Wall clock time and date at job start Tue Mar 31 2020 05:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 109.70522 * 2 1 4 4 C 1.53197 * 109.58287 * 120.35229 * 2 1 3 5 5 C 1.53043 * 109.31226 * 174.41829 * 4 2 1 6 6 H 1.09003 * 109.45778 * 58.65544 * 5 4 2 7 7 C 1.52997 * 109.45776 * 178.61177 * 5 4 2 8 8 C 1.53006 * 109.46862 * 180.02562 * 7 5 4 9 9 C 1.52997 * 109.47625 * 300.06905 * 7 5 4 10 10 C 1.52994 * 109.47218 * 60.07481 * 7 5 4 11 11 C 1.53040 * 109.54139 * 298.63794 * 5 4 2 12 12 C 1.53192 * 109.31196 * 61.36187 * 11 5 4 13 13 N 1.46924 * 109.58836 * 239.63766 * 2 1 3 14 14 C 1.34788 * 120.62950 * 6.58785 * 13 2 1 15 15 O 1.21274 * 119.99794 * 354.96847 * 14 13 2 16 16 C 1.50693 * 119.99821 * 174.97189 * 14 13 2 17 17 C 1.53001 * 109.47132 * 180.02562 * 16 14 13 18 18 C 1.50693 * 109.47132 * 180.02562 * 17 16 14 19 19 H 1.07998 * 120.00673 * 359.97438 * 18 17 16 20 20 C 1.37885 * 119.99901 * 179.97438 * 18 17 16 21 21 N 1.31520 * 119.99918 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00054 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47071 * 90.00563 * 22 20 18 24 24 H 1.48498 * 109.47187 * 210.00141 * 22 20 18 25 25 H 1.48495 * 109.47515 * 330.00502 * 22 20 18 26 26 H 1.08999 * 109.47738 * 176.01750 * 1 2 3 27 27 H 1.08994 * 109.47224 * 296.02332 * 1 2 3 28 28 H 1.09000 * 109.46755 * 56.01955 * 1 2 3 29 29 H 1.08997 * 109.49545 * 294.37345 * 4 2 1 30 30 H 1.08997 * 109.49996 * 54.43816 * 4 2 1 31 31 H 1.09002 * 109.46624 * 60.00361 * 8 7 5 32 32 H 1.08996 * 109.47254 * 180.02562 * 8 7 5 33 33 H 1.08999 * 109.47491 * 300.00697 * 8 7 5 34 34 H 1.09009 * 109.46652 * 59.99942 * 9 7 5 35 35 H 1.08994 * 109.47345 * 179.97438 * 9 7 5 36 36 H 1.08998 * 109.46958 * 300.00465 * 9 7 5 37 37 H 1.09009 * 109.47230 * 59.99331 * 10 7 5 38 38 H 1.08994 * 109.47772 * 179.97438 * 10 7 5 39 39 H 1.09002 * 109.47412 * 299.99846 * 10 7 5 40 40 H 1.09001 * 109.49241 * 301.41328 * 11 5 4 41 41 H 1.08997 * 109.49804 * 181.31749 * 11 5 4 42 42 H 1.08993 * 109.58868 * 65.15494 * 12 11 5 43 43 H 1.09002 * 109.58765 * 185.43841 * 12 11 5 44 44 H 1.09003 * 109.47373 * 299.99923 * 16 14 13 45 45 H 1.08995 * 109.47620 * 59.99753 * 16 14 13 46 46 H 1.09003 * 109.46810 * 300.00122 * 17 16 14 47 47 H 1.08995 * 109.47189 * 59.99343 * 17 16 14 48 48 H 0.96991 * 119.99686 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0434 -0.7293 1.2455 5 6 3.5674 -0.8481 1.1703 6 1 4.0061 0.1473 1.0994 7 6 4.0870 -1.5454 2.4291 8 6 5.6107 -1.6636 2.3544 9 6 3.6979 -0.7280 3.6625 10 6 3.4723 -2.9428 2.5286 11 6 3.9569 -1.6659 -0.0633 12 6 3.4650 -0.9471 -1.3236 13 7 2.0225 -0.6997 -1.1944 14 6 1.1673 -1.1071 -2.1532 15 8 -0.0281 -0.9794 -1.9935 16 6 1.6965 -1.7214 -3.4234 17 6 0.5263 -2.0928 -4.3364 18 6 1.0556 -2.7076 -5.6063 19 1 2.1200 -2.8218 -5.7484 20 6 0.1807 -3.1246 -6.5871 21 7 -1.1157 -2.9852 -6.4145 22 14 0.8366 -3.8861 -8.1616 23 1 0.9536 -5.3564 -7.9890 24 1 -0.0953 -3.5916 -9.2796 25 1 2.1731 -3.3158 -8.4680 26 1 -0.3634 -1.0251 -0.0714 27 1 -0.3633 0.4508 0.9234 28 1 -0.3633 0.5744 -0.8522 29 1 1.7659 -0.1667 2.1368 30 1 1.6024 -1.7250 1.2918 31 1 6.0492 -0.6683 2.2831 32 1 5.9809 -2.1608 3.2510 33 1 5.8873 -2.2463 1.4758 34 1 2.6123 -0.6444 3.7153 35 1 4.0678 -1.2250 4.5593 36 1 4.1359 0.2676 3.5915 37 1 3.7496 -3.5252 1.6498 38 1 3.8428 -3.4398 3.4251 39 1 2.3868 -2.8594 2.5814 40 1 3.4982 -2.6529 -0.0050 41 1 5.0411 -1.7698 -0.1034 42 1 3.9903 0.0018 -1.4316 43 1 3.6541 -1.5709 -2.1973 44 1 2.3409 -1.0047 -3.9326 45 1 2.2687 -2.6174 -3.1828 46 1 -0.1184 -2.8093 -3.8274 47 1 -0.0455 -1.1966 -4.5769 48 1 -1.7311 -3.2781 -7.1046 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360621722.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:36 Heat of formation + Delta-G solvation = -57.134131 kcal Electronic energy + Delta-G solvation = -23482.826850 eV Core-core repulsion = 20343.941124 eV Total energy + Delta-G solvation = -3138.885726 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.48441 -38.63405 -35.74642 -33.74174 -32.71343 -31.38660 -30.56056 -28.15372 -27.52508 -26.79652 -25.64052 -24.34380 -22.45948 -21.74937 -20.48231 -18.56799 -18.27030 -16.75578 -15.89765 -15.71226 -15.36810 -15.05158 -14.54837 -14.45065 -14.29719 -14.15759 -13.67419 -13.25564 -12.98319 -12.51486 -12.39146 -12.33610 -12.19408 -12.07899 -12.01916 -11.90622 -11.85797 -11.37820 -11.26290 -11.18484 -11.02378 -10.91314 -10.78297 -10.57024 -10.51006 -10.25655 -10.18710 -9.90565 -9.51831 -9.07440 -8.39845 -8.31314 -8.20140 -5.94048 -3.98163 3.29242 3.34272 3.35246 3.40783 3.43535 4.44086 4.48332 4.49579 4.55249 4.85583 5.00685 5.06129 5.09087 5.24943 5.27162 5.37903 5.40839 5.40972 5.48328 5.55632 5.56684 5.60491 5.68250 5.71170 5.75874 5.77116 5.83353 5.89147 5.92420 5.99192 6.03009 6.09733 6.13070 6.22818 6.25057 6.27646 6.34766 6.50366 6.68159 6.93597 7.04362 7.76946 7.88102 7.90014 8.10037 8.41942 8.86013 9.10637 9.65144 11.16909 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.026759 B = 0.003668 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.112750 B = 7631.721442 C = 8247.534750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.144 3.856 3 H 0.061 0.939 4 C -0.128 4.128 5 C -0.074 4.074 6 H 0.069 0.931 7 C -0.064 4.064 8 C -0.143 4.143 9 C -0.143 4.143 10 C -0.146 4.146 11 C -0.134 4.134 12 C 0.109 3.891 13 N -0.621 5.621 14 C 0.512 3.488 15 O -0.527 6.527 16 C -0.130 4.130 17 C 0.038 3.962 18 C -0.526 4.526 19 H 0.055 0.945 20 C 0.058 3.942 21 N -0.890 5.890 22 Si 0.892 3.108 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.274 1.274 26 H 0.072 0.928 27 H 0.034 0.966 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.051 0.949 36 H 0.053 0.947 37 H 0.058 0.942 38 H 0.050 0.950 39 H 0.058 0.942 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.061 0.939 43 H 0.090 0.910 44 H 0.077 0.923 45 H 0.076 0.924 46 H 0.022 0.978 47 H 0.023 0.977 48 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.201 4.785 19.729 24.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.041 3.959 3 H 0.079 0.921 4 C -0.166 4.166 5 C -0.093 4.093 6 H 0.087 0.913 7 C -0.064 4.064 8 C -0.200 4.200 9 C -0.200 4.200 10 C -0.203 4.203 11 C -0.172 4.172 12 C -0.015 4.015 13 N -0.357 5.357 14 C 0.302 3.698 15 O -0.403 6.403 16 C -0.170 4.170 17 C 0.001 3.999 18 C -0.564 4.564 19 H 0.073 0.927 20 C -0.144 4.144 21 N -0.529 5.529 22 Si 0.720 3.280 23 H -0.207 1.207 24 H -0.212 1.212 25 H -0.199 1.199 26 H 0.091 0.909 27 H 0.052 0.948 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.069 0.931 39 H 0.077 0.923 40 H 0.090 0.910 41 H 0.093 0.907 42 H 0.080 0.920 43 H 0.109 0.891 44 H 0.095 0.905 45 H 0.094 0.906 46 H 0.041 0.959 47 H 0.041 0.959 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 12.361 4.825 19.709 23.759 hybrid contribution 0.480 -0.422 -0.839 1.055 sum 12.841 4.403 18.870 23.245 Atomic orbital electron populations 1.22193 0.92683 1.04132 1.00121 1.21179 0.95772 0.94544 0.84417 0.92104 1.22187 0.95204 1.01673 0.97565 1.21148 0.95539 0.98886 0.93730 0.91286 1.20533 0.95340 0.95641 0.94877 1.21928 0.94774 1.01607 1.01714 1.21925 1.01604 0.99566 0.96935 1.21984 1.00995 0.95779 1.01550 1.22112 1.01055 0.99852 0.94183 1.21673 0.80836 1.00184 0.98757 1.48322 1.07110 1.59460 1.20820 1.21480 0.86431 0.77024 0.84844 1.90706 1.15933 1.54529 1.79097 1.21907 1.02629 0.99853 0.92629 1.18887 0.91405 0.97362 0.92276 1.21227 0.92888 1.40467 1.01852 0.92693 1.25026 0.94846 0.96021 0.98495 1.69999 1.01486 1.47131 1.34234 0.86604 0.78711 0.79536 0.83172 1.20694 1.21242 1.19895 0.90865 0.94769 0.90945 0.91047 0.91152 0.92817 0.92969 0.92225 0.92294 0.92963 0.92825 0.92260 0.93107 0.92327 0.91041 0.90693 0.92038 0.89122 0.90506 0.90550 0.95913 0.95889 0.92989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.07 7.59 37.16 0.28 -1.78 16 2 C 0.14 1.92 3.49 -67.60 -0.24 1.69 16 3 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 4 C -0.13 -1.37 3.94 -26.61 -0.10 -1.47 16 5 C -0.07 -0.68 1.51 -90.58 -0.14 -0.81 16 6 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 7 C -0.06 -0.51 0.57 -154.51 -0.09 -0.60 16 8 C -0.14 -1.03 8.12 37.16 0.30 -0.73 16 9 C -0.14 -1.06 8.12 37.16 0.30 -0.76 16 10 C -0.15 -1.25 7.77 37.15 0.29 -0.96 16 11 C -0.13 -1.30 4.65 -26.61 -0.12 -1.43 16 12 C 0.11 1.27 6.32 -3.71 -0.02 1.25 16 13 N -0.62 -9.34 2.97 -165.23 -0.49 -9.83 16 14 C 0.51 10.05 7.60 -10.98 -0.08 9.96 16 15 O -0.53 -12.12 11.38 5.56 0.06 -12.05 16 16 C -0.13 -2.70 4.04 -27.89 -0.11 -2.81 16 17 C 0.04 1.04 4.26 -27.89 -0.12 0.92 16 18 C -0.53 -15.04 9.11 -34.44 -0.31 -15.35 16 19 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 20 C 0.06 1.69 5.46 -17.81 -0.10 1.59 16 21 N -0.89 -27.62 13.29 55.43 0.74 -26.88 16 22 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 26 H 0.07 1.31 6.73 -51.93 -0.35 0.96 16 27 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 1.30 6.77 -51.93 -0.35 0.94 16 29 H 0.07 0.68 6.36 -51.93 -0.33 0.34 16 30 H 0.07 0.85 6.51 -51.93 -0.34 0.51 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.43 6.40 -51.93 -0.33 0.10 16 34 H 0.06 0.45 6.40 -51.92 -0.33 0.12 16 35 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.06 0.53 6.46 -51.92 -0.34 0.20 16 38 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.06 0.54 6.46 -51.93 -0.34 0.20 16 40 H 0.07 0.78 6.51 -51.93 -0.34 0.44 16 41 H 0.07 0.61 6.36 -51.93 -0.33 0.28 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.09 1.08 5.97 -51.93 -0.31 0.77 16 44 H 0.08 1.48 8.11 -51.93 -0.42 1.06 16 45 H 0.08 1.46 7.48 -51.93 -0.39 1.07 16 46 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 47 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 48 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 353.11 15.07 5.32 5.32 Total: -1.00 -32.28 353.11 -8.34 -40.62 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -8.68 Total: -2.66 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: -0.27 Total: -11.29 kcal Atomic # 7 Polarization: -36.95 SS G_CDS: 0.25 Total: -36.71 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: 0.06 Total: -12.05 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.28 -8.34 -40.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360621722.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.514 kcal (2) G-P(sol) polarization free energy of solvation -32.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds