Wall clock time and date at job start Tue Mar 31 2020 06:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 113.99790 * 2 1 4 4 C 1.52996 * 109.47067 * 64.88895 * 3 2 1 5 5 N 1.46900 * 109.46993 * 66.06754 * 4 3 2 6 6 C 1.46903 * 110.99769 * 87.88218 * 5 4 3 7 7 C 1.50706 * 109.46820 * 193.69295 * 6 5 4 8 8 H 1.08005 * 119.99933 * 359.97438 * 7 6 5 9 9 C 1.37879 * 119.99773 * 179.97438 * 7 6 5 10 10 N 1.31512 * 120.00341 * 0.02562 * 9 7 6 11 11 Si 1.86807 * 119.99677 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47048 * 60.00104 * 11 9 7 13 13 H 1.48496 * 109.46890 * 180.02562 * 11 9 7 14 14 H 1.48496 * 109.46924 * 300.00216 * 11 9 7 15 15 C 1.46898 * 110.99926 * 211.83017 * 5 4 3 16 16 C 1.53006 * 109.46837 * 76.12701 * 15 5 4 17 17 C 1.53005 * 117.49639 * 242.00592 * 16 15 5 18 18 C 1.52996 * 117.49776 * 173.34875 * 16 15 5 19 19 C 1.53001 * 109.47223 * 304.88913 * 3 2 1 20 20 C 1.53003 * 109.47136 * 300.00594 * 19 3 2 21 21 C 1.53003 * 109.46825 * 299.99446 * 20 19 3 22 22 C 1.52995 * 109.47117 * 59.99951 * 21 20 19 23 23 C 1.53000 * 109.47565 * 300.00233 * 22 21 20 24 24 H 1.09001 * 109.46638 * 185.50345 * 1 2 3 25 25 H 1.08997 * 109.47357 * 305.49680 * 1 2 3 26 26 H 1.08998 * 109.47499 * 65.50323 * 1 2 3 27 27 H 1.08999 * 109.47068 * 186.06405 * 4 3 2 28 28 H 1.09000 * 109.47180 * 306.06589 * 4 3 2 29 29 H 1.08997 * 109.47146 * 313.69113 * 6 5 4 30 30 H 1.08996 * 109.47746 * 73.69406 * 6 5 4 31 31 H 0.96997 * 119.99889 * 179.97438 * 10 9 7 32 32 H 1.09001 * 109.47226 * 196.12146 * 15 5 4 33 33 H 1.08994 * 109.47392 * 316.12420 * 15 5 4 34 34 H 1.08993 * 115.54637 * 27.67537 * 16 15 5 35 35 H 1.08999 * 117.49673 * 359.97438 * 17 16 15 36 36 H 1.09001 * 117.49243 * 145.01959 * 17 16 15 37 37 H 1.09004 * 117.49636 * 214.98089 * 18 16 15 38 38 H 1.09002 * 117.50287 * 359.97438 * 18 16 15 39 39 H 1.08992 * 109.47610 * 180.02562 * 19 3 2 40 40 H 1.09001 * 109.46844 * 59.99747 * 19 3 2 41 41 H 1.09002 * 109.47180 * 179.97438 * 20 19 3 42 42 H 1.08993 * 109.47596 * 59.99746 * 20 19 3 43 43 H 1.09001 * 109.46915 * 180.02562 * 21 20 19 44 44 H 1.09007 * 109.47345 * 300.00396 * 21 20 19 45 45 H 1.09006 * 109.47175 * 60.00037 * 22 21 20 46 46 H 1.08996 * 109.47565 * 179.97438 * 22 21 20 47 47 H 1.09000 * 109.47094 * 300.00279 * 23 22 21 48 48 H 1.08993 * 109.47346 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.6584 2.0203 1.3061 5 7 2.3049 1.3313 2.4309 6 6 3.6590 1.8531 2.6597 7 6 4.4087 0.9201 3.5755 8 1 3.9272 0.0290 3.9505 9 6 5.7092 1.2042 3.9347 10 7 6.2953 2.2895 3.4785 11 14 6.6382 0.0481 5.0705 12 1 6.7241 -1.2963 4.4459 13 1 8.0070 0.5754 5.3017 14 1 5.9218 -0.0533 6.3673 15 6 1.4895 1.4317 3.6487 16 6 0.3079 0.4645 3.5523 17 6 -1.0995 1.0646 3.5690 18 6 -0.5767 0.3043 4.7903 19 6 1.4638 2.1070 -1.1832 20 6 1.8155 1.3920 -2.4894 21 6 3.3360 1.2734 -2.6124 22 6 3.8824 0.4720 -1.4292 23 6 3.5307 1.1869 -0.1230 24 1 -0.3633 -1.0230 0.0986 25 1 -0.3634 0.5967 0.8366 26 1 -0.3634 0.4261 -0.9351 27 1 2.0089 3.0515 1.2618 28 1 0.5775 2.0097 1.4464 29 1 4.1850 1.9283 1.7080 30 1 3.5956 2.8396 3.1187 31 1 7.2101 2.4895 3.7316 32 1 2.0984 1.1761 4.5158 33 1 1.1173 2.4507 3.7537 34 1 0.4717 -0.4175 2.9332 35 1 -1.1835 2.1484 3.6490 36 1 -1.8616 0.5771 2.9611 37 1 -0.9952 -0.6831 4.9855 38 1 -0.3166 0.8876 5.6737 39 1 1.9074 3.1026 -1.1835 40 1 0.3806 2.1914 -1.0956 41 1 1.4259 1.9628 -3.3324 42 1 1.3723 0.3963 -2.4894 43 1 3.5866 0.7645 -3.5432 44 1 3.7794 2.2693 -2.6124 45 1 3.4391 -0.5238 -1.4291 46 1 4.9655 0.3871 -1.5170 47 1 3.9739 2.1827 -0.1230 48 1 3.9195 0.6157 0.7199 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361567735.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:16 Heat of formation + Delta-G solvation = -25.303435 kcal Electronic energy + Delta-G solvation = -24450.987453 eV Core-core repulsion = 21313.482010 eV Total energy + Delta-G solvation = -3137.505443 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.74557 -37.47451 -35.38807 -35.29181 -32.44761 -30.53745 -30.31974 -27.51901 -26.47981 -25.94410 -23.98209 -22.17154 -22.12160 -21.26183 -20.22625 -19.52796 -19.17663 -16.36755 -15.97981 -15.42299 -15.23497 -15.01572 -14.68047 -14.45603 -14.01750 -13.58857 -13.50069 -13.15672 -13.03317 -12.64527 -12.16284 -12.07014 -11.82271 -11.70398 -11.52450 -11.33996 -11.18719 -11.12892 -10.91555 -10.80809 -10.74945 -10.59446 -10.47123 -10.12542 -10.06411 -9.84242 -9.57770 -9.44151 -9.38272 -9.17843 -8.73129 -8.32348 -7.11418 -5.97577 -3.97394 3.37037 3.40855 3.44609 4.15001 4.29178 4.47722 4.77758 5.03807 5.08783 5.10122 5.24266 5.28089 5.38153 5.44571 5.53689 5.60677 5.69400 5.71180 5.74209 5.82382 5.85895 5.88759 5.93695 5.94412 5.95767 6.04975 6.11438 6.18841 6.20311 6.26990 6.34127 6.36797 6.38634 6.48323 6.56032 6.60392 6.72908 6.86619 6.89095 7.17550 7.36214 7.41486 7.82471 7.90965 8.18176 8.29943 8.62750 9.10904 9.66246 11.12903 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.012061 B = 0.007408 C = 0.005059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.919201 B = 3778.958840 C = 5533.436444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.355 6.355 3 C 0.136 3.864 4 C 0.030 3.970 5 N -0.519 5.519 6 C 0.176 3.824 7 C -0.502 4.502 8 H 0.062 0.938 9 C 0.056 3.944 10 N -0.900 5.900 11 Si 0.894 3.106 12 H -0.276 1.276 13 H -0.289 1.289 14 H -0.279 1.279 15 C 0.092 3.908 16 C -0.127 4.127 17 C -0.195 4.195 18 C -0.185 4.185 19 C -0.147 4.147 20 C -0.110 4.110 21 C -0.118 4.118 22 C -0.116 4.116 23 C -0.108 4.108 24 H 0.073 0.927 25 H 0.044 0.956 26 H 0.030 0.970 27 H 0.034 0.966 28 H 0.061 0.939 29 H 0.053 0.947 30 H -0.016 1.016 31 H 0.260 0.740 32 H 0.087 0.913 33 H 0.017 0.983 34 H 0.112 0.888 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.067 0.933 40 H 0.059 0.941 41 H 0.052 0.948 42 H 0.064 0.936 43 H 0.053 0.947 44 H 0.056 0.944 45 H 0.066 0.934 46 H 0.056 0.944 47 H 0.067 0.933 48 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.062 -1.027 -8.033 14.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.273 6.273 3 C 0.096 3.904 4 C -0.099 4.099 5 N -0.243 5.243 6 C 0.051 3.949 7 C -0.540 4.540 8 H 0.081 0.919 9 C -0.145 4.145 10 N -0.540 5.540 11 Si 0.722 3.278 12 H -0.202 1.202 13 H -0.215 1.215 14 H -0.204 1.204 15 C -0.037 4.037 16 C -0.146 4.146 17 C -0.232 4.232 18 C -0.222 4.222 19 C -0.185 4.185 20 C -0.148 4.148 21 C -0.155 4.155 22 C -0.154 4.154 23 C -0.145 4.145 24 H 0.091 0.909 25 H 0.063 0.937 26 H 0.049 0.951 27 H 0.052 0.948 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.002 0.998 31 H 0.070 0.930 32 H 0.106 0.894 33 H 0.035 0.965 34 H 0.130 0.870 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.106 0.894 38 H 0.108 0.892 39 H 0.086 0.914 40 H 0.077 0.923 41 H 0.071 0.929 42 H 0.083 0.917 43 H 0.072 0.928 44 H 0.075 0.925 45 H 0.085 0.915 46 H 0.075 0.925 47 H 0.085 0.915 48 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -11.712 -1.580 -8.139 14.350 hybrid contribution 0.176 0.666 0.894 1.128 sum -11.536 -0.914 -7.245 13.653 Atomic orbital electron populations 1.22691 0.83463 1.01628 0.99292 1.88001 1.17639 1.27087 1.94595 1.21377 0.94373 0.82932 0.91683 1.22634 0.98420 0.95569 0.93246 1.61937 1.03658 1.56031 1.02643 1.20195 0.83208 0.93349 0.98133 1.21138 0.97137 1.07986 1.27787 0.91947 1.24951 0.97594 0.95379 0.96584 1.69941 1.13364 1.25349 1.45313 0.86625 0.78722 0.81249 0.81199 1.20178 1.21509 1.20429 1.21582 0.92758 0.94215 0.95106 1.22507 0.90334 1.01804 0.99960 1.23028 0.98477 0.99322 1.02327 1.22900 1.05195 1.01294 0.92819 1.22166 1.00544 0.99858 0.95926 1.21405 0.96540 1.00639 0.96216 1.21541 0.95410 1.00266 0.98315 1.21497 0.99903 0.99635 0.94328 1.21811 0.92302 1.01446 0.98919 0.90883 0.93733 0.95126 0.94761 0.92014 0.92907 0.99813 0.93015 0.89431 0.96515 0.87031 0.89595 0.89667 0.89373 0.89201 0.91400 0.92257 0.92942 0.91683 0.92792 0.92508 0.91526 0.92503 0.91453 0.87412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.01 101.05 1.01 1.36 16 2 O -0.35 -5.99 8.97 -35.23 -0.32 -6.31 16 3 C 0.14 2.25 0.49 -90.62 -0.04 2.21 16 4 C 0.03 0.54 3.99 -3.83 -0.02 0.53 16 5 N -0.52 -10.82 3.92 -236.07 -0.92 -11.75 16 6 C 0.18 4.40 3.60 -4.97 -0.02 4.39 16 7 C -0.50 -13.80 8.29 -34.44 -0.29 -14.09 16 8 H 0.06 1.73 7.56 -52.48 -0.40 1.33 16 9 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 10 N -0.90 -26.30 13.29 55.43 0.74 -25.57 16 11 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 14 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 15 C 0.09 1.77 5.00 -3.82 -0.02 1.75 16 16 C -0.13 -2.04 4.80 -90.62 -0.43 -2.48 16 17 C -0.19 -2.58 9.94 -26.69 -0.27 -2.84 16 18 C -0.18 -2.54 10.25 -26.70 -0.27 -2.81 16 19 C -0.15 -2.02 4.22 -26.73 -0.11 -2.13 16 20 C -0.11 -1.40 5.71 -26.73 -0.15 -1.55 16 21 C -0.12 -1.57 5.92 -26.73 -0.16 -1.72 16 22 C -0.12 -1.84 5.78 -26.73 -0.15 -1.99 16 23 C -0.11 -1.98 3.32 -26.73 -0.09 -2.07 16 24 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.04 0.60 5.61 -51.93 -0.29 0.31 16 26 H 0.03 0.36 6.36 -51.93 -0.33 0.03 16 27 H 0.03 0.64 7.81 -51.93 -0.41 0.23 16 28 H 0.06 1.01 5.28 -51.93 -0.27 0.74 16 29 H 0.05 1.36 4.33 -51.93 -0.22 1.14 16 30 H -0.02 -0.44 8.08 -51.93 -0.42 -0.86 16 31 H 0.26 7.27 8.31 -40.82 -0.34 6.94 16 32 H 0.09 1.90 6.87 -51.93 -0.36 1.54 16 33 H 0.02 0.32 7.72 -51.93 -0.40 -0.08 16 34 H 0.11 1.93 8.14 -51.93 -0.42 1.51 16 35 H 0.09 1.13 8.03 -51.93 -0.42 0.71 16 36 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 38 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.06 0.75 6.61 -51.93 -0.34 0.40 16 41 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.85 7.33 -51.93 -0.38 0.47 16 43 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 45 H 0.07 1.09 7.68 -51.93 -0.40 0.69 16 46 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 47 H 0.07 1.28 7.46 -51.93 -0.39 0.89 16 48 H 0.11 2.41 5.89 -51.93 -0.31 2.11 16 LS Contribution 356.16 15.07 5.37 5.37 Total: -1.00 -28.41 356.16 -9.96 -38.37 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -8.70 Total: 3.19 kcal Atomic # 6 Polarization: -18.87 SS G_CDS: -1.11 Total: -19.98 kcal Atomic # 7 Polarization: -37.13 SS G_CDS: -0.19 Total: -37.31 kcal Atomic # 8 Polarization: -5.99 SS G_CDS: -0.32 Total: -6.31 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -28.41 -9.96 -38.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361567735.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.069 kcal (2) G-P(sol) polarization free energy of solvation -28.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds