Wall clock time and date at job start Tue Mar 31 2020 05:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.58684 * 2 1 4 4 C 1.53191 * 109.58760 * 239.71394 * 2 1 3 5 5 C 1.53044 * 109.31440 * 294.71017 * 4 2 1 6 6 H 1.08994 * 109.45986 * 58.65006 * 5 4 2 7 7 C 1.52997 * 109.45778 * 178.62736 * 5 4 2 8 8 C 1.52996 * 109.47373 * 60.00171 * 7 5 4 9 9 C 1.53003 * 109.46936 * 180.02562 * 7 5 4 10 10 C 1.52996 * 109.47258 * 299.99778 * 7 5 4 11 11 C 1.53040 * 109.53662 * 298.63203 * 5 4 2 12 12 C 1.53197 * 109.31110 * 61.36306 * 11 5 4 13 13 N 1.46926 * 109.58357 * 120.28448 * 2 1 3 14 14 C 1.34780 * 120.63278 * 246.32196 * 13 2 1 15 15 O 1.21288 * 119.99578 * 0.02562 * 14 13 2 16 16 C 1.50697 * 120.00489 * 180.02562 * 14 13 2 17 17 C 1.52998 * 109.46984 * 179.97438 * 16 14 13 18 18 C 1.50709 * 109.46761 * 179.97438 * 17 16 14 19 19 H 1.08001 * 119.99741 * 0.02562 * 18 17 16 20 20 C 1.37874 * 119.99573 * 179.97438 * 18 17 16 21 21 N 1.31521 * 119.99479 * 180.02562 * 20 18 17 22 22 Si 1.86793 * 120.00502 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47534 * 89.99472 * 22 20 18 24 24 H 1.48496 * 109.47290 * 209.99647 * 22 20 18 25 25 H 1.48504 * 109.47212 * 329.99793 * 22 20 18 26 26 H 1.08995 * 109.47640 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47096 * 300.00545 * 1 2 3 28 28 H 1.09001 * 109.46848 * 59.99915 * 1 2 3 29 29 H 1.09003 * 109.49294 * 54.66096 * 4 2 1 30 30 H 1.08997 * 109.50161 * 174.75608 * 4 2 1 31 31 H 1.08996 * 109.47572 * 59.99680 * 8 7 5 32 32 H 1.09001 * 109.46954 * 180.02562 * 8 7 5 33 33 H 1.09005 * 109.47062 * 299.99608 * 8 7 5 34 34 H 1.09000 * 109.47162 * 59.99753 * 9 7 5 35 35 H 1.08998 * 109.47263 * 180.02562 * 9 7 5 36 36 H 1.09004 * 109.46723 * 299.99906 * 9 7 5 37 37 H 1.08996 * 109.47413 * 59.99954 * 10 7 5 38 38 H 1.09001 * 109.47496 * 180.02562 * 10 7 5 39 39 H 1.09000 * 109.47038 * 300.00369 * 10 7 5 40 40 H 1.08995 * 109.49643 * 181.31582 * 11 5 4 41 41 H 1.08996 * 109.49892 * 301.41776 * 11 5 4 42 42 H 1.09001 * 109.58145 * 65.15551 * 12 11 5 43 43 H 1.08998 * 109.58437 * 185.57393 * 12 11 5 44 44 H 1.09004 * 109.46922 * 300.00225 * 16 14 13 45 45 H 1.08997 * 109.46776 * 60.00082 * 16 14 13 46 46 H 1.08992 * 109.47158 * 300.00067 * 17 16 14 47 47 H 1.09006 * 109.47022 * 60.00441 * 17 16 14 48 48 H 0.97002 * 119.99720 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7279 -1.2463 5 6 1.6444 -2.2034 -1.1712 6 1 0.5598 -2.2830 -1.0991 7 6 2.1261 -2.9264 -2.4306 8 6 3.6486 -2.8143 -2.5323 9 6 1.7267 -4.4015 -2.3561 10 6 1.4841 -2.2864 -3.6631 11 6 2.2858 -2.8450 0.0614 12 6 1.7750 -2.1411 1.3226 13 7 2.0225 -0.6981 1.1954 14 6 2.6915 -0.0285 2.1549 15 8 2.8916 1.1619 2.0364 16 6 3.1908 -0.7587 3.3749 17 6 3.9111 0.2252 4.2989 18 6 4.4099 -0.5050 5.5193 19 1 4.2313 -1.5649 5.6249 20 6 5.0950 0.1799 6.5003 21 7 5.5308 -0.4575 7.5650 22 14 5.4045 2.0129 6.3173 23 1 4.2789 2.7680 6.9240 24 1 6.6699 2.3725 7.0060 25 1 5.5105 2.3556 4.8762 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.6056 -0.2774 -2.1370 30 1 3.1295 -0.6467 -1.2935 31 1 4.1060 -3.2703 -1.6543 32 1 3.9916 -3.3290 -3.4298 33 1 3.9327 -1.7633 -2.5856 34 1 0.6420 -4.4810 -2.2838 35 1 2.0702 -4.9167 -3.2531 36 1 2.1837 -4.8577 -1.4779 37 1 1.7682 -1.2355 -3.7164 38 1 1.8269 -2.8018 -4.5603 39 1 0.3995 -2.3663 -3.5906 40 1 2.0201 -3.9013 0.1015 41 1 3.3694 -2.7438 0.0020 42 1 0.7049 -2.3179 1.4316 43 1 2.3020 -2.5269 2.1952 44 1 2.3471 -1.2029 3.9031 45 1 3.8828 -1.5438 3.0704 46 1 4.7547 0.6689 3.7704 47 1 3.2193 1.0106 4.6034 48 1 6.0125 0.0244 8.2554 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360621717.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:29 Heat of formation + Delta-G solvation = -88.241985 kcal Electronic energy + Delta-G solvation = -23502.919737 eV Core-core repulsion = 20362.685074 eV Total energy + Delta-G solvation = -3140.234664 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.59828 -39.76929 -37.10531 -35.61261 -33.99236 -32.84008 -32.25236 -29.09882 -28.17135 -28.03144 -27.73196 -25.27627 -23.82147 -23.17674 -21.35499 -19.86270 -19.34970 -18.75522 -17.79505 -16.83548 -16.59065 -16.28048 -16.04908 -15.35567 -15.13373 -14.99450 -14.94347 -14.77540 -14.52043 -14.36665 -13.92731 -13.64677 -13.36288 -13.29524 -12.99799 -12.91809 -12.83711 -12.70492 -12.61302 -12.28556 -12.25704 -11.99117 -11.93611 -11.79531 -11.78402 -11.67732 -11.41386 -11.18628 -11.01294 -10.88530 -10.79319 -10.59492 -9.56730 -8.32872 -6.35535 1.31417 1.33235 1.48774 1.67020 2.06125 2.33749 3.02644 3.60688 3.72818 3.77858 3.90318 4.11755 4.15021 4.24236 4.31511 4.34121 4.36183 4.43893 4.50919 4.57079 4.59976 4.67851 4.80327 4.86883 4.88924 4.93274 4.96812 4.99288 5.05602 5.08123 5.11801 5.14616 5.19326 5.21402 5.25278 5.30946 5.31742 5.40038 5.41476 5.53112 5.59010 5.61860 5.69228 5.75659 6.22210 6.44860 6.70191 7.25361 7.29832 8.82778 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.027610 B = 0.003778 C = 0.003594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.898233 B = 7408.586419 C = 7788.611903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.128 3.872 3 H 0.065 0.935 4 C -0.117 4.117 5 C -0.069 4.069 6 H 0.086 0.914 7 C -0.060 4.060 8 C -0.147 4.147 9 C -0.142 4.142 10 C -0.142 4.142 11 C -0.130 4.130 12 C 0.097 3.903 13 N -0.604 5.604 14 C 0.511 3.489 15 O -0.591 6.591 16 C -0.113 4.113 17 C 0.007 3.993 18 C -0.528 4.528 19 H 0.051 0.949 20 C 0.015 3.985 21 N -0.942 5.942 22 Si 0.937 3.063 23 H -0.268 1.268 24 H -0.276 1.276 25 H -0.265 1.265 26 H 0.077 0.923 27 H 0.038 0.962 28 H 0.083 0.917 29 H 0.091 0.909 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.047 0.953 34 H 0.061 0.939 35 H 0.055 0.945 36 H 0.058 0.942 37 H 0.054 0.946 38 H 0.055 0.945 39 H 0.061 0.939 40 H 0.098 0.902 41 H 0.058 0.942 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.099 0.901 45 H 0.098 0.902 46 H 0.007 0.993 47 H 0.006 0.994 48 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.011 -7.943 -24.905 28.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.025 3.975 3 H 0.083 0.917 4 C -0.155 4.155 5 C -0.088 4.088 6 H 0.104 0.896 7 C -0.060 4.060 8 C -0.204 4.204 9 C -0.199 4.199 10 C -0.199 4.199 11 C -0.167 4.167 12 C -0.024 4.024 13 N -0.337 5.337 14 C 0.301 3.699 15 O -0.472 6.472 16 C -0.152 4.152 17 C -0.031 4.031 18 C -0.566 4.566 19 H 0.069 0.931 20 C -0.183 4.183 21 N -0.583 5.583 22 Si 0.761 3.239 23 H -0.193 1.193 24 H -0.201 1.201 25 H -0.189 1.189 26 H 0.096 0.904 27 H 0.058 0.942 28 H 0.101 0.899 29 H 0.109 0.891 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.116 0.884 41 H 0.077 0.923 42 H 0.104 0.896 43 H 0.106 0.894 44 H 0.117 0.883 45 H 0.116 0.884 46 H 0.025 0.975 47 H 0.025 0.975 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.820 -7.313 -24.815 28.442 hybrid contribution 0.609 0.958 0.588 1.279 sum -11.210 -6.355 -24.227 27.441 Atomic orbital electron populations 1.22071 0.93384 1.03245 1.02220 1.21259 0.95294 0.96356 0.84621 0.91713 1.22021 1.00714 0.96285 0.96436 1.21161 1.00710 0.93067 0.93834 0.89559 1.20497 0.95043 0.95840 0.94600 1.21992 0.95523 1.01332 1.01571 1.21916 1.01646 0.94410 1.01938 1.21916 1.00792 1.00523 0.96710 1.22096 1.00684 1.00603 0.93362 1.22026 1.02295 0.78141 0.99964 1.48324 1.55161 1.10187 1.19999 1.21233 0.76739 0.87066 0.84833 1.90609 1.59218 1.17614 1.79778 1.21485 1.01578 0.99355 0.92804 1.19210 0.95205 0.94964 0.93723 1.21404 1.35220 0.96418 1.03530 0.93054 1.25774 0.95025 1.02694 0.94764 1.70021 1.39737 1.38205 1.10300 0.85851 0.78208 0.80855 0.78937 1.19332 1.20130 1.18901 0.90428 0.94236 0.89862 0.89115 0.92931 0.92920 0.92501 0.93378 0.91995 0.92636 0.92269 0.92674 0.92580 0.91983 0.88369 0.92347 0.89560 0.89422 0.88251 0.88397 0.97476 0.97526 0.92332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 9.03 71.98 0.65 -2.15 16 2 C 0.13 3.05 3.20 44.97 0.14 3.20 16 3 H 0.06 1.97 7.01 -2.39 -0.02 1.96 16 4 C -0.12 -2.11 4.12 30.67 0.13 -1.98 16 5 C -0.07 -0.97 1.31 -10.77 -0.01 -0.99 16 6 H 0.09 1.05 6.50 -2.39 -0.02 1.03 16 7 C -0.06 -0.73 0.57 -52.18 -0.03 -0.76 16 8 C -0.15 -2.16 7.77 71.98 0.56 -1.60 16 9 C -0.14 -1.49 8.12 71.98 0.58 -0.91 16 10 C -0.14 -1.55 8.12 71.98 0.58 -0.96 16 11 C -0.13 -2.07 4.65 30.67 0.14 -1.93 16 12 C 0.10 1.96 5.93 86.36 0.51 2.47 16 13 N -0.60 -16.76 2.69 -794.93 -2.13 -18.89 16 14 C 0.51 19.55 7.70 87.66 0.67 20.22 16 15 O -0.59 -27.74 15.40 -3.05 -0.05 -27.78 16 16 C -0.11 -4.50 3.99 29.85 0.12 -4.38 16 17 C 0.01 0.36 3.33 29.85 0.10 0.46 16 18 C -0.53 -31.02 9.66 25.60 0.25 -30.77 16 19 H 0.05 3.15 7.99 -2.91 -0.02 3.13 16 20 C 0.02 0.92 5.47 84.65 0.46 1.38 16 21 N -0.94 -59.50 13.96 21.45 0.30 -59.20 16 22 Si 0.94 47.68 27.47 68.60 1.88 49.57 16 23 H -0.27 -13.20 7.11 99.48 0.71 -12.49 16 24 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 25 H -0.26 -13.52 6.54 99.48 0.65 -12.87 16 26 H 0.08 1.15 5.74 -2.39 -0.01 1.14 16 27 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.09 1.34 6.36 -2.39 -0.02 1.32 16 30 H 0.05 1.14 6.51 -2.39 -0.02 1.13 16 31 H 0.05 0.84 6.46 -2.39 -0.02 0.83 16 32 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.05 0.79 6.46 -2.38 -0.02 0.78 16 34 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.06 0.63 6.40 -2.38 -0.02 0.62 16 37 H 0.05 0.64 6.40 -2.39 -0.02 0.62 16 38 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.10 1.19 6.36 -2.39 -0.02 1.18 16 41 H 0.06 1.12 6.51 -2.39 -0.02 1.11 16 42 H 0.09 1.41 7.50 -2.39 -0.02 1.39 16 43 H 0.09 1.86 5.94 -2.39 -0.01 1.85 16 44 H 0.10 3.63 7.95 -2.38 -0.02 3.61 16 45 H 0.10 3.60 7.69 -2.39 -0.02 3.59 16 46 H 0.01 0.37 7.16 -2.39 -0.02 0.36 16 47 H 0.01 0.34 7.53 -2.38 -0.02 0.32 16 48 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 Total: -1.00 -72.80 350.99 5.73 -67.08 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: 0.86 Total: 7.92 kcal Atomic # 6 Polarization: -23.55 SS G_CDS: 4.86 Total: -18.69 kcal Atomic # 7 Polarization: -76.25 SS G_CDS: -1.84 Total: -78.09 kcal Atomic # 8 Polarization: -27.74 SS G_CDS: -0.05 Total: -27.78 kcal Atomic # 14 Polarization: 47.68 SS G_CDS: 1.88 Total: 49.57 kcal Total: -72.80 5.73 -67.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360621717.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.164 kcal (2) G-P(sol) polarization free energy of solvation -72.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds