Wall clock time and date at job start Tue Mar 31 2020 05:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 109.70522 * 2 1 4 4 C 1.53197 * 109.58287 * 120.35229 * 2 1 3 5 5 C 1.53043 * 109.31226 * 174.41829 * 4 2 1 6 6 H 1.09003 * 109.45778 * 58.65544 * 5 4 2 7 7 C 1.52997 * 109.45776 * 178.61177 * 5 4 2 8 8 C 1.53006 * 109.46862 * 180.02562 * 7 5 4 9 9 C 1.52997 * 109.47625 * 300.06905 * 7 5 4 10 10 C 1.52994 * 109.47218 * 60.07481 * 7 5 4 11 11 C 1.53040 * 109.54139 * 298.63794 * 5 4 2 12 12 C 1.53192 * 109.31196 * 61.36187 * 11 5 4 13 13 N 1.46924 * 109.58836 * 239.63766 * 2 1 3 14 14 C 1.34788 * 120.62950 * 6.58785 * 13 2 1 15 15 O 1.21274 * 119.99794 * 354.96847 * 14 13 2 16 16 C 1.50693 * 119.99821 * 174.97189 * 14 13 2 17 17 C 1.53001 * 109.47132 * 180.02562 * 16 14 13 18 18 C 1.50693 * 109.47132 * 180.02562 * 17 16 14 19 19 H 1.07998 * 120.00673 * 359.97438 * 18 17 16 20 20 C 1.37885 * 119.99901 * 179.97438 * 18 17 16 21 21 N 1.31520 * 119.99918 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00054 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47071 * 90.00563 * 22 20 18 24 24 H 1.48498 * 109.47187 * 210.00141 * 22 20 18 25 25 H 1.48495 * 109.47515 * 330.00502 * 22 20 18 26 26 H 1.08999 * 109.47738 * 176.01750 * 1 2 3 27 27 H 1.08994 * 109.47224 * 296.02332 * 1 2 3 28 28 H 1.09000 * 109.46755 * 56.01955 * 1 2 3 29 29 H 1.08997 * 109.49545 * 294.37345 * 4 2 1 30 30 H 1.08997 * 109.49996 * 54.43816 * 4 2 1 31 31 H 1.09002 * 109.46624 * 60.00361 * 8 7 5 32 32 H 1.08996 * 109.47254 * 180.02562 * 8 7 5 33 33 H 1.08999 * 109.47491 * 300.00697 * 8 7 5 34 34 H 1.09009 * 109.46652 * 59.99942 * 9 7 5 35 35 H 1.08994 * 109.47345 * 179.97438 * 9 7 5 36 36 H 1.08998 * 109.46958 * 300.00465 * 9 7 5 37 37 H 1.09009 * 109.47230 * 59.99331 * 10 7 5 38 38 H 1.08994 * 109.47772 * 179.97438 * 10 7 5 39 39 H 1.09002 * 109.47412 * 299.99846 * 10 7 5 40 40 H 1.09001 * 109.49241 * 301.41328 * 11 5 4 41 41 H 1.08997 * 109.49804 * 181.31749 * 11 5 4 42 42 H 1.08993 * 109.58868 * 65.15494 * 12 11 5 43 43 H 1.09002 * 109.58765 * 185.43841 * 12 11 5 44 44 H 1.09003 * 109.47373 * 299.99923 * 16 14 13 45 45 H 1.08995 * 109.47620 * 59.99753 * 16 14 13 46 46 H 1.09003 * 109.46810 * 300.00122 * 17 16 14 47 47 H 1.08995 * 109.47189 * 59.99343 * 17 16 14 48 48 H 0.96991 * 119.99686 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0434 -0.7293 1.2455 5 6 3.5674 -0.8481 1.1703 6 1 4.0061 0.1473 1.0994 7 6 4.0870 -1.5454 2.4291 8 6 5.6107 -1.6636 2.3544 9 6 3.6979 -0.7280 3.6625 10 6 3.4723 -2.9428 2.5286 11 6 3.9569 -1.6659 -0.0633 12 6 3.4650 -0.9471 -1.3236 13 7 2.0225 -0.6997 -1.1944 14 6 1.1673 -1.1071 -2.1532 15 8 -0.0281 -0.9794 -1.9935 16 6 1.6965 -1.7214 -3.4234 17 6 0.5263 -2.0928 -4.3364 18 6 1.0556 -2.7076 -5.6063 19 1 2.1200 -2.8218 -5.7484 20 6 0.1807 -3.1246 -6.5871 21 7 -1.1157 -2.9852 -6.4145 22 14 0.8366 -3.8861 -8.1616 23 1 0.9536 -5.3564 -7.9890 24 1 -0.0953 -3.5916 -9.2796 25 1 2.1731 -3.3158 -8.4680 26 1 -0.3634 -1.0251 -0.0714 27 1 -0.3633 0.4508 0.9234 28 1 -0.3633 0.5744 -0.8522 29 1 1.7659 -0.1667 2.1368 30 1 1.6024 -1.7250 1.2918 31 1 6.0492 -0.6683 2.2831 32 1 5.9809 -2.1608 3.2510 33 1 5.8873 -2.2463 1.4758 34 1 2.6123 -0.6444 3.7153 35 1 4.0678 -1.2250 4.5593 36 1 4.1359 0.2676 3.5915 37 1 3.7496 -3.5252 1.6498 38 1 3.8428 -3.4398 3.4251 39 1 2.3868 -2.8594 2.5814 40 1 3.4982 -2.6529 -0.0050 41 1 5.0411 -1.7698 -0.1034 42 1 3.9903 0.0018 -1.4316 43 1 3.6541 -1.5709 -2.1973 44 1 2.3409 -1.0047 -3.9326 45 1 2.2687 -2.6174 -3.1828 46 1 -0.1184 -2.8093 -3.8274 47 1 -0.0455 -1.1966 -4.5769 48 1 -1.7311 -3.2781 -7.1046 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360621722.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:35 Heat of formation + Delta-G solvation = -75.416367 kcal Electronic energy + Delta-G solvation = -23483.619627 eV Core-core repulsion = 20343.941124 eV Total energy + Delta-G solvation = -3139.678503 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.64943 -39.72077 -36.88942 -35.68580 -34.18323 -32.59410 -32.16934 -29.03412 -28.16174 -27.78694 -27.44044 -25.39496 -24.06026 -22.79363 -21.88474 -19.84756 -19.12295 -18.63260 -17.37145 -17.05180 -16.72036 -16.40681 -15.95899 -15.44213 -15.11821 -15.06311 -14.87013 -14.49756 -14.35291 -14.06537 -13.65963 -13.38981 -13.34056 -13.23397 -13.08377 -13.01955 -12.80320 -12.68846 -12.62779 -12.45747 -12.24084 -12.12135 -11.89852 -11.86905 -11.68478 -11.56281 -11.27994 -11.22127 -11.04463 -10.93201 -10.56976 -9.93592 -9.44810 -8.18161 -6.32366 1.41419 1.44418 1.55365 1.75701 2.10377 2.43138 3.14598 3.66530 3.69149 3.78272 3.94874 4.09847 4.18955 4.29114 4.32606 4.33636 4.45131 4.48910 4.51928 4.56221 4.69553 4.77881 4.81723 4.84996 4.88107 4.90164 4.97944 5.02940 5.06030 5.11675 5.15315 5.16409 5.20122 5.24281 5.29365 5.37323 5.42762 5.49244 5.51925 5.62286 5.63066 5.68107 5.81929 5.86522 6.17852 6.51394 6.86325 7.36258 7.39232 8.94529 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.026759 B = 0.003668 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.112750 B = 7631.721442 C = 8247.534750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.140 3.860 3 H 0.082 0.918 4 C -0.119 4.119 5 C -0.070 4.070 6 H 0.082 0.918 7 C -0.059 4.059 8 C -0.141 4.141 9 C -0.143 4.143 10 C -0.147 4.147 11 C -0.129 4.129 12 C 0.099 3.901 13 N -0.610 5.610 14 C 0.506 3.494 15 O -0.574 6.574 16 C -0.117 4.117 17 C 0.046 3.954 18 C -0.543 4.543 19 H 0.075 0.925 20 C -0.007 4.007 21 N -0.938 5.938 22 Si 0.974 3.026 23 H -0.271 1.271 24 H -0.286 1.286 25 H -0.255 1.255 26 H 0.040 0.960 27 H 0.062 0.938 28 H 0.039 0.961 29 H 0.089 0.911 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.053 0.947 35 H 0.056 0.944 36 H 0.061 0.939 37 H 0.052 0.948 38 H 0.057 0.943 39 H 0.046 0.954 40 H 0.057 0.943 41 H 0.100 0.900 42 H 0.086 0.914 43 H 0.089 0.911 44 H 0.097 0.903 45 H 0.096 0.904 46 H -0.020 1.020 47 H -0.019 1.019 48 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.769 5.103 20.453 26.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.038 3.962 3 H 0.100 0.900 4 C -0.157 4.157 5 C -0.088 4.088 6 H 0.101 0.899 7 C -0.059 4.059 8 C -0.198 4.198 9 C -0.200 4.200 10 C -0.204 4.204 11 C -0.166 4.166 12 C -0.022 4.022 13 N -0.344 5.344 14 C 0.296 3.704 15 O -0.454 6.454 16 C -0.157 4.157 17 C 0.008 3.992 18 C -0.581 4.581 19 H 0.093 0.907 20 C -0.205 4.205 21 N -0.578 5.578 22 Si 0.798 3.202 23 H -0.197 1.197 24 H -0.212 1.212 25 H -0.178 1.178 26 H 0.059 0.941 27 H 0.080 0.920 28 H 0.058 0.942 29 H 0.107 0.893 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.065 0.935 40 H 0.075 0.925 41 H 0.118 0.882 42 H 0.104 0.896 43 H 0.107 0.893 44 H 0.115 0.885 45 H 0.115 0.885 46 H -0.002 1.002 47 H -0.001 1.001 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 15.997 5.153 20.472 26.487 hybrid contribution -0.656 -0.494 -0.986 1.283 sum 15.340 4.659 19.487 25.234 Atomic orbital electron populations 1.22004 0.94666 1.01700 1.00033 1.21379 0.94247 0.95836 0.84745 0.89992 1.22114 0.96515 1.00530 0.96579 1.21139 0.94024 0.99630 0.94038 0.89925 1.20491 0.95995 0.94955 0.94501 1.21911 0.93770 1.02164 1.01995 1.21919 1.01381 0.99911 0.96766 1.21989 1.00324 0.96461 1.01606 1.22092 1.02356 0.98859 0.93343 1.22015 0.78510 1.01783 0.99933 1.48305 1.08210 1.57880 1.20015 1.21273 0.86221 0.77330 0.85530 1.90714 1.17950 1.56710 1.80065 1.21651 1.00187 1.01411 0.92461 1.18654 0.92775 0.94339 0.93389 1.21707 0.93924 1.40191 1.02236 0.90725 1.26151 0.94950 0.96466 1.02891 1.70184 1.03339 1.48471 1.35789 0.85316 0.78603 0.78698 0.77601 1.19669 1.21163 1.17837 0.94100 0.91982 0.94156 0.89255 0.92892 0.92022 0.92576 0.92164 0.92753 0.92483 0.92039 0.92889 0.92416 0.93513 0.92474 0.88207 0.89570 0.89267 0.88466 0.88538 1.00172 1.00083 0.92874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.03 7.59 71.98 0.55 -3.48 16 2 C 0.14 3.59 3.49 44.98 0.16 3.74 16 3 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 4 C -0.12 -2.33 3.94 30.67 0.12 -2.21 16 5 C -0.07 -1.06 1.51 -10.77 -0.02 -1.07 16 6 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 7 C -0.06 -0.77 0.57 -52.18 -0.03 -0.80 16 8 C -0.14 -1.54 8.12 71.98 0.58 -0.95 16 9 C -0.14 -1.69 8.12 71.98 0.58 -1.10 16 10 C -0.15 -2.27 7.77 71.98 0.56 -1.71 16 11 C -0.13 -2.14 4.65 30.67 0.14 -1.99 16 12 C 0.10 2.06 6.32 86.36 0.55 2.61 16 13 N -0.61 -17.90 2.97 -795.04 -2.36 -20.26 16 14 C 0.51 20.52 7.60 87.65 0.67 21.19 16 15 O -0.57 -28.34 11.38 -3.01 -0.03 -28.38 16 16 C -0.12 -4.93 4.04 29.85 0.12 -4.81 16 17 C 0.05 2.63 4.26 29.85 0.13 2.76 16 18 C -0.54 -31.46 9.11 25.60 0.23 -31.22 16 19 H 0.07 3.94 7.74 -2.91 -0.02 3.91 16 20 C -0.01 -0.43 5.46 84.66 0.46 0.03 16 21 N -0.94 -60.36 13.29 21.45 0.28 -60.08 16 22 Si 0.97 44.78 29.54 68.60 2.03 46.81 16 23 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 24 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 25 H -0.25 -10.83 7.11 99.48 0.71 -10.13 16 26 H 0.04 1.55 6.73 -2.39 -0.02 1.53 16 27 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.04 1.52 6.77 -2.39 -0.02 1.50 16 29 H 0.09 1.46 6.36 -2.39 -0.02 1.44 16 30 H 0.05 1.24 6.51 -2.39 -0.02 1.23 16 31 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.06 0.65 6.40 -2.39 -0.02 0.64 16 34 H 0.05 0.69 6.40 -2.38 -0.02 0.68 16 35 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.05 0.88 6.46 -2.38 -0.02 0.86 16 38 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.05 0.83 6.46 -2.39 -0.02 0.81 16 40 H 0.06 1.14 6.51 -2.39 -0.02 1.13 16 41 H 0.10 1.22 6.36 -2.39 -0.02 1.21 16 42 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.09 1.90 5.97 -2.39 -0.01 1.89 16 44 H 0.10 3.66 8.11 -2.39 -0.02 3.64 16 45 H 0.10 3.63 7.48 -2.39 -0.02 3.61 16 46 H -0.02 -1.30 8.10 -2.39 -0.02 -1.32 16 47 H -0.02 -1.24 8.10 -2.39 -0.02 -1.26 16 48 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 Total: -1.00 -74.74 353.11 5.63 -69.11 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: 0.91 Total: 11.82 kcal Atomic # 6 Polarization: -23.83 SS G_CDS: 4.81 Total: -19.03 kcal Atomic # 7 Polarization: -78.26 SS G_CDS: -2.08 Total: -80.34 kcal Atomic # 8 Polarization: -28.34 SS G_CDS: -0.03 Total: -28.38 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -74.74 5.63 -69.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360621722.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.306 kcal (2) G-P(sol) polarization free energy of solvation -74.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds