Wall clock time and date at job start Tue Mar 31 2020 05:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.69895 * 2 1 4 4 C 1.52755 * 109.43196 * 120.17089 * 2 1 3 5 5 C 1.53035 * 109.38924 * 65.42182 * 4 2 1 6 6 H 1.09005 * 109.46064 * 301.22095 * 5 4 2 7 7 C 1.52995 * 109.46332 * 181.26279 * 5 4 2 8 8 C 1.53004 * 109.47188 * 299.92957 * 7 5 4 9 9 C 1.52996 * 109.47284 * 59.93158 * 7 5 4 10 10 C 1.53006 * 109.47225 * 179.97438 * 7 5 4 11 11 C 1.53044 * 109.53745 * 61.23716 * 5 4 2 12 12 C 1.53190 * 109.31247 * 298.63925 * 11 5 4 13 13 N 1.46923 * 108.77666 * 54.63326 * 12 11 5 14 14 C 1.34784 * 120.63216 * 126.36791 * 13 12 11 15 15 O 1.21274 * 119.99897 * 179.72777 * 14 13 12 16 16 C 1.50695 * 119.99635 * 359.97438 * 14 13 12 17 17 C 1.53002 * 109.47004 * 179.97438 * 16 14 13 18 18 C 1.50700 * 109.47331 * 180.02562 * 17 16 14 19 19 H 1.07999 * 119.99988 * 359.97438 * 18 17 16 20 20 C 1.37875 * 120.00042 * 180.02562 * 18 17 16 21 21 N 1.31514 * 120.00041 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00004 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47274 * 90.00144 * 22 20 18 24 24 H 1.48504 * 109.47383 * 209.99816 * 22 20 18 25 25 H 1.48502 * 109.47297 * 329.99779 * 22 20 18 26 26 H 1.09003 * 109.47591 * 180.35434 * 1 2 3 27 27 H 1.09001 * 109.47365 * 300.34886 * 1 2 3 28 28 H 1.09001 * 109.47344 * 60.35059 * 1 2 3 29 29 H 1.09008 * 109.56349 * 305.38763 * 4 2 1 30 30 H 1.09004 * 109.38523 * 185.35335 * 4 2 1 31 31 H 1.09002 * 109.46528 * 60.00103 * 8 7 5 32 32 H 1.08997 * 109.47589 * 180.02562 * 8 7 5 33 33 H 1.08999 * 109.47230 * 300.00694 * 8 7 5 34 34 H 1.08994 * 109.47028 * 60.00381 * 9 7 5 35 35 H 1.09004 * 109.47009 * 179.97438 * 9 7 5 36 36 H 1.08995 * 109.46913 * 299.99842 * 9 7 5 37 37 H 1.08993 * 109.47437 * 59.99480 * 10 7 5 38 38 H 1.08997 * 109.47215 * 180.02562 * 10 7 5 39 39 H 1.09003 * 109.46448 * 299.99547 * 10 7 5 40 40 H 1.09000 * 109.49951 * 178.68518 * 11 5 4 41 41 H 1.09005 * 109.49454 * 58.59153 * 11 5 4 42 42 H 1.08997 * 109.59125 * 294.84367 * 12 11 5 43 43 H 1.08999 * 109.58528 * 174.41846 * 12 11 5 44 44 H 1.09005 * 109.47403 * 300.00056 * 16 14 13 45 45 H 1.09002 * 109.47422 * 60.00295 * 16 14 13 46 46 H 1.08997 * 109.47244 * 300.00535 * 17 16 14 47 47 H 1.09002 * 109.46787 * 59.99910 * 17 16 14 48 48 H 0.97000 * 120.00297 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0382 -0.7240 1.2454 5 6 1.6410 -2.2001 1.1725 6 1 0.5564 -2.2812 1.0995 7 6 2.1218 -2.9203 2.4338 8 6 3.6442 -2.8076 2.5365 9 6 1.4788 -2.2777 3.6645 10 6 1.7242 -4.3960 2.3615 11 6 2.2843 -2.8431 -0.0583 12 6 1.7739 -2.1420 -1.3212 13 7 2.0224 -0.6995 -1.1945 14 6 2.6943 -0.0316 -2.1533 15 8 2.8887 1.1600 -2.0393 16 6 3.1991 -0.7646 -3.3693 17 6 3.9207 0.2179 -4.2939 18 6 4.4250 -0.5149 -5.5104 19 1 4.2488 -1.5754 -5.6135 20 6 5.1122 0.1683 -6.4912 21 7 5.3272 1.4597 -6.3653 22 14 5.7366 -0.7399 -7.9993 23 1 4.6962 -0.7144 -9.0586 24 1 6.9689 -0.0795 -8.5000 25 1 6.0413 -2.1478 -7.6384 26 1 -0.3634 -1.0276 0.0064 27 1 -0.3634 0.5192 0.8868 28 1 -0.3634 0.5084 -0.8931 29 1 1.5987 -0.2725 2.1349 30 1 3.1240 -0.6414 1.2941 31 1 3.9281 -1.7565 2.5877 32 1 3.9869 -3.3211 3.4348 33 1 4.1023 -3.2653 1.6597 34 1 0.3942 -2.3580 3.5914 35 1 1.8210 -2.7911 4.5631 36 1 1.7627 -1.2266 3.7157 37 1 2.1828 -4.8533 1.4849 38 1 2.0663 -4.9090 3.2603 39 1 0.6396 -4.4768 2.2881 40 1 2.0200 -3.8998 -0.0968 41 1 3.3678 -2.7405 0.0021 42 1 0.7043 -2.3202 -1.4312 43 1 2.3024 -2.5287 -2.1926 44 1 3.8909 -1.5482 -3.0602 45 1 2.3580 -1.2110 -3.8997 46 1 3.2287 1.0012 -4.6030 47 1 4.7619 0.6647 -3.7638 48 1 5.8104 1.9404 -7.0555 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360621721.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:33 Heat of formation + Delta-G solvation = -71.693329 kcal Electronic energy + Delta-G solvation = -23445.575176 eV Core-core repulsion = 20306.058116 eV Total energy + Delta-G solvation = -3139.517060 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.48433 -38.52958 -35.98719 -33.55393 -32.62994 -31.33517 -30.60844 -28.26252 -27.52625 -27.00509 -25.77552 -24.30751 -22.69853 -21.90191 -20.01890 -18.88368 -17.87975 -16.97956 -15.95493 -15.63093 -15.20408 -14.95906 -14.55066 -14.37799 -14.27083 -14.18192 -13.87911 -13.25236 -13.14850 -12.94235 -12.54260 -12.25041 -12.15128 -12.10269 -12.00804 -11.95647 -11.90310 -11.48031 -11.33323 -11.10190 -11.07148 -10.91447 -10.86140 -10.56689 -10.43981 -10.24130 -10.05330 -9.92256 -9.56049 -9.12348 -8.90530 -8.33808 -8.26212 -5.93612 -3.97901 3.29440 3.34502 3.34808 3.41003 3.43715 4.45055 4.48750 4.50182 4.53434 4.83308 4.98766 5.06957 5.09595 5.18970 5.29925 5.37420 5.39224 5.41210 5.44119 5.48135 5.51090 5.56847 5.62623 5.66713 5.72573 5.76755 5.77151 5.84834 5.85316 5.92159 5.98719 6.06441 6.10952 6.11176 6.22968 6.24788 6.26988 6.31380 6.46233 6.86006 6.99298 7.77217 7.86478 7.90042 8.10402 8.41727 8.83094 9.10831 9.65416 11.17374 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.026565 B = 0.003624 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.767024 B = 7724.446021 C = 8223.714916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.134 3.866 3 H 0.096 0.904 4 C -0.125 4.125 5 C -0.075 4.075 6 H 0.072 0.928 7 C -0.064 4.064 8 C -0.146 4.146 9 C -0.143 4.143 10 C -0.143 4.143 11 C -0.134 4.134 12 C 0.108 3.892 13 N -0.618 5.618 14 C 0.513 3.487 15 O -0.536 6.536 16 C -0.128 4.128 17 C 0.037 3.963 18 C -0.526 4.526 19 H 0.055 0.945 20 C 0.058 3.942 21 N -0.890 5.890 22 Si 0.892 3.108 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.274 1.274 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.050 0.950 33 H 0.059 0.941 34 H 0.053 0.947 35 H 0.051 0.949 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.051 0.949 39 H 0.052 0.948 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.062 0.938 43 H 0.090 0.910 44 H 0.078 0.922 45 H 0.078 0.922 46 H 0.023 0.977 47 H 0.023 0.977 48 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.834 -11.329 19.878 24.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.031 3.969 3 H 0.114 0.886 4 C -0.163 4.163 5 C -0.093 4.093 6 H 0.091 0.909 7 C -0.064 4.064 8 C -0.203 4.203 9 C -0.200 4.200 10 C -0.200 4.200 11 C -0.172 4.172 12 C -0.015 4.015 13 N -0.354 5.354 14 C 0.303 3.697 15 O -0.412 6.412 16 C -0.168 4.168 17 C 0.000 4.000 18 C -0.564 4.564 19 H 0.073 0.927 20 C -0.144 4.144 21 N -0.528 5.528 22 Si 0.720 3.280 23 H -0.207 1.207 24 H -0.212 1.212 25 H -0.199 1.199 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.080 0.920 43 H 0.108 0.892 44 H 0.096 0.904 45 H 0.096 0.904 46 H 0.041 0.959 47 H 0.041 0.959 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.629 -10.513 19.829 24.422 hybrid contribution 0.313 -0.544 -0.816 1.030 sum -9.316 -11.056 19.013 23.886 Atomic orbital electron populations 1.22132 0.95674 1.01913 1.02015 1.20958 0.93617 0.97753 0.84576 0.88612 1.22007 1.01769 0.95183 0.97365 1.21175 1.00050 0.94453 0.93654 0.90935 1.20541 0.95734 0.95232 0.94915 1.21987 0.94758 1.02029 1.01551 1.21921 1.00320 1.00803 0.96958 1.21927 1.01110 0.95276 1.01705 1.22112 1.01457 0.99430 0.94209 1.21671 1.00613 0.80530 0.98734 1.48345 1.57363 1.08726 1.20947 1.21547 0.76195 0.87846 0.84085 1.90646 1.56639 1.15604 1.78312 1.21868 1.00858 1.00789 0.93262 1.18899 0.95475 0.93325 0.92327 1.21222 1.35761 0.94986 1.04455 0.92658 1.25024 0.96176 0.94841 0.98354 1.70000 1.41120 1.07477 1.34252 0.86599 0.78357 0.79808 0.83227 1.20688 1.21241 1.19890 0.92377 0.92025 0.92420 0.90934 0.91289 0.92338 0.93125 0.92245 0.92837 0.92989 0.92305 0.92219 0.92985 0.92843 0.90740 0.91041 0.91984 0.89165 0.90404 0.90414 0.95888 0.95897 0.92979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.76 9.02 37.16 0.34 -1.42 16 2 C 0.13 1.78 3.19 -67.82 -0.22 1.56 16 3 H 0.10 1.52 7.01 -51.93 -0.36 1.15 16 4 C -0.13 -1.31 4.09 -26.84 -0.11 -1.42 16 5 C -0.07 -0.66 1.30 -90.58 -0.12 -0.78 16 6 H 0.07 0.63 6.49 -51.93 -0.34 0.29 16 7 C -0.06 -0.50 0.57 -154.51 -0.09 -0.59 16 8 C -0.15 -1.23 7.77 37.16 0.29 -0.95 16 9 C -0.14 -1.03 8.12 37.16 0.30 -0.73 16 10 C -0.14 -1.01 8.12 37.16 0.30 -0.71 16 11 C -0.13 -1.29 4.65 -26.61 -0.12 -1.42 16 12 C 0.11 1.26 5.93 -3.71 -0.02 1.24 16 13 N -0.62 -9.32 2.68 -165.48 -0.44 -9.76 16 14 C 0.51 10.32 7.70 -10.98 -0.08 10.24 16 15 O -0.54 -13.06 15.40 5.56 0.09 -12.97 16 16 C -0.13 -2.68 3.99 -27.88 -0.11 -2.79 16 17 C 0.04 1.02 4.26 -27.88 -0.12 0.90 16 18 C -0.53 -15.09 9.11 -34.44 -0.31 -15.41 16 19 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 20 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 21 N -0.89 -27.73 13.29 55.43 0.74 -26.99 16 22 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 25 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 26 H 0.06 0.57 5.74 -51.93 -0.30 0.27 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.07 0.66 6.36 -51.92 -0.33 0.33 16 30 H 0.07 0.81 6.51 -51.93 -0.34 0.48 16 31 H 0.06 0.53 6.46 -51.93 -0.34 0.20 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.53 6.46 -51.93 -0.34 0.19 16 34 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.06 0.44 6.40 -51.93 -0.33 0.10 16 37 H 0.06 0.42 6.40 -51.93 -0.33 0.09 16 38 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.07 0.60 6.36 -51.93 -0.33 0.27 16 41 H 0.07 0.77 6.51 -51.93 -0.34 0.43 16 42 H 0.06 0.65 7.52 -51.93 -0.39 0.26 16 43 H 0.09 1.08 5.93 -51.93 -0.31 0.77 16 44 H 0.08 1.50 7.69 -51.93 -0.40 1.10 16 45 H 0.08 1.50 7.94 -51.93 -0.41 1.08 16 46 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 47 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 48 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 354.53 15.07 5.34 5.34 Total: -1.00 -33.18 354.53 -8.00 -41.18 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -8.52 Total: -2.92 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: -0.18 Total: -10.68 kcal Atomic # 7 Polarization: -37.05 SS G_CDS: 0.29 Total: -36.76 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: 0.09 Total: -12.97 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.18 -8.00 -41.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360621721.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.510 kcal (2) G-P(sol) polarization free energy of solvation -33.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds