Wall clock time and date at job start Tue Mar 31 2020 05:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.58109 * 2 1 4 4 C 1.53189 * 109.58301 * 239.71684 * 2 1 3 5 5 C 1.53049 * 109.31068 * 185.43371 * 4 2 1 6 6 H 1.09002 * 109.45779 * 301.36051 * 5 4 2 7 7 C 1.52997 * 109.45940 * 181.38549 * 5 4 2 8 8 C 1.53002 * 109.47357 * 60.00132 * 7 5 4 9 9 C 1.53005 * 109.47114 * 179.97438 * 7 5 4 10 10 C 1.52994 * 109.47185 * 300.00074 * 7 5 4 11 11 C 1.53035 * 109.53479 * 61.36481 * 5 4 2 12 12 C 1.53195 * 109.31719 * 298.63270 * 11 5 4 13 13 N 1.46921 * 109.58690 * 120.28371 * 2 1 3 14 14 C 1.34773 * 120.63347 * 353.53834 * 13 2 1 15 15 O 1.21286 * 119.99915 * 5.07256 * 14 13 2 16 16 C 1.50702 * 120.00375 * 185.06975 * 14 13 2 17 17 C 1.52998 * 109.46998 * 180.02562 * 16 14 13 18 18 C 1.50707 * 109.46692 * 179.97438 * 17 16 14 19 19 H 1.07996 * 120.00118 * 0.02562 * 18 17 16 20 20 C 1.37882 * 119.99956 * 180.02562 * 18 17 16 21 21 N 1.31514 * 120.00158 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 119.99849 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47010 * 90.00165 * 22 20 18 24 24 H 1.48493 * 109.47306 * 210.00015 * 22 20 18 25 25 H 1.48501 * 109.47357 * 330.00500 * 22 20 18 26 26 H 1.09001 * 109.46759 * 183.90411 * 1 2 3 27 27 H 1.08999 * 109.46890 * 303.89887 * 1 2 3 28 28 H 1.09000 * 109.47155 * 63.90463 * 1 2 3 29 29 H 1.08998 * 109.49900 * 305.38429 * 4 2 1 30 30 H 1.08999 * 109.50115 * 65.48623 * 4 2 1 31 31 H 1.09002 * 109.47146 * 59.99288 * 8 7 5 32 32 H 1.08999 * 109.47347 * 179.97438 * 8 7 5 33 33 H 1.09003 * 109.46924 * 299.99767 * 8 7 5 34 34 H 1.08999 * 109.46910 * 59.99577 * 9 7 5 35 35 H 1.08995 * 109.47070 * 180.02562 * 9 7 5 36 36 H 1.09002 * 109.46703 * 300.00292 * 9 7 5 37 37 H 1.08993 * 109.47473 * 60.00055 * 10 7 5 38 38 H 1.09001 * 109.47287 * 180.02562 * 10 7 5 39 39 H 1.09002 * 109.47283 * 299.99608 * 10 7 5 40 40 H 1.08999 * 109.49859 * 58.58987 * 11 5 4 41 41 H 1.09005 * 109.49768 * 178.68661 * 11 5 4 42 42 H 1.08998 * 109.59026 * 174.42559 * 12 11 5 43 43 H 1.09003 * 109.58756 * 294.71056 * 12 11 5 44 44 H 1.08995 * 109.47058 * 300.00221 * 16 14 13 45 45 H 1.08996 * 109.46953 * 60.00384 * 16 14 13 46 46 H 1.08999 * 109.47642 * 299.99564 * 17 16 14 47 47 H 1.08998 * 109.47570 * 60.00822 * 17 16 14 48 48 H 0.97001 * 119.99981 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0435 -0.7278 -1.2463 5 6 3.5679 -0.8433 -1.1730 6 1 4.0045 0.1529 -1.1020 7 6 4.0875 -1.5392 -2.4326 8 6 3.6967 -0.7212 -3.6651 9 6 5.6115 -1.6542 -2.3598 10 6 3.4742 -2.9372 -2.5328 11 6 3.9603 -1.6608 0.0598 12 6 3.4686 -0.9436 1.3210 13 7 2.0226 -0.6980 1.1953 14 6 1.1672 -1.1064 2.1534 15 8 -0.0284 -0.9816 1.9922 16 6 1.6962 -1.7181 3.4250 17 6 0.5256 -2.0923 4.3364 18 6 1.0547 -2.7046 5.6077 19 1 2.1193 -2.8153 5.7515 20 6 0.1795 -3.1235 6.5874 21 7 0.6412 -3.6573 7.6971 22 14 -1.6619 -2.9313 6.3390 23 1 -2.2027 -4.1491 5.6836 24 1 -2.3221 -2.7433 7.6558 25 1 -1.9249 -1.7488 5.4801 26 1 -0.3633 -1.0253 0.0700 27 1 -0.3633 0.5732 0.8530 28 1 -0.3633 0.4520 -0.9229 29 1 1.6049 -1.7246 -1.2921 30 1 1.7638 -0.1655 -2.1372 31 1 4.1336 0.2748 -3.5937 32 1 4.0673 -1.2167 -4.5625 33 1 2.6110 -0.6389 -3.7172 34 1 5.8903 -2.2366 -1.4816 35 1 5.9817 -2.1495 -3.2574 36 1 6.0480 -0.6580 -2.2886 37 1 2.3886 -2.8549 -2.5849 38 1 3.8447 -3.4331 -3.4299 39 1 3.7527 -3.5200 -1.6547 40 1 3.5037 -2.6488 0.0017 41 1 5.0449 -1.7625 0.0987 42 1 3.6577 -1.5683 2.1940 43 1 3.9939 0.0053 1.4301 44 1 2.2707 -2.6130 3.1861 45 1 2.3382 -0.9994 3.9342 46 1 -0.0493 -1.1976 4.5754 47 1 -0.1161 -2.8113 3.8270 48 1 0.0255 -3.9516 8.3865 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360621715.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:27 Heat of formation + Delta-G solvation = -54.557405 kcal Electronic energy + Delta-G solvation = -23544.141845 eV Core-core repulsion = 20405.367854 eV Total energy + Delta-G solvation = -3138.773991 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.55763 -38.72436 -35.83228 -33.81655 -32.71996 -31.47041 -30.90200 -28.22769 -27.55970 -26.88415 -25.98221 -24.40870 -22.35500 -21.71533 -20.35059 -18.65642 -18.37330 -17.02232 -16.08598 -15.84346 -15.50118 -15.13176 -14.59797 -14.40865 -14.26343 -14.00588 -13.76869 -13.39027 -13.05954 -12.57488 -12.52852 -12.43601 -12.39861 -12.14747 -12.12991 -12.04071 -11.94767 -11.49352 -11.33815 -11.22781 -11.22275 -10.94286 -10.83711 -10.55337 -10.31390 -10.23745 -10.08158 -9.94289 -9.72952 -9.15626 -8.53501 -8.49407 -8.31336 -6.01416 -3.99806 3.15424 3.25555 3.39105 3.45628 3.56796 4.40119 4.45176 4.51092 4.52519 4.80605 4.94466 5.00941 5.04460 5.18978 5.22021 5.32515 5.34272 5.37403 5.42292 5.48757 5.52567 5.55549 5.63544 5.67233 5.72314 5.72681 5.78501 5.84240 5.88250 5.91468 5.97282 6.05093 6.08471 6.10263 6.12206 6.20654 6.28415 6.43088 6.57296 6.73636 6.92826 7.39520 7.46789 7.73557 7.83537 8.52362 8.72241 9.01881 9.61921 11.11482 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.028003 B = 0.003842 C = 0.003590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.639710 B = 7286.352250 C = 7798.420095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.143 3.857 3 H 0.062 0.938 4 C -0.128 4.128 5 C -0.075 4.075 6 H 0.069 0.931 7 C -0.064 4.064 8 C -0.143 4.143 9 C -0.143 4.143 10 C -0.146 4.146 11 C -0.134 4.134 12 C 0.108 3.892 13 N -0.619 5.619 14 C 0.512 3.488 15 O -0.533 6.533 16 C -0.123 4.123 17 C 0.003 3.997 18 C -0.524 4.524 19 H 0.072 0.928 20 C 0.069 3.931 21 N -0.904 5.904 22 Si 0.877 3.123 23 H -0.277 1.277 24 H -0.289 1.289 25 H -0.261 1.261 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.034 0.966 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.051 0.949 36 H 0.053 0.947 37 H 0.057 0.943 38 H 0.050 0.950 39 H 0.059 0.941 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.092 0.908 43 H 0.064 0.936 44 H 0.082 0.918 45 H 0.083 0.917 46 H 0.023 0.977 47 H 0.018 0.982 48 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.394 6.492 -22.974 25.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.040 3.960 3 H 0.080 0.920 4 C -0.166 4.166 5 C -0.093 4.093 6 H 0.088 0.912 7 C -0.064 4.064 8 C -0.200 4.200 9 C -0.201 4.201 10 C -0.203 4.203 11 C -0.172 4.172 12 C -0.015 4.015 13 N -0.355 5.355 14 C 0.303 3.697 15 O -0.410 6.410 16 C -0.162 4.162 17 C -0.035 4.035 18 C -0.562 4.562 19 H 0.090 0.910 20 C -0.133 4.133 21 N -0.543 5.543 22 Si 0.705 3.295 23 H -0.203 1.203 24 H -0.215 1.215 25 H -0.185 1.185 26 H 0.091 0.909 27 H 0.090 0.910 28 H 0.053 0.947 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.078 0.922 40 H 0.090 0.910 41 H 0.095 0.905 42 H 0.110 0.890 43 H 0.082 0.918 44 H 0.101 0.899 45 H 0.102 0.898 46 H 0.041 0.959 47 H 0.036 0.964 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 8.681 6.485 -22.871 25.308 hybrid contribution -0.740 0.020 -0.045 0.742 sum 7.941 6.505 -22.916 25.110 Atomic orbital electron populations 1.22199 0.92753 1.04047 1.00152 1.21193 0.95730 0.94657 0.84413 0.91986 1.22184 0.95277 1.01654 0.97494 1.21152 0.95462 0.98941 0.93767 0.91238 1.20533 0.95387 0.95628 0.94837 1.21929 1.01558 0.99588 0.96969 1.21930 0.94717 1.01649 1.01754 1.21982 1.00948 0.95783 1.01600 1.22111 1.01187 0.99837 0.94077 1.21758 0.80516 1.00378 0.98884 1.48348 1.07202 1.59233 1.20692 1.21445 0.86379 0.76949 0.84923 1.90694 1.15991 1.55012 1.79320 1.21714 1.01879 1.00478 0.92178 1.19361 0.93035 0.97033 0.94100 1.21123 0.95254 1.39995 0.99787 0.91011 1.24973 0.98941 0.94433 0.94910 1.69913 1.35074 1.41915 1.07437 0.86793 0.85749 0.79607 0.77388 1.20280 1.21485 1.18524 0.90917 0.91004 0.94697 0.91151 0.90989 0.92815 0.92936 0.92326 0.92188 0.92940 0.92796 0.92366 0.93075 0.92237 0.91010 0.90547 0.89018 0.91813 0.89928 0.89843 0.95890 0.96362 0.92752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.95 7.59 37.16 0.28 -1.67 16 2 C 0.14 1.81 3.48 -67.60 -0.24 1.57 16 3 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 4 C -0.13 -1.29 3.94 -26.61 -0.10 -1.40 16 5 C -0.07 -0.65 1.51 -90.58 -0.14 -0.78 16 6 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 7 C -0.06 -0.49 0.57 -154.51 -0.09 -0.57 16 8 C -0.14 -1.01 8.12 37.16 0.30 -0.71 16 9 C -0.14 -1.00 8.12 37.16 0.30 -0.69 16 10 C -0.15 -1.20 7.77 37.15 0.29 -0.91 16 11 C -0.13 -1.25 4.65 -26.61 -0.12 -1.37 16 12 C 0.11 1.20 6.34 -3.55 -0.02 1.18 16 13 N -0.62 -8.84 2.98 -164.99 -0.49 -9.33 16 14 C 0.51 9.50 7.61 -10.99 -0.08 9.42 16 15 O -0.53 -11.49 11.38 5.55 0.06 -11.43 16 16 C -0.12 -2.43 4.05 -27.88 -0.11 -2.54 16 17 C 0.00 0.07 3.33 -27.88 -0.09 -0.03 16 18 C -0.52 -15.09 9.66 -34.43 -0.33 -15.42 16 19 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 20 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 21 N -0.90 -28.20 13.96 55.43 0.77 -27.43 16 22 Si 0.88 22.78 27.47 -169.99 -4.67 18.11 16 23 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 24 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 25 H -0.26 -6.75 6.54 56.52 0.37 -6.38 16 26 H 0.07 1.22 6.73 -51.93 -0.35 0.87 16 27 H 0.07 1.21 6.76 -51.93 -0.35 0.86 16 28 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.80 6.51 -51.93 -0.34 0.46 16 30 H 0.07 0.64 6.36 -51.93 -0.33 0.31 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.43 6.40 -51.93 -0.33 0.09 16 34 H 0.06 0.42 6.40 -51.93 -0.33 0.09 16 35 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 36 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 37 H 0.06 0.51 6.46 -51.93 -0.34 0.18 16 38 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.06 0.51 6.46 -51.93 -0.34 0.18 16 40 H 0.07 0.75 6.51 -51.93 -0.34 0.41 16 41 H 0.08 0.60 6.36 -51.93 -0.33 0.27 16 42 H 0.09 1.05 5.99 -51.93 -0.31 0.74 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.08 1.52 7.48 -51.93 -0.39 1.13 16 45 H 0.08 1.55 8.12 -51.93 -0.42 1.13 16 46 H 0.02 0.60 7.16 -51.93 -0.37 0.23 16 47 H 0.02 0.47 7.53 -51.93 -0.39 0.08 16 48 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 349.58 15.07 5.27 5.27 Total: -1.00 -32.33 349.58 -7.96 -40.29 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -8.65 Total: -3.50 kcal Atomic # 6 Polarization: -11.73 SS G_CDS: -0.26 Total: -11.98 kcal Atomic # 7 Polarization: -37.03 SS G_CDS: 0.28 Total: -36.75 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.06 Total: -11.43 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -4.67 Total: 18.11 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.33 -7.96 -40.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360621715.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.268 kcal (2) G-P(sol) polarization free energy of solvation -32.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds