888 0.91317 0.92048 0.91818 0.92148 0.92303 0.92375 0.92123 0.92116 0.92200 0.91872 0.92010 0.76958 0.89774 0.89734 0.95894 0.96330 0.92746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 9.48 37.16 0.35 -1.47 16 2 C 0.14 1.62 2.57 -67.93 -0.17 1.44 16 3 H 0.08 1.16 7.58 -51.93 -0.39 0.77 16 4 C -0.13 -1.04 4.51 -26.73 -0.12 -1.16 16 5 C -0.12 -1.01 4.57 -26.73 -0.12 -1.14 16 6 C -0.09 -0.65 2.19 -90.62 -0.20 -0.84 16 7 C -0.12 -0.81 4.96 -26.73 -0.13 -0.95 16 8 C -0.12 -0.78 5.92 -26.73 -0.16 -0.94 16 9 C -0.12 -0.79 5.92 -26.73 -0.16 -0.95 16 10 C -0.12 -0.83 5.93 -26.70 -0.16 -0.99 16 11 C -0.12 -0.91 5.21 -26.70 -0.14 -1.04 16 12 N -0.74 -9.67 4.53 -53.81 -0.24 -9.91 16 13 C 0.51 9.29 7.79 -10.98 -0.09 9.21 16 14 O -0.54 -12.07 15.65 5.55 0.09 -11.98 16 15 C -0.12 -2.41 5.64 -27.88 -0.16 -2.56 16 16 C 0.00 0.05 3.33 -27.89 -0.09 -0.04 16 17 C -0.52 -15.16 9.66 -34.44 -0.33 -15.49 16 18 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 19 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 20 N -0.90 -28.28 13.96 55.43 0.77 -27.50 16 21 Si 0.88 22.85 27.47 -169.99 -4.67 18.18 16 22 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 23 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 24 H -0.26 -6.78 6.54 56.52 0.37 -6.41 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.08 0.56 6.57 -51.93 -0.34 0.22 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.65 7.75 -51.93 -0.40 0.25 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.42 6.57 -51.93 -0.34 0.08 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 38 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.40 4.15 8.60 -40.82 -0.35 3.80 16 44 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 45 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16 46 H 0.02 0.60 7.15 -51.93 -0.37 0.23 16 47 H 0.02 0.48 7.53 -51.93 -0.39 0.09 16 48 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 371.97 15.07 5.61 5.61 Total: -1.00 -33.19 371.97 -9.59 -42.78 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -9.36 Total: -2.19 kcal Atomic # 6 Polarization: -13.20 SS G_CDS: -1.78 Total: -14.98 kcal Atomic # 7 Polarization: -37.94 SS G_CDS: 0.53 Total: -37.41 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: 0.09 Total: -11.98 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -4.67 Total: 18.18 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.19 -9.59 -42.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360206246.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.266 kcal (2) G-P(sol) polarization free energy of solvation -33.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds