Wall clock time and date at job start Tue Mar 31 2020 05:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.54253 * 2 1 4 4 C 1.53095 * 109.50720 * 120.11293 * 2 1 3 5 5 N 1.47017 * 109.26087 * 63.08588 * 4 2 1 6 6 C 1.46898 * 111.00134 * 182.39786 * 5 4 2 7 7 C 1.53002 * 109.46833 * 182.46838 * 6 5 4 8 8 C 1.52994 * 109.47477 * 324.02605 * 7 6 5 9 9 C 1.52999 * 109.47053 * 84.02925 * 7 6 5 10 10 C 1.53002 * 109.46748 * 204.02408 * 7 6 5 11 11 C 1.50706 * 109.46691 * 180.02562 * 10 7 6 12 12 H 1.07994 * 120.00343 * 359.97438 * 11 10 7 13 13 C 1.37878 * 119.99540 * 180.02562 * 11 10 7 14 14 N 1.31517 * 119.99610 * 179.97438 * 13 11 10 15 15 Si 1.86797 * 120.00343 * 359.97438 * 13 11 10 16 16 H 1.48507 * 109.47157 * 89.99911 * 15 13 11 17 17 H 1.48499 * 109.47277 * 210.00249 * 15 13 11 18 18 H 1.48502 * 109.47158 * 329.99901 * 15 13 11 19 19 C 1.47008 * 110.75184 * 58.61581 * 5 4 2 20 20 C 1.53096 * 109.25915 * 301.38647 * 19 5 4 21 21 H 1.08999 * 109.50654 * 296.91613 * 20 19 5 22 22 C 1.53000 * 109.54263 * 176.80441 * 20 19 5 23 23 C 1.53002 * 117.50233 * 248.72829 * 22 20 19 24 24 C 1.52992 * 60.00100 * 252.51167 * 23 22 20 25 25 O 1.43014 * 109.26207 * 56.85002 * 20 19 5 26 26 H 1.08998 * 109.46725 * 180.10281 * 1 2 3 27 27 H 1.08998 * 109.47260 * 300.10733 * 1 2 3 28 28 H 1.08996 * 109.47043 * 60.10717 * 1 2 3 29 29 H 1.08995 * 109.50991 * 183.02259 * 4 2 1 30 30 H 1.09006 * 109.50538 * 303.15426 * 4 2 1 31 31 H 1.08997 * 109.46958 * 302.46547 * 6 5 4 32 32 H 1.09000 * 109.47378 * 62.46587 * 6 5 4 33 33 H 1.08999 * 109.46980 * 53.00756 * 8 7 6 34 34 H 1.08996 * 109.47266 * 173.01152 * 8 7 6 35 35 H 1.09001 * 109.46841 * 293.01329 * 8 7 6 36 36 H 1.08995 * 109.47877 * 71.64235 * 9 7 6 37 37 H 1.09003 * 109.47180 * 191.65214 * 9 7 6 38 38 H 1.09009 * 109.47069 * 311.64254 * 9 7 6 39 39 H 1.09004 * 109.47018 * 299.99843 * 10 7 6 40 40 H 1.08997 * 109.47504 * 60.00436 * 10 7 6 41 41 H 0.96998 * 119.99624 * 179.97438 * 14 13 11 42 42 H 1.09000 * 109.50714 * 181.45142 * 19 5 4 43 43 H 1.09000 * 109.50665 * 61.32005 * 19 5 4 44 44 H 1.08998 * 115.54906 * 34.43875 * 22 20 19 45 45 H 1.09000 * 117.49141 * 0.02562 * 23 22 20 46 46 H 1.08998 * 117.50080 * 145.01805 * 23 22 20 47 47 H 1.08997 * 117.49845 * 252.50441 * 24 23 22 48 48 H 1.09006 * 117.50100 * 107.48690 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8946 1.0272 0.0000 4 6 2.0413 -0.7240 1.2483 5 7 1.6110 -2.1291 1.2043 6 6 2.0335 -2.8472 2.4142 7 6 1.6227 -4.3169 2.3045 8 6 0.2763 -4.4178 1.5849 9 6 2.6829 -5.0851 1.5129 10 6 1.4981 -4.9175 3.7062 11 6 1.0940 -6.3654 3.5981 12 1 0.9409 -6.8123 2.6270 13 6 0.9187 -7.1191 4.7392 14 7 0.5656 -8.3825 4.6450 15 14 1.1828 -6.3460 6.4191 16 1 -0.0959 -5.7671 6.9041 17 1 1.6502 -7.3833 7.3735 18 1 2.2041 -5.2729 6.3151 19 6 2.1186 -2.7916 -0.0059 20 6 1.6066 -2.0469 -1.2417 21 1 0.5188 -2.1064 -1.2778 22 6 2.1952 -2.6827 -2.5027 23 6 3.2132 -1.8630 -3.2981 24 6 1.8021 -2.0740 -3.8502 25 8 2.0076 -0.6762 -1.1663 26 1 -0.3633 -1.0277 0.0018 27 1 -0.3634 0.5155 0.8890 28 1 -0.3633 0.5122 -0.8909 29 1 3.1299 -0.6774 1.2759 30 1 1.6331 -0.2461 2.1390 31 1 3.1165 -2.7794 2.5173 32 1 1.5568 -2.4008 3.2868 33 1 0.3295 -3.8812 0.6376 34 1 0.0427 -5.4656 1.3963 35 1 -0.5025 -3.9784 2.2081 36 1 3.5831 -5.1905 2.1183 37 1 2.2999 -6.0729 1.2563 38 1 2.9210 -4.5394 0.5998 39 1 2.4574 -4.8457 4.2188 40 1 0.7428 -4.3703 4.2702 41 1 0.4427 -8.9129 5.4477 42 1 1.7669 -3.8230 -0.0309 43 1 3.2085 -2.7781 0.0016 44 1 2.3400 -3.7622 -2.4612 45 1 3.4639 -0.8709 -2.9226 46 1 4.0282 -2.4031 -3.7798 47 1 1.6887 -2.7530 -4.6953 48 1 1.1241 -1.2206 -3.8384 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000376019249.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:43 Heat of formation + Delta-G solvation = -6.374519 kcal Electronic energy + Delta-G solvation = -24066.703014 eV Core-core repulsion = 20930.018390 eV Total energy + Delta-G solvation = -3136.684624 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 2.20 seconds Orbital eigenvalues (eV) -40.39668 -37.86611 -36.70607 -34.24823 -32.33764 -31.73269 -29.44122 -27.88810 -26.60009 -26.32890 -24.91605 -23.07180 -22.41385 -22.14289 -20.66055 -19.25163 -17.92384 -16.89309 -16.74218 -16.06560 -15.51383 -15.27282 -14.76766 -14.52883 -14.23604 -13.94338 -13.79466 -13.22505 -12.96766 -12.74849 -12.57118 -12.30731 -12.03048 -11.80692 -11.60660 -11.49597 -11.37717 -11.26752 -11.04762 -10.84643 -10.78234 -10.53923 -10.49300 -10.36065 -10.21783 -10.07326 -9.81359 -9.68551 -9.54530 -8.99573 -8.87608 -8.49334 -8.10818 -5.99694 -3.95740 3.32251 3.39913 3.43100 3.58079 3.79655 4.01646 4.48535 4.62747 4.79905 4.88605 4.93143 5.04434 5.10992 5.26926 5.33427 5.35676 5.40004 5.44331 5.53325 5.59502 5.60690 5.69002 5.78382 5.81525 5.85265 5.89521 5.97753 6.05604 6.08849 6.16951 6.19533 6.25234 6.33004 6.33264 6.49783 6.70083 6.81640 7.05693 7.11237 7.12563 7.19938 7.24359 7.28167 7.32484 7.51059 7.85425 8.60156 9.06366 9.63638 11.13557 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.025662 B = 0.004388 C = 0.004016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.853633 B = 6378.812966 C = 6971.294632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.093 3.907 3 H 0.099 0.901 4 C 0.021 3.979 5 N -0.525 5.525 6 C 0.063 3.937 7 C -0.050 4.050 8 C -0.124 4.124 9 C -0.149 4.149 10 C -0.002 4.002 11 C -0.506 4.506 12 H 0.077 0.923 13 C 0.065 3.935 14 N -0.906 5.906 15 Si 0.875 3.125 16 H -0.278 1.278 17 H -0.290 1.290 18 H -0.267 1.267 19 C 0.009 3.991 20 C 0.120 3.880 21 H 0.072 0.928 22 C -0.153 4.153 23 C -0.166 4.166 24 C -0.174 4.174 25 O -0.378 6.378 26 H 0.075 0.925 27 H 0.062 0.938 28 H 0.053 0.947 29 H 0.037 0.963 30 H 0.082 0.918 31 H 0.027 0.973 32 H 0.071 0.929 33 H 0.052 0.948 34 H 0.055 0.945 35 H 0.044 0.956 36 H 0.044 0.956 37 H 0.063 0.937 38 H 0.049 0.951 39 H 0.012 0.988 40 H 0.011 0.989 41 H 0.261 0.739 42 H 0.118 0.882 43 H 0.039 0.961 44 H 0.116 0.884 45 H 0.103 0.897 46 H 0.088 0.912 47 H 0.091 0.909 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.943 16.403 -12.812 21.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.035 3.965 3 H 0.117 0.883 4 C -0.107 4.107 5 N -0.249 5.249 6 C -0.064 4.064 7 C -0.050 4.050 8 C -0.181 4.181 9 C -0.205 4.205 10 C -0.039 4.039 11 C -0.544 4.544 12 H 0.095 0.905 13 C -0.136 4.136 14 N -0.546 5.546 15 Si 0.703 3.297 16 H -0.204 1.204 17 H -0.216 1.216 18 H -0.192 1.192 19 C -0.118 4.118 20 C 0.062 3.938 21 H 0.090 0.910 22 C -0.172 4.172 23 C -0.203 4.203 24 C -0.211 4.211 25 O -0.298 6.298 26 H 0.094 0.906 27 H 0.081 0.919 28 H 0.072 0.928 29 H 0.055 0.945 30 H 0.100 0.900 31 H 0.046 0.954 32 H 0.090 0.910 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.082 0.918 38 H 0.068 0.932 39 H 0.030 0.970 40 H 0.029 0.971 41 H 0.071 0.929 42 H 0.136 0.864 43 H 0.057 0.943 44 H 0.134 0.866 45 H 0.121 0.879 46 H 0.107 0.893 47 H 0.110 0.890 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.507 16.330 -12.848 20.929 hybrid contribution 0.889 0.146 1.498 1.748 sum 3.396 16.477 -11.351 20.294 Atomic orbital electron populations 1.22277 0.95632 1.03737 1.01587 1.22194 0.94312 0.95462 0.84515 0.88349 1.22762 0.98267 0.90727 0.98967 1.62335 1.59018 1.00942 1.02587 1.22352 0.97327 0.95504 0.91205 1.20433 0.95535 0.90787 0.98280 1.21827 0.95940 1.01131 0.99171 1.22296 0.98547 1.00931 0.98760 1.19655 0.96045 0.96945 0.91297 1.21127 1.45371 0.93217 0.94676 0.90535 1.25012 0.94913 0.94712 0.98925 1.69910 1.48544 1.07230 1.28873 0.86854 0.78905 0.79220 0.84722 1.20434 1.21591 1.19210 1.23427 0.97939 1.00898 0.89558 1.21615 0.98333 0.81254 0.92593 0.91031 1.22296 1.04992 0.98824 0.91066 1.22827 0.92340 1.02188 1.02928 1.22903 0.98879 1.03151 0.96150 1.87962 1.75580 1.23374 1.42839 0.90633 0.91884 0.92785 0.94504 0.90009 0.95434 0.91010 0.92888 0.92634 0.93695 0.93658 0.91761 0.93222 0.97007 0.97104 0.92913 0.86411 0.94270 0.86588 0.87867 0.89343 0.89021 0.88793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.84 8.89 37.16 0.33 -1.51 16 2 C 0.09 1.02 3.92 -26.68 -0.10 0.92 16 3 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 4 C 0.02 0.26 5.08 -3.71 -0.02 0.24 16 5 N -0.52 -7.37 3.20 -234.31 -0.75 -8.12 16 6 C 0.06 1.03 4.61 -3.82 -0.02 1.01 16 7 C -0.05 -0.95 0.52 -154.51 -0.08 -1.03 16 8 C -0.12 -2.29 7.42 37.15 0.28 -2.02 16 9 C -0.15 -2.71 7.44 37.16 0.28 -2.43 16 10 C 0.00 -0.04 2.96 -27.88 -0.08 -0.12 16 11 C -0.51 -13.91 8.39 -34.44 -0.29 -14.20 16 12 H 0.08 2.24 6.01 -52.49 -0.32 1.93 16 13 C 0.06 1.87 5.47 -17.82 -0.10 1.77 16 14 N -0.91 -27.75 13.96 55.43 0.77 -26.98 16 15 Si 0.88 21.77 27.47 -169.99 -4.67 17.10 16 16 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 17 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 18 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 19 C 0.01 0.12 2.42 -3.72 -0.01 0.11 16 20 C 0.12 1.46 2.76 -26.68 -0.07 1.38 16 21 H 0.07 0.91 6.49 -51.93 -0.34 0.57 16 22 C -0.15 -1.67 5.71 -90.62 -0.52 -2.19 16 23 C -0.17 -1.70 9.87 -26.73 -0.26 -1.96 16 24 C -0.17 -1.69 10.19 -26.74 -0.27 -1.96 16 25 O -0.38 -4.67 8.64 -35.23 -0.30 -4.97 16 26 H 0.07 0.92 6.13 -51.93 -0.32 0.60 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.03 0.45 7.92 -51.93 -0.41 0.04 16 32 H 0.07 1.19 7.91 -51.93 -0.41 0.78 16 33 H 0.05 0.86 4.72 -51.93 -0.25 0.61 16 34 H 0.05 1.14 6.79 -51.93 -0.35 0.79 16 35 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.04 0.85 8.10 -51.93 -0.42 0.43 16 37 H 0.06 1.28 6.94 -51.93 -0.36 0.92 16 38 H 0.05 0.77 4.08 -51.92 -0.21 0.56 16 39 H 0.01 0.28 7.20 -51.93 -0.37 -0.09 16 40 H 0.01 0.25 7.55 -51.93 -0.39 -0.14 16 41 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 42 H 0.12 1.70 3.46 -51.93 -0.18 1.52 16 43 H 0.04 0.56 7.64 -51.93 -0.40 0.17 16 44 H 0.12 1.21 8.12 -51.93 -0.42 0.79 16 45 H 0.10 1.15 7.06 -51.93 -0.37 0.79 16 46 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 47 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 48 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 347.36 15.07 5.23 5.23 Total: -1.00 -29.39 347.36 -9.14 -38.53 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -8.48 Total: 1.19 kcal Atomic # 6 Polarization: -21.03 SS G_CDS: -0.95 Total: -21.98 kcal Atomic # 7 Polarization: -35.13 SS G_CDS: 0.02 Total: -35.10 kcal Atomic # 8 Polarization: -4.67 SS G_CDS: -0.30 Total: -4.97 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.67 Total: 17.10 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.39 -9.14 -38.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000376019249.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.157 kcal (2) G-P(sol) polarization free energy of solvation -29.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.20 seconds