Wall clock time and date at job start Tue Mar 31 2020 05:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.58684 * 2 1 4 4 C 1.53191 * 109.58760 * 239.71394 * 2 1 3 5 5 C 1.53044 * 109.31440 * 294.71017 * 4 2 1 6 6 H 1.08994 * 109.45986 * 58.65006 * 5 4 2 7 7 C 1.52997 * 109.45778 * 178.62736 * 5 4 2 8 8 C 1.52996 * 109.47373 * 60.00171 * 7 5 4 9 9 C 1.53003 * 109.46936 * 180.02562 * 7 5 4 10 10 C 1.52996 * 109.47258 * 299.99778 * 7 5 4 11 11 C 1.53040 * 109.53662 * 298.63203 * 5 4 2 12 12 C 1.53197 * 109.31110 * 61.36306 * 11 5 4 13 13 N 1.46926 * 109.58357 * 120.28448 * 2 1 3 14 14 C 1.34780 * 120.63278 * 246.32196 * 13 2 1 15 15 O 1.21288 * 119.99578 * 0.02562 * 14 13 2 16 16 C 1.50697 * 120.00489 * 180.02562 * 14 13 2 17 17 C 1.52998 * 109.46984 * 179.97438 * 16 14 13 18 18 C 1.50709 * 109.46761 * 179.97438 * 17 16 14 19 19 H 1.08001 * 119.99741 * 0.02562 * 18 17 16 20 20 C 1.37874 * 119.99573 * 179.97438 * 18 17 16 21 21 N 1.31521 * 119.99479 * 180.02562 * 20 18 17 22 22 Si 1.86793 * 120.00502 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47534 * 89.99472 * 22 20 18 24 24 H 1.48496 * 109.47290 * 209.99647 * 22 20 18 25 25 H 1.48504 * 109.47212 * 329.99793 * 22 20 18 26 26 H 1.08995 * 109.47640 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47096 * 300.00545 * 1 2 3 28 28 H 1.09001 * 109.46848 * 59.99915 * 1 2 3 29 29 H 1.09003 * 109.49294 * 54.66096 * 4 2 1 30 30 H 1.08997 * 109.50161 * 174.75608 * 4 2 1 31 31 H 1.08996 * 109.47572 * 59.99680 * 8 7 5 32 32 H 1.09001 * 109.46954 * 180.02562 * 8 7 5 33 33 H 1.09005 * 109.47062 * 299.99608 * 8 7 5 34 34 H 1.09000 * 109.47162 * 59.99753 * 9 7 5 35 35 H 1.08998 * 109.47263 * 180.02562 * 9 7 5 36 36 H 1.09004 * 109.46723 * 299.99906 * 9 7 5 37 37 H 1.08996 * 109.47413 * 59.99954 * 10 7 5 38 38 H 1.09001 * 109.47496 * 180.02562 * 10 7 5 39 39 H 1.09000 * 109.47038 * 300.00369 * 10 7 5 40 40 H 1.08995 * 109.49643 * 181.31582 * 11 5 4 41 41 H 1.08996 * 109.49892 * 301.41776 * 11 5 4 42 42 H 1.09001 * 109.58145 * 65.15551 * 12 11 5 43 43 H 1.08998 * 109.58437 * 185.57393 * 12 11 5 44 44 H 1.09004 * 109.46922 * 300.00225 * 16 14 13 45 45 H 1.08997 * 109.46776 * 60.00082 * 16 14 13 46 46 H 1.08992 * 109.47158 * 300.00067 * 17 16 14 47 47 H 1.09006 * 109.47022 * 60.00441 * 17 16 14 48 48 H 0.97002 * 119.99720 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7279 -1.2463 5 6 1.6444 -2.2034 -1.1712 6 1 0.5598 -2.2830 -1.0991 7 6 2.1261 -2.9264 -2.4306 8 6 3.6486 -2.8143 -2.5323 9 6 1.7267 -4.4015 -2.3561 10 6 1.4841 -2.2864 -3.6631 11 6 2.2858 -2.8450 0.0614 12 6 1.7750 -2.1411 1.3226 13 7 2.0225 -0.6981 1.1954 14 6 2.6915 -0.0285 2.1549 15 8 2.8916 1.1619 2.0364 16 6 3.1908 -0.7587 3.3749 17 6 3.9111 0.2252 4.2989 18 6 4.4099 -0.5050 5.5193 19 1 4.2313 -1.5649 5.6249 20 6 5.0950 0.1799 6.5003 21 7 5.5308 -0.4575 7.5650 22 14 5.4045 2.0129 6.3173 23 1 4.2789 2.7680 6.9240 24 1 6.6699 2.3725 7.0060 25 1 5.5105 2.3556 4.8762 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.6056 -0.2774 -2.1370 30 1 3.1295 -0.6467 -1.2935 31 1 4.1060 -3.2703 -1.6543 32 1 3.9916 -3.3290 -3.4298 33 1 3.9327 -1.7633 -2.5856 34 1 0.6420 -4.4810 -2.2838 35 1 2.0702 -4.9167 -3.2531 36 1 2.1837 -4.8577 -1.4779 37 1 1.7682 -1.2355 -3.7164 38 1 1.8269 -2.8018 -4.5603 39 1 0.3995 -2.3663 -3.5906 40 1 2.0201 -3.9013 0.1015 41 1 3.3694 -2.7438 0.0020 42 1 0.7049 -2.3179 1.4316 43 1 2.3020 -2.5269 2.1952 44 1 2.3471 -1.2029 3.9031 45 1 3.8828 -1.5438 3.0704 46 1 4.7547 0.6689 3.7704 47 1 3.2193 1.0106 4.6034 48 1 6.0125 0.0244 8.2554 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360621717.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:30 Heat of formation + Delta-G solvation = -69.181262 kcal Electronic energy + Delta-G solvation = -23502.093202 eV Core-core repulsion = 20362.685074 eV Total energy + Delta-G solvation = -3139.408129 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.54514 -38.63091 -36.06787 -33.60994 -32.64287 -31.41577 -30.95128 -28.32458 -27.55756 -27.05251 -26.16048 -24.35442 -22.69681 -21.68870 -19.98737 -18.92607 -17.99018 -17.19324 -16.27679 -15.70000 -15.31735 -15.05786 -14.58172 -14.32875 -14.23133 -14.10741 -13.86548 -13.40501 -13.24145 -13.02505 -12.57652 -12.51248 -12.24797 -12.17539 -12.12428 -12.08075 -11.95758 -11.54248 -11.40621 -11.30231 -11.13087 -10.94607 -10.91354 -10.48476 -10.30895 -10.11032 -10.06257 -9.99078 -9.75597 -9.18203 -9.06479 -8.49412 -8.39252 -6.01210 -3.99604 3.15419 3.25712 3.39553 3.45976 3.57481 4.41159 4.46173 4.49283 4.52955 4.78270 4.93370 5.01710 5.05158 5.13448 5.24332 5.31747 5.34448 5.35118 5.38093 5.41622 5.47217 5.52221 5.57485 5.62476 5.69739 5.72194 5.73509 5.80202 5.81298 5.88765 5.93757 6.02035 6.04101 6.07456 6.09604 6.12317 6.19900 6.24824 6.41267 6.69732 6.84309 7.39779 7.46752 7.72689 7.82711 8.52175 8.69414 9.01921 9.62183 11.11661 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.027610 B = 0.003778 C = 0.003594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.898233 B = 7408.586419 C = 7788.611903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.134 3.866 3 H 0.096 0.904 4 C -0.125 4.125 5 C -0.075 4.075 6 H 0.073 0.927 7 C -0.064 4.064 8 C -0.146 4.146 9 C -0.143 4.143 10 C -0.143 4.143 11 C -0.134 4.134 12 C 0.107 3.893 13 N -0.616 5.616 14 C 0.513 3.487 15 O -0.543 6.543 16 C -0.120 4.120 17 C 0.002 3.998 18 C -0.523 4.523 19 H 0.072 0.928 20 C 0.069 3.931 21 N -0.904 5.904 22 Si 0.877 3.123 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.261 1.261 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.050 0.950 33 H 0.057 0.943 34 H 0.053 0.947 35 H 0.051 0.949 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.051 0.949 39 H 0.053 0.947 40 H 0.076 0.924 41 H 0.071 0.929 42 H 0.063 0.937 43 H 0.092 0.908 44 H 0.084 0.916 45 H 0.084 0.916 46 H 0.023 0.977 47 H 0.018 0.982 48 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.463 -7.100 -22.936 26.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.031 3.969 3 H 0.114 0.886 4 C -0.163 4.163 5 C -0.093 4.093 6 H 0.091 0.909 7 C -0.064 4.064 8 C -0.203 4.203 9 C -0.200 4.200 10 C -0.200 4.200 11 C -0.172 4.172 12 C -0.017 4.017 13 N -0.351 5.351 14 C 0.304 3.696 15 O -0.419 6.419 16 C -0.160 4.160 17 C -0.036 4.036 18 C -0.561 4.561 19 H 0.090 0.910 20 C -0.132 4.132 21 N -0.543 5.543 22 Si 0.704 3.296 23 H -0.203 1.203 24 H -0.215 1.215 25 H -0.185 1.185 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.094 0.906 41 H 0.090 0.910 42 H 0.082 0.918 43 H 0.110 0.890 44 H 0.102 0.898 45 H 0.103 0.897 46 H 0.041 0.959 47 H 0.037 0.963 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.245 -6.422 -22.814 25.820 hybrid contribution 0.145 0.794 0.015 0.807 sum -10.099 -5.628 -22.799 25.563 Atomic orbital electron populations 1.22126 0.95560 1.02019 1.02033 1.21064 0.93668 0.97698 0.84506 0.88638 1.22079 1.01726 0.95209 0.97278 1.21177 1.00082 0.94389 0.93700 0.90903 1.20539 0.95730 0.95274 0.94877 1.21986 0.94751 1.01993 1.01602 1.21929 1.01125 0.95233 1.01759 1.21924 1.00339 1.00777 0.96975 1.22110 1.01482 0.99524 0.94103 1.21714 1.00779 0.80283 0.98890 1.48318 1.57217 1.08829 1.20767 1.21521 0.76169 0.87729 0.84226 1.90632 1.56856 1.15777 1.78664 1.21675 1.01154 1.00388 0.92800 1.19373 0.95635 0.94448 0.94169 1.21117 1.35622 0.97049 1.02344 0.90972 1.24969 0.94995 0.98344 0.94939 1.69917 1.38653 1.36383 1.09372 0.86797 0.77645 0.85935 0.79200 1.20256 1.21457 1.18535 0.92291 0.92418 0.91971 0.90913 0.91259 0.92209 0.93093 0.92384 0.92814 0.92957 0.92190 0.92346 0.92960 0.92824 0.90598 0.91003 0.91841 0.89019 0.89782 0.89744 0.95891 0.96340 0.92751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 9.03 37.16 0.34 -1.33 16 2 C 0.13 1.67 3.20 -67.60 -0.22 1.46 16 3 H 0.10 1.43 7.01 -51.93 -0.36 1.06 16 4 C -0.12 -1.24 4.12 -26.61 -0.11 -1.35 16 5 C -0.08 -0.63 1.31 -90.58 -0.12 -0.75 16 6 H 0.07 0.61 6.50 -51.93 -0.34 0.27 16 7 C -0.06 -0.48 0.57 -154.51 -0.09 -0.57 16 8 C -0.15 -1.19 7.77 37.16 0.29 -0.90 16 9 C -0.14 -0.99 8.12 37.16 0.30 -0.68 16 10 C -0.14 -0.99 8.12 37.16 0.30 -0.69 16 11 C -0.13 -1.24 4.65 -26.61 -0.12 -1.37 16 12 C 0.11 1.19 5.93 -3.69 -0.02 1.17 16 13 N -0.62 -8.83 2.69 -165.19 -0.44 -9.27 16 14 C 0.51 9.76 7.70 -10.99 -0.08 9.67 16 15 O -0.54 -12.40 15.40 5.55 0.09 -12.31 16 16 C -0.12 -2.41 3.99 -27.89 -0.11 -2.52 16 17 C 0.00 0.04 3.33 -27.88 -0.09 -0.05 16 18 C -0.52 -15.13 9.66 -34.44 -0.33 -15.47 16 19 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 20 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 21 N -0.90 -28.23 13.96 55.43 0.77 -27.46 16 22 Si 0.88 22.88 27.47 -169.99 -4.67 18.21 16 23 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 24 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 25 H -0.26 -6.80 6.54 56.52 0.37 -6.43 16 26 H 0.06 0.55 5.74 -51.93 -0.30 0.25 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.63 6.36 -51.93 -0.33 0.29 16 30 H 0.07 0.78 6.51 -51.93 -0.34 0.44 16 31 H 0.06 0.51 6.46 -51.93 -0.34 0.18 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.51 6.46 -51.93 -0.34 0.17 16 34 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.06 0.42 6.40 -51.93 -0.33 0.08 16 37 H 0.06 0.41 6.40 -51.93 -0.33 0.08 16 38 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.08 0.59 6.36 -51.93 -0.33 0.26 16 41 H 0.07 0.75 6.51 -51.93 -0.34 0.41 16 42 H 0.06 0.63 7.50 -51.93 -0.39 0.24 16 43 H 0.09 1.06 5.94 -51.93 -0.31 0.75 16 44 H 0.08 1.56 7.95 -51.93 -0.41 1.15 16 45 H 0.08 1.57 7.69 -51.93 -0.40 1.17 16 46 H 0.02 0.61 7.16 -51.93 -0.37 0.24 16 47 H 0.02 0.48 7.53 -51.93 -0.39 0.09 16 48 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 350.99 15.07 5.29 5.29 Total: -1.00 -33.13 350.99 -7.62 -40.76 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: -8.49 Total: -3.80 kcal Atomic # 6 Polarization: -11.24 SS G_CDS: -0.17 Total: -11.41 kcal Atomic # 7 Polarization: -37.06 SS G_CDS: 0.33 Total: -36.73 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: 0.09 Total: -12.31 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -4.67 Total: 18.21 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.13 -7.62 -40.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360621717.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.426 kcal (2) G-P(sol) polarization free energy of solvation -33.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds