Wall clock time and date at job start Tue Mar 31 2020 05:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.54253 * 2 1 4 4 C 1.53095 * 109.50720 * 120.11293 * 2 1 3 5 5 N 1.47017 * 109.26087 * 63.08588 * 4 2 1 6 6 C 1.46898 * 111.00134 * 182.39786 * 5 4 2 7 7 C 1.53002 * 109.46833 * 182.46838 * 6 5 4 8 8 C 1.52994 * 109.47477 * 324.02605 * 7 6 5 9 9 C 1.52999 * 109.47053 * 84.02925 * 7 6 5 10 10 C 1.53002 * 109.46748 * 204.02408 * 7 6 5 11 11 C 1.50706 * 109.46691 * 180.02562 * 10 7 6 12 12 H 1.07994 * 120.00343 * 359.97438 * 11 10 7 13 13 C 1.37878 * 119.99540 * 180.02562 * 11 10 7 14 14 N 1.31517 * 119.99610 * 179.97438 * 13 11 10 15 15 Si 1.86797 * 120.00343 * 359.97438 * 13 11 10 16 16 H 1.48507 * 109.47157 * 89.99911 * 15 13 11 17 17 H 1.48499 * 109.47277 * 210.00249 * 15 13 11 18 18 H 1.48502 * 109.47158 * 329.99901 * 15 13 11 19 19 C 1.47008 * 110.75184 * 58.61581 * 5 4 2 20 20 C 1.53096 * 109.25915 * 301.38647 * 19 5 4 21 21 H 1.08999 * 109.50654 * 296.91613 * 20 19 5 22 22 C 1.53000 * 109.54263 * 176.80441 * 20 19 5 23 23 C 1.53002 * 117.50233 * 248.72829 * 22 20 19 24 24 C 1.52992 * 60.00100 * 252.51167 * 23 22 20 25 25 O 1.43014 * 109.26207 * 56.85002 * 20 19 5 26 26 H 1.08998 * 109.46725 * 180.10281 * 1 2 3 27 27 H 1.08998 * 109.47260 * 300.10733 * 1 2 3 28 28 H 1.08996 * 109.47043 * 60.10717 * 1 2 3 29 29 H 1.08995 * 109.50991 * 183.02259 * 4 2 1 30 30 H 1.09006 * 109.50538 * 303.15426 * 4 2 1 31 31 H 1.08997 * 109.46958 * 302.46547 * 6 5 4 32 32 H 1.09000 * 109.47378 * 62.46587 * 6 5 4 33 33 H 1.08999 * 109.46980 * 53.00756 * 8 7 6 34 34 H 1.08996 * 109.47266 * 173.01152 * 8 7 6 35 35 H 1.09001 * 109.46841 * 293.01329 * 8 7 6 36 36 H 1.08995 * 109.47877 * 71.64235 * 9 7 6 37 37 H 1.09003 * 109.47180 * 191.65214 * 9 7 6 38 38 H 1.09009 * 109.47069 * 311.64254 * 9 7 6 39 39 H 1.09004 * 109.47018 * 299.99843 * 10 7 6 40 40 H 1.08997 * 109.47504 * 60.00436 * 10 7 6 41 41 H 0.96998 * 119.99624 * 179.97438 * 14 13 11 42 42 H 1.09000 * 109.50714 * 181.45142 * 19 5 4 43 43 H 1.09000 * 109.50665 * 61.32005 * 19 5 4 44 44 H 1.08998 * 115.54906 * 34.43875 * 22 20 19 45 45 H 1.09000 * 117.49141 * 0.02562 * 23 22 20 46 46 H 1.08998 * 117.50080 * 145.01805 * 23 22 20 47 47 H 1.08997 * 117.49845 * 252.50441 * 24 23 22 48 48 H 1.09006 * 117.50100 * 107.48690 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8946 1.0272 0.0000 4 6 2.0413 -0.7240 1.2483 5 7 1.6110 -2.1291 1.2043 6 6 2.0335 -2.8472 2.4142 7 6 1.6227 -4.3169 2.3045 8 6 0.2763 -4.4178 1.5849 9 6 2.6829 -5.0851 1.5129 10 6 1.4981 -4.9175 3.7062 11 6 1.0940 -6.3654 3.5981 12 1 0.9409 -6.8123 2.6270 13 6 0.9187 -7.1191 4.7392 14 7 0.5656 -8.3825 4.6450 15 14 1.1828 -6.3460 6.4191 16 1 -0.0959 -5.7671 6.9041 17 1 1.6502 -7.3833 7.3735 18 1 2.2041 -5.2729 6.3151 19 6 2.1186 -2.7916 -0.0059 20 6 1.6066 -2.0469 -1.2417 21 1 0.5188 -2.1064 -1.2778 22 6 2.1952 -2.6827 -2.5027 23 6 3.2132 -1.8630 -3.2981 24 6 1.8021 -2.0740 -3.8502 25 8 2.0076 -0.6762 -1.1663 26 1 -0.3633 -1.0277 0.0018 27 1 -0.3634 0.5155 0.8890 28 1 -0.3633 0.5122 -0.8909 29 1 3.1299 -0.6774 1.2759 30 1 1.6331 -0.2461 2.1390 31 1 3.1165 -2.7794 2.5173 32 1 1.5568 -2.4008 3.2868 33 1 0.3295 -3.8812 0.6376 34 1 0.0427 -5.4656 1.3963 35 1 -0.5025 -3.9784 2.2081 36 1 3.5831 -5.1905 2.1183 37 1 2.2999 -6.0729 1.2563 38 1 2.9210 -4.5394 0.5998 39 1 2.4574 -4.8457 4.2188 40 1 0.7428 -4.3703 4.2702 41 1 0.4427 -8.9129 5.4477 42 1 1.7669 -3.8230 -0.0309 43 1 3.2085 -2.7781 0.0016 44 1 2.3400 -3.7622 -2.4612 45 1 3.4639 -0.8709 -2.9226 46 1 4.0282 -2.4031 -3.7798 47 1 1.6887 -2.7530 -4.6953 48 1 1.1241 -1.2206 -3.8384 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000376019249.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:38 Heat of formation + Delta-G solvation = -22.646679 kcal Electronic energy + Delta-G solvation = -24067.408627 eV Core-core repulsion = 20930.018390 eV Total energy + Delta-G solvation = -3137.390238 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 4.04 seconds Orbital eigenvalues (eV) -41.45220 -39.14101 -37.60829 -35.66516 -34.18404 -32.85039 -30.47775 -29.76822 -28.02965 -27.59241 -26.08903 -24.41756 -23.65811 -23.18070 -21.64633 -20.24420 -19.46146 -18.84710 -17.83101 -17.08981 -16.61193 -16.39158 -16.19135 -15.66092 -15.58833 -15.20053 -15.05597 -14.64471 -14.50927 -14.22646 -13.91872 -13.64220 -13.29423 -13.07675 -12.85031 -12.70387 -12.60438 -12.32012 -12.26913 -12.22945 -12.13661 -12.04582 -11.88133 -11.72282 -11.62853 -11.37947 -11.21506 -11.05728 -10.86795 -10.70402 -10.68993 -10.18925 -9.23637 -8.22044 -6.22307 1.35379 1.36842 1.47692 2.39088 2.72096 2.82074 3.06135 3.13200 3.72312 3.88510 3.98634 4.06475 4.10598 4.11960 4.20558 4.25897 4.29267 4.36541 4.42760 4.50969 4.56082 4.68789 4.73654 4.79510 4.81179 4.86867 4.87325 4.95834 5.00126 5.03072 5.06408 5.08507 5.15718 5.18647 5.30452 5.34833 5.39814 5.43395 5.47634 5.53110 5.60127 5.73802 5.78716 6.06537 6.12235 6.31837 6.41265 6.84896 7.40336 8.94277 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.025662 B = 0.004388 C = 0.004016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.853633 B = 6378.812966 C = 6971.294632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.092 3.908 3 H 0.121 0.879 4 C 0.021 3.979 5 N -0.527 5.527 6 C 0.073 3.927 7 C -0.049 4.049 8 C -0.112 4.112 9 C -0.142 4.142 10 C 0.000 4.000 11 C -0.503 4.503 12 H 0.043 0.957 13 C 0.002 3.998 14 N -0.954 5.954 15 Si 0.940 3.060 16 H -0.270 1.270 17 H -0.289 1.289 18 H -0.250 1.250 19 C 0.012 3.988 20 C 0.126 3.874 21 H 0.067 0.933 22 C -0.168 4.168 23 C -0.164 4.164 24 C -0.164 4.164 25 O -0.384 6.384 26 H 0.057 0.943 27 H 0.072 0.928 28 H 0.060 0.940 29 H 0.035 0.965 30 H 0.093 0.907 31 H 0.031 0.969 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.025 0.975 35 H 0.037 0.963 36 H 0.038 0.962 37 H 0.037 0.963 38 H 0.079 0.921 39 H 0.011 0.989 40 H 0.012 0.988 41 H 0.262 0.738 42 H 0.106 0.894 43 H 0.034 0.966 44 H 0.119 0.881 45 H 0.094 0.906 46 H 0.099 0.901 47 H 0.106 0.894 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.524 19.113 -13.082 23.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.034 3.966 3 H 0.138 0.862 4 C -0.107 4.107 5 N -0.251 5.251 6 C -0.054 4.054 7 C -0.049 4.049 8 C -0.170 4.170 9 C -0.199 4.199 10 C -0.038 4.038 11 C -0.541 4.541 12 H 0.062 0.938 13 C -0.194 4.194 14 N -0.596 5.596 15 Si 0.765 3.235 16 H -0.196 1.196 17 H -0.215 1.215 18 H -0.174 1.174 19 C -0.116 4.116 20 C 0.069 3.931 21 H 0.085 0.915 22 C -0.186 4.186 23 C -0.201 4.201 24 C -0.201 4.201 25 O -0.304 6.304 26 H 0.076 0.924 27 H 0.091 0.909 28 H 0.079 0.921 29 H 0.053 0.947 30 H 0.112 0.888 31 H 0.049 0.951 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.044 0.956 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.056 0.944 38 H 0.098 0.902 39 H 0.029 0.971 40 H 0.031 0.969 41 H 0.071 0.929 42 H 0.124 0.876 43 H 0.052 0.948 44 H 0.137 0.863 45 H 0.112 0.888 46 H 0.118 0.882 47 H 0.124 0.876 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.092 19.066 -13.132 23.357 hybrid contribution 0.693 -0.700 1.487 1.784 sum 3.785 18.366 -11.645 22.074 Atomic orbital electron populations 1.22221 0.95236 1.02770 1.02466 1.22361 0.94619 0.96160 0.83456 0.86171 1.22851 0.98264 0.89316 1.00238 1.62300 1.59137 1.01940 1.01767 1.22114 0.97450 0.93426 0.92443 1.20350 0.95950 0.92822 0.95793 1.21721 0.95535 0.99414 1.00285 1.22244 0.97798 0.99881 0.99951 1.19621 0.95591 0.94427 0.94132 1.21413 1.44080 0.95342 0.93276 0.93847 1.25907 0.95041 0.95136 1.03290 1.70065 1.50595 1.08969 1.30000 0.85809 0.79488 0.78672 0.79561 1.19562 1.21480 1.17364 1.23345 0.97563 1.00497 0.90162 1.21510 0.98002 0.81267 0.92358 0.91534 1.22334 1.06062 0.99036 0.91203 1.22837 0.92902 1.01642 1.02702 1.22952 0.98390 1.03030 0.95746 1.87970 1.75734 1.23240 1.43420 0.92445 0.90881 0.92078 0.94698 0.88824 0.95106 0.90820 0.90366 0.95594 0.94416 0.94326 0.94432 0.90236 0.97062 0.96930 0.92913 0.87644 0.94776 0.86336 0.88751 0.88230 0.87600 0.88981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.13 8.89 71.98 0.64 -2.49 16 2 C 0.09 1.75 3.92 30.63 0.12 1.87 16 3 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 4 C 0.02 0.46 5.08 86.31 0.44 0.90 16 5 N -0.53 -13.76 3.20 -895.23 -2.86 -16.62 16 6 C 0.07 2.25 4.61 86.30 0.40 2.65 16 7 C -0.05 -1.83 0.52 -52.18 -0.03 -1.85 16 8 C -0.11 -4.19 7.42 71.98 0.53 -3.66 16 9 C -0.14 -5.19 7.44 71.98 0.54 -4.65 16 10 C 0.00 0.00 2.96 29.85 0.09 0.09 16 11 C -0.50 -28.33 8.39 25.60 0.21 -28.12 16 12 H 0.04 2.68 6.01 -2.91 -0.02 2.66 16 13 C 0.00 0.12 5.47 84.65 0.46 0.58 16 14 N -0.95 -60.17 13.96 21.45 0.30 -59.87 16 15 Si 0.94 44.84 27.47 68.60 1.88 46.72 16 16 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 17 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 18 H -0.25 -11.12 6.54 99.48 0.65 -10.47 16 19 C 0.01 0.30 2.42 86.31 0.21 0.51 16 20 C 0.13 2.86 2.76 30.63 0.08 2.94 16 21 H 0.07 1.58 6.49 -2.39 -0.02 1.57 16 22 C -0.17 -3.38 5.71 -10.79 -0.06 -3.44 16 23 C -0.16 -3.03 9.87 30.59 0.30 -2.72 16 24 C -0.16 -2.84 10.19 30.59 0.31 -2.53 16 25 O -0.38 -8.60 8.64 -148.98 -1.29 -9.88 16 26 H 0.06 1.28 6.13 -2.39 -0.01 1.27 16 27 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 31 H 0.03 0.93 7.92 -2.39 -0.02 0.91 16 32 H 0.07 2.26 7.91 -2.39 -0.02 2.24 16 33 H 0.08 2.49 4.72 -2.39 -0.01 2.48 16 34 H 0.02 1.09 6.79 -2.39 -0.02 1.07 16 35 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.04 1.43 8.10 -2.39 -0.02 1.41 16 37 H 0.04 1.54 6.94 -2.39 -0.02 1.53 16 38 H 0.08 2.41 4.08 -2.38 -0.01 2.40 16 39 H 0.01 0.52 7.20 -2.39 -0.02 0.50 16 40 H 0.01 0.57 7.55 -2.39 -0.02 0.56 16 41 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 42 H 0.11 2.93 3.46 -2.39 -0.01 2.92 16 43 H 0.03 0.92 7.64 -2.39 -0.02 0.90 16 44 H 0.12 2.31 8.12 -2.39 -0.02 2.29 16 45 H 0.09 1.93 7.06 -2.39 -0.02 1.91 16 46 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 47 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 48 H 0.09 1.64 8.14 -2.38 -0.02 1.62 16 Total: -1.00 -63.86 347.36 3.15 -60.71 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: 0.86 Total: 18.88 kcal Atomic # 6 Polarization: -44.18 SS G_CDS: 4.25 Total: -39.93 kcal Atomic # 7 Polarization: -73.94 SS G_CDS: -2.56 Total: -76.50 kcal Atomic # 8 Polarization: -8.60 SS G_CDS: -1.29 Total: -9.88 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 1.88 Total: 46.72 kcal Total: -63.86 3.15 -60.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000376019249.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.061 kcal (2) G-P(sol) polarization free energy of solvation -63.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.04 seconds