Wall clock time and date at job start Tue Mar 31 2020 05:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.69895 * 2 1 4 4 C 1.52755 * 109.43196 * 120.17089 * 2 1 3 5 5 C 1.53035 * 109.38924 * 65.42182 * 4 2 1 6 6 H 1.09005 * 109.46064 * 301.22095 * 5 4 2 7 7 C 1.52995 * 109.46332 * 181.26279 * 5 4 2 8 8 C 1.53004 * 109.47188 * 299.92957 * 7 5 4 9 9 C 1.52996 * 109.47284 * 59.93158 * 7 5 4 10 10 C 1.53006 * 109.47225 * 179.97438 * 7 5 4 11 11 C 1.53044 * 109.53745 * 61.23716 * 5 4 2 12 12 C 1.53190 * 109.31247 * 298.63925 * 11 5 4 13 13 N 1.46923 * 108.77666 * 54.63326 * 12 11 5 14 14 C 1.34784 * 120.63216 * 126.36791 * 13 12 11 15 15 O 1.21274 * 119.99897 * 179.72777 * 14 13 12 16 16 C 1.50695 * 119.99635 * 359.97438 * 14 13 12 17 17 C 1.53002 * 109.47004 * 179.97438 * 16 14 13 18 18 C 1.50700 * 109.47331 * 180.02562 * 17 16 14 19 19 H 1.07999 * 119.99988 * 359.97438 * 18 17 16 20 20 C 1.37875 * 120.00042 * 180.02562 * 18 17 16 21 21 N 1.31514 * 120.00041 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00004 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47274 * 90.00144 * 22 20 18 24 24 H 1.48504 * 109.47383 * 209.99816 * 22 20 18 25 25 H 1.48502 * 109.47297 * 329.99779 * 22 20 18 26 26 H 1.09003 * 109.47591 * 180.35434 * 1 2 3 27 27 H 1.09001 * 109.47365 * 300.34886 * 1 2 3 28 28 H 1.09001 * 109.47344 * 60.35059 * 1 2 3 29 29 H 1.09008 * 109.56349 * 305.38763 * 4 2 1 30 30 H 1.09004 * 109.38523 * 185.35335 * 4 2 1 31 31 H 1.09002 * 109.46528 * 60.00103 * 8 7 5 32 32 H 1.08997 * 109.47589 * 180.02562 * 8 7 5 33 33 H 1.08999 * 109.47230 * 300.00694 * 8 7 5 34 34 H 1.08994 * 109.47028 * 60.00381 * 9 7 5 35 35 H 1.09004 * 109.47009 * 179.97438 * 9 7 5 36 36 H 1.08995 * 109.46913 * 299.99842 * 9 7 5 37 37 H 1.08993 * 109.47437 * 59.99480 * 10 7 5 38 38 H 1.08997 * 109.47215 * 180.02562 * 10 7 5 39 39 H 1.09003 * 109.46448 * 299.99547 * 10 7 5 40 40 H 1.09000 * 109.49951 * 178.68518 * 11 5 4 41 41 H 1.09005 * 109.49454 * 58.59153 * 11 5 4 42 42 H 1.08997 * 109.59125 * 294.84367 * 12 11 5 43 43 H 1.08999 * 109.58528 * 174.41846 * 12 11 5 44 44 H 1.09005 * 109.47403 * 300.00056 * 16 14 13 45 45 H 1.09002 * 109.47422 * 60.00295 * 16 14 13 46 46 H 1.08997 * 109.47244 * 300.00535 * 17 16 14 47 47 H 1.09002 * 109.46787 * 59.99910 * 17 16 14 48 48 H 0.97000 * 120.00297 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0382 -0.7240 1.2454 5 6 1.6410 -2.2001 1.1725 6 1 0.5564 -2.2812 1.0995 7 6 2.1218 -2.9203 2.4338 8 6 3.6442 -2.8076 2.5365 9 6 1.4788 -2.2777 3.6645 10 6 1.7242 -4.3960 2.3615 11 6 2.2843 -2.8431 -0.0583 12 6 1.7739 -2.1420 -1.3212 13 7 2.0224 -0.6995 -1.1945 14 6 2.6943 -0.0316 -2.1533 15 8 2.8887 1.1600 -2.0393 16 6 3.1991 -0.7646 -3.3693 17 6 3.9207 0.2179 -4.2939 18 6 4.4250 -0.5149 -5.5104 19 1 4.2488 -1.5754 -5.6135 20 6 5.1122 0.1683 -6.4912 21 7 5.3272 1.4597 -6.3653 22 14 5.7366 -0.7399 -7.9993 23 1 4.6962 -0.7144 -9.0586 24 1 6.9689 -0.0795 -8.5000 25 1 6.0413 -2.1478 -7.6384 26 1 -0.3634 -1.0276 0.0064 27 1 -0.3634 0.5192 0.8868 28 1 -0.3634 0.5084 -0.8931 29 1 1.5987 -0.2725 2.1349 30 1 3.1240 -0.6414 1.2941 31 1 3.9281 -1.7565 2.5877 32 1 3.9869 -3.3211 3.4348 33 1 4.1023 -3.2653 1.6597 34 1 0.3942 -2.3580 3.5914 35 1 1.8210 -2.7911 4.5631 36 1 1.7627 -1.2266 3.7157 37 1 2.1828 -4.8533 1.4849 38 1 2.0663 -4.9090 3.2603 39 1 0.6396 -4.4768 2.2881 40 1 2.0200 -3.8998 -0.0968 41 1 3.3678 -2.7405 0.0021 42 1 0.7043 -2.3202 -1.4312 43 1 2.3024 -2.5287 -2.1926 44 1 3.8909 -1.5482 -3.0602 45 1 2.3580 -1.2110 -3.8997 46 1 3.2287 1.0012 -4.6030 47 1 4.7619 0.6647 -3.7638 48 1 5.8104 1.9404 -7.0555 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360621721.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:32 Heat of formation + Delta-G solvation = -90.997348 kcal Electronic energy + Delta-G solvation = -23446.412261 eV Core-core repulsion = 20306.058116 eV Total energy + Delta-G solvation = -3140.354145 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.59418 -39.75203 -37.09675 -35.62242 -33.95756 -32.58669 -32.18795 -29.06625 -28.15749 -27.79171 -27.69499 -25.30958 -24.07298 -23.28553 -21.38042 -19.84294 -19.12972 -18.60468 -17.65027 -16.82998 -16.56767 -16.43192 -16.06148 -15.33799 -15.09630 -14.96586 -14.94598 -14.49815 -14.39133 -14.26060 -13.89992 -13.57712 -13.30788 -13.17708 -12.99284 -12.83621 -12.81640 -12.69809 -12.60548 -12.46915 -12.27302 -12.14335 -11.94857 -11.78533 -11.67514 -11.57851 -11.31069 -11.17851 -10.99558 -10.88217 -10.57617 -10.56624 -9.55170 -8.18349 -6.32935 1.41597 1.44838 1.55761 1.70583 2.07866 2.43118 3.14391 3.63251 3.73456 3.78462 3.93868 4.12367 4.16605 4.24750 4.32223 4.37163 4.44459 4.49801 4.51253 4.58363 4.60279 4.67881 4.81278 4.87137 4.89862 4.93952 4.98881 5.02131 5.07057 5.08374 5.11807 5.15762 5.19963 5.22646 5.25644 5.32195 5.40397 5.47363 5.53595 5.60713 5.62843 5.69699 5.77051 5.84451 6.16627 6.47175 6.85375 7.30005 7.37565 8.94533 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.026565 B = 0.003624 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.767024 B = 7724.446021 C = 8223.714916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.127 3.873 3 H 0.059 0.941 4 C -0.117 4.117 5 C -0.069 4.069 6 H 0.087 0.913 7 C -0.060 4.060 8 C -0.147 4.147 9 C -0.142 4.142 10 C -0.141 4.141 11 C -0.129 4.129 12 C 0.098 3.902 13 N -0.604 5.604 14 C 0.508 3.492 15 O -0.595 6.595 16 C -0.114 4.114 17 C 0.044 3.956 18 C -0.542 4.542 19 H 0.076 0.924 20 C -0.008 4.008 21 N -0.939 5.939 22 Si 0.976 3.024 23 H -0.271 1.271 24 H -0.286 1.286 25 H -0.254 1.254 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.036 0.964 29 H 0.090 0.910 30 H 0.050 0.950 31 H 0.045 0.955 32 H 0.057 0.943 33 H 0.052 0.948 34 H 0.062 0.938 35 H 0.056 0.944 36 H 0.053 0.947 37 H 0.060 0.940 38 H 0.055 0.945 39 H 0.061 0.939 40 H 0.101 0.899 41 H 0.057 0.943 42 H 0.087 0.913 43 H 0.090 0.910 44 H 0.100 0.900 45 H 0.101 0.899 46 H -0.020 1.020 47 H -0.021 1.021 48 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.228 -14.893 20.566 27.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.024 3.976 3 H 0.078 0.922 4 C -0.155 4.155 5 C -0.088 4.088 6 H 0.105 0.895 7 C -0.060 4.060 8 C -0.204 4.204 9 C -0.200 4.200 10 C -0.198 4.198 11 C -0.167 4.167 12 C -0.024 4.024 13 N -0.338 5.338 14 C 0.298 3.702 15 O -0.476 6.476 16 C -0.154 4.154 17 C 0.007 3.993 18 C -0.580 4.580 19 H 0.095 0.905 20 C -0.205 4.205 21 N -0.579 5.579 22 Si 0.799 3.201 23 H -0.196 1.196 24 H -0.212 1.212 25 H -0.178 1.178 26 H 0.098 0.902 27 H 0.101 0.899 28 H 0.056 0.944 29 H 0.109 0.891 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.119 0.881 41 H 0.076 0.924 42 H 0.105 0.895 43 H 0.108 0.892 44 H 0.118 0.882 45 H 0.119 0.881 46 H -0.002 1.002 47 H -0.002 1.002 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.060 -14.144 20.562 27.298 hybrid contribution 0.729 0.586 -0.945 1.329 sum -10.331 -13.558 19.618 25.989 Atomic orbital electron populations 1.22072 0.93324 1.03332 1.02115 1.21152 0.95374 0.96220 0.84854 0.92244 1.21945 1.00648 0.96516 0.96344 1.21166 1.00760 0.92881 0.93969 0.89478 1.20497 0.95002 0.95932 0.94522 1.21995 0.95581 1.01240 1.01616 1.21916 1.00816 1.00461 0.96770 1.21910 1.01684 0.94256 1.01985 1.22101 1.00626 1.00676 0.93293 1.22036 1.02317 0.78001 1.00049 1.48337 1.55111 1.10301 1.20006 1.21381 0.76753 0.87127 0.84939 1.90622 1.59342 1.17952 1.79637 1.21615 1.01478 0.99432 0.92865 1.18675 0.93594 0.93654 0.93415 1.21697 1.35591 0.96020 1.04709 0.90550 1.26169 0.96291 0.95669 1.02393 1.70188 1.42155 1.09761 1.35754 0.85293 0.77577 0.78971 0.78231 1.19630 1.21179 1.17769 0.90173 0.89884 0.94434 0.89145 0.93129 0.93574 0.92435 0.92856 0.91939 0.92526 0.92816 0.92151 0.92608 0.91963 0.88114 0.92423 0.89511 0.89207 0.88232 0.88098 1.00180 1.00246 0.92852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.06 9.02 71.98 0.65 -2.41 16 2 C 0.13 3.33 3.19 44.83 0.14 3.48 16 3 H 0.06 2.01 7.01 -2.39 -0.02 1.99 16 4 C -0.12 -2.30 4.09 30.52 0.12 -2.17 16 5 C -0.07 -1.03 1.30 -10.77 -0.01 -1.04 16 6 H 0.09 1.11 6.49 -2.38 -0.02 1.10 16 7 C -0.06 -0.76 0.57 -52.18 -0.03 -0.79 16 8 C -0.15 -2.26 7.77 71.98 0.56 -1.70 16 9 C -0.14 -1.64 8.12 71.98 0.58 -1.06 16 10 C -0.14 -1.49 8.12 71.98 0.58 -0.90 16 11 C -0.13 -2.12 4.65 30.67 0.14 -1.98 16 12 C 0.10 2.04 5.93 86.36 0.51 2.55 16 13 N -0.60 -18.08 2.68 -795.85 -2.14 -20.21 16 14 C 0.51 21.25 7.70 87.65 0.67 21.92 16 15 O -0.59 -31.19 15.40 -3.01 -0.05 -31.24 16 16 C -0.11 -4.86 3.99 29.85 0.12 -4.74 16 17 C 0.04 2.56 4.26 29.85 0.13 2.69 16 18 C -0.54 -31.52 9.11 25.60 0.23 -31.29 16 19 H 0.08 4.02 7.74 -2.91 -0.02 4.00 16 20 C -0.01 -0.47 5.46 84.65 0.46 -0.01 16 21 N -0.94 -60.68 13.29 21.45 0.28 -60.39 16 22 Si 0.98 44.82 29.54 68.60 2.03 46.84 16 23 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 24 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 25 H -0.25 -10.77 7.11 99.48 0.71 -10.07 16 26 H 0.08 1.28 5.74 -2.39 -0.01 1.26 16 27 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.09 1.48 6.36 -2.38 -0.02 1.46 16 30 H 0.05 1.20 6.51 -2.39 -0.02 1.18 16 31 H 0.05 0.81 6.46 -2.39 -0.02 0.80 16 32 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.05 0.88 6.46 -2.39 -0.02 0.86 16 34 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 36 H 0.05 0.67 6.40 -2.39 -0.02 0.66 16 37 H 0.06 0.63 6.40 -2.39 -0.02 0.62 16 38 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 40 H 0.10 1.20 6.36 -2.39 -0.02 1.19 16 41 H 0.06 1.14 6.51 -2.38 -0.02 1.13 16 42 H 0.09 1.46 7.52 -2.39 -0.02 1.44 16 43 H 0.09 1.91 5.93 -2.39 -0.01 1.90 16 44 H 0.10 3.77 7.69 -2.38 -0.02 3.75 16 45 H 0.10 3.79 7.94 -2.39 -0.02 3.77 16 46 H -0.02 -1.32 8.10 -2.39 -0.02 -1.34 16 47 H -0.02 -1.37 8.10 -2.39 -0.02 -1.39 16 48 H 0.26 15.87 8.31 -92.71 -0.77 15.09 16 Total: -1.00 -77.24 354.53 5.92 -71.32 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: 0.92 Total: 11.14 kcal Atomic # 6 Polarization: -22.33 SS G_CDS: 4.87 Total: -17.46 kcal Atomic # 7 Polarization: -78.75 SS G_CDS: -1.85 Total: -80.61 kcal Atomic # 8 Polarization: -31.19 SS G_CDS: -0.05 Total: -31.24 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Total: -77.24 5.92 -71.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360621721.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.678 kcal (2) G-P(sol) polarization free energy of solvation -77.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds