Wall clock time and date at job start Tue Mar 31 2020 05:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.50185 * 2 1 4 4 C 1.53099 * 109.50734 * 120.08657 * 2 1 3 5 5 N 1.47012 * 109.25623 * 176.78636 * 4 2 1 6 6 C 1.46898 * 110.99848 * 177.60846 * 5 4 2 7 7 C 1.52997 * 109.47199 * 271.63233 * 6 5 4 8 8 C 1.53007 * 109.46569 * 57.63421 * 7 6 5 9 9 C 1.53000 * 109.47292 * 177.63152 * 7 6 5 10 10 C 1.53001 * 109.47371 * 297.63676 * 7 6 5 11 11 C 1.50702 * 109.47000 * 179.97438 * 10 7 6 12 12 H 1.07995 * 120.00177 * 359.97438 * 11 10 7 13 13 C 1.37875 * 119.99824 * 180.02562 * 11 10 7 14 14 N 1.31513 * 120.00038 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99989 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47380 * 89.99661 * 15 13 11 17 17 H 1.48494 * 109.47151 * 209.99728 * 15 13 11 18 18 H 1.48503 * 109.47209 * 329.99890 * 15 13 11 19 19 C 1.47017 * 110.75099 * 301.38464 * 5 4 2 20 20 C 1.53101 * 109.25921 * 58.61693 * 19 5 4 21 21 H 1.09006 * 109.50377 * 63.12792 * 20 19 5 22 22 C 1.52999 * 109.50473 * 183.21594 * 20 19 5 23 23 C 1.52998 * 117.49723 * 248.74768 * 22 20 19 24 24 C 1.52997 * 117.49602 * 180.08801 * 22 20 19 25 25 O 1.43009 * 109.25657 * 303.15076 * 20 19 5 26 26 H 1.09003 * 109.47067 * 299.91145 * 1 2 3 27 27 H 1.09004 * 109.47056 * 179.91481 * 1 2 3 28 28 H 1.08993 * 109.47223 * 59.91212 * 1 2 3 29 29 H 1.08995 * 109.50660 * 296.71939 * 4 2 1 30 30 H 1.09000 * 109.50273 * 56.85161 * 4 2 1 31 31 H 1.08993 * 109.47315 * 31.63752 * 6 5 4 32 32 H 1.09003 * 109.46964 * 151.63794 * 6 5 4 33 33 H 1.08999 * 109.47091 * 49.05928 * 8 7 6 34 34 H 1.09004 * 109.46647 * 169.05076 * 8 7 6 35 35 H 1.08992 * 109.47371 * 289.04911 * 8 7 6 36 36 H 1.08997 * 109.46910 * 65.85472 * 9 7 6 37 37 H 1.08997 * 109.47269 * 185.85032 * 9 7 6 38 38 H 1.08999 * 109.47515 * 305.85462 * 9 7 6 39 39 H 1.08997 * 109.46826 * 299.99644 * 10 7 6 40 40 H 1.09004 * 109.46909 * 59.99753 * 10 7 6 41 41 H 0.97002 * 119.99590 * 180.02562 * 14 13 11 42 42 H 1.09007 * 109.50154 * 178.55269 * 19 5 4 43 43 H 1.08994 * 109.50943 * 298.63703 * 19 5 4 44 44 H 1.09001 * 115.55186 * 34.41458 * 22 20 19 45 45 H 1.09007 * 117.50340 * 359.97438 * 23 22 20 46 46 H 1.08994 * 117.50465 * 145.02281 * 23 22 20 47 47 H 1.08995 * 117.49849 * 214.97755 * 24 22 20 48 48 H 1.09000 * 117.49909 * 359.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0413 -0.7234 1.2487 5 7 3.5093 -0.7879 1.2047 6 6 4.0447 -1.4259 2.4148 7 6 4.2682 -0.3650 3.4944 8 6 2.9498 0.3568 3.7806 9 6 4.7699 -1.0372 4.7739 10 6 5.3082 0.6464 3.0081 11 6 5.5278 1.6916 4.0712 12 1 4.9801 1.6400 5.0006 13 6 6.4272 2.7145 3.8570 14 7 7.0938 2.7776 2.7251 15 14 6.6989 4.0105 5.1745 16 1 7.7910 3.5736 6.0809 17 1 7.0723 5.2970 4.5337 18 1 5.4493 4.1913 5.9563 19 6 3.9640 -1.4883 -0.0053 20 6 3.4334 -0.7571 -1.2414 21 1 3.8540 0.2478 -1.2782 22 6 3.8358 -1.5259 -2.5015 23 6 4.8670 -0.8762 -3.4263 24 6 3.3980 -0.9507 -3.8499 25 8 2.0076 -0.6766 -1.1659 26 1 -0.3633 0.5125 0.8908 27 1 -0.3633 -1.0277 -0.0015 28 1 -0.3633 0.5152 -0.8891 29 1 1.7274 -0.1787 2.1390 30 1 1.6332 -1.7338 1.2766 31 1 3.3354 -2.1696 2.7776 32 1 4.9922 -1.9112 2.1808 33 1 2.1601 -0.3779 3.9378 34 1 3.0583 0.9704 4.6750 35 1 2.6918 0.9920 2.9333 36 1 5.7577 -1.4627 4.5975 37 1 4.8300 -0.2983 5.5730 38 1 4.0794 -1.8295 5.0629 39 1 6.2473 0.1322 2.8041 40 1 4.9506 1.1253 2.0965 41 1 7.7268 3.4970 2.5745 42 1 5.0537 -1.5018 -0.0301 43 1 3.5874 -2.5111 0.0030 44 1 3.8621 -2.6111 -2.4019 45 1 5.2586 0.0992 -3.1372 46 1 5.5715 -1.5338 -3.9355 47 1 3.1366 -1.6573 -4.6376 48 1 2.8229 -0.0247 -3.8392 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000376019250.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:52 Heat of formation + Delta-G solvation = -27.916487 kcal Electronic energy + Delta-G solvation = -23819.067323 eV Core-core repulsion = 20681.448569 eV Total energy + Delta-G solvation = -3137.618754 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -39.84433 -37.56562 -36.55080 -34.23547 -32.41653 -32.13515 -28.62957 -27.17805 -26.98470 -26.02887 -24.23700 -23.02416 -22.39909 -21.89225 -20.51525 -20.18979 -17.86797 -16.45892 -16.24577 -15.87862 -15.47092 -14.92424 -14.85987 -14.43799 -14.14678 -13.79791 -13.36360 -12.94807 -12.83511 -12.44573 -12.37859 -12.27767 -12.00111 -11.76894 -11.54707 -11.42861 -11.29599 -11.00072 -10.94094 -10.91044 -10.65777 -10.61945 -10.38987 -10.32984 -10.23777 -10.18762 -9.95041 -9.62008 -9.21536 -8.93936 -8.70748 -8.22570 -7.81632 -5.87001 -3.86381 3.36888 3.43684 3.46138 3.46617 4.05049 4.19989 4.54987 4.69975 4.89044 5.02980 5.05484 5.16443 5.30563 5.37008 5.39887 5.48633 5.55750 5.58284 5.64159 5.68663 5.70526 5.77272 5.87735 5.90920 5.97700 6.02188 6.07029 6.12836 6.13509 6.17146 6.21276 6.28574 6.32509 6.40046 6.51569 6.77125 6.79965 7.07907 7.24296 7.32139 7.39619 7.49221 7.55572 7.86160 8.07447 8.22612 8.59954 9.20741 9.75472 11.24283 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.016447 B = 0.004894 C = 0.004409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.056017 B = 5719.972530 C = 6349.140311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.088 3.912 3 H 0.068 0.932 4 C 0.012 3.988 5 N -0.521 5.521 6 C 0.070 3.930 7 C -0.056 4.056 8 C -0.123 4.123 9 C -0.126 4.126 10 C 0.045 3.955 11 C -0.507 4.507 12 H 0.054 0.946 13 C 0.056 3.944 14 N -0.896 5.896 15 Si 0.882 3.118 16 H -0.283 1.283 17 H -0.289 1.289 18 H -0.276 1.276 19 C 0.031 3.969 20 C 0.126 3.874 21 H 0.069 0.931 22 C -0.148 4.148 23 C -0.172 4.172 24 C -0.166 4.166 25 O -0.381 6.381 26 H 0.071 0.929 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.103 0.897 30 H 0.031 0.969 31 H 0.026 0.974 32 H 0.063 0.937 33 H 0.024 0.976 34 H 0.053 0.947 35 H 0.059 0.941 36 H 0.045 0.955 37 H 0.062 0.938 38 H 0.027 0.973 39 H 0.006 0.994 40 H 0.031 0.969 41 H 0.257 0.743 42 H 0.085 0.915 43 H 0.032 0.968 44 H 0.105 0.895 45 H 0.099 0.901 46 H 0.096 0.904 47 H 0.091 0.909 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.820 -9.091 -8.380 15.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.030 3.970 3 H 0.086 0.914 4 C -0.116 4.116 5 N -0.244 5.244 6 C -0.057 4.057 7 C -0.056 4.056 8 C -0.180 4.180 9 C -0.184 4.184 10 C 0.008 3.992 11 C -0.546 4.546 12 H 0.072 0.928 13 C -0.145 4.145 14 N -0.536 5.536 15 Si 0.711 3.289 16 H -0.210 1.210 17 H -0.215 1.215 18 H -0.201 1.201 19 C -0.097 4.097 20 C 0.069 3.931 21 H 0.087 0.913 22 C -0.166 4.166 23 C -0.209 4.209 24 C -0.203 4.203 25 O -0.301 6.301 26 H 0.090 0.910 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.121 0.879 30 H 0.049 0.951 31 H 0.044 0.956 32 H 0.082 0.918 33 H 0.043 0.957 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.064 0.936 37 H 0.081 0.919 38 H 0.046 0.954 39 H 0.024 0.976 40 H 0.050 0.950 41 H 0.066 0.934 42 H 0.104 0.896 43 H 0.050 0.950 44 H 0.123 0.877 45 H 0.117 0.883 46 H 0.114 0.886 47 H 0.110 0.890 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -9.632 -8.583 -8.622 15.517 hybrid contribution 0.223 -0.027 0.995 1.020 sum -9.409 -8.609 -7.626 14.859 Atomic orbital electron populations 1.21721 0.93266 1.02475 1.02410 1.22150 0.94260 0.96055 0.84497 0.91445 1.23228 0.88660 0.99597 1.00099 1.62043 1.07839 1.52827 1.01739 1.22293 0.98051 0.95261 0.90122 1.20601 0.97287 0.95326 0.92433 1.21865 0.95484 0.98863 1.01786 1.21739 0.99240 0.99055 0.98387 1.19030 0.91593 0.92003 0.96577 1.21335 1.22078 1.09209 1.01949 0.92770 1.24979 0.96366 0.97901 0.95206 1.69975 1.26977 1.32784 1.23892 0.86752 0.78335 0.81608 0.82209 1.20956 1.21466 1.20062 1.22738 1.01171 0.95259 0.90524 1.21592 0.81166 0.98303 0.92085 0.91263 1.22121 1.04763 0.99090 0.90646 1.23036 0.92298 1.02746 1.02823 1.22814 0.97281 1.03185 0.97046 1.87916 1.20784 1.78478 1.42881 0.90980 0.92244 0.91896 0.87938 0.95105 0.95622 0.91838 0.95734 0.92758 0.92257 0.93578 0.91897 0.95431 0.97558 0.95029 0.93363 0.89620 0.94955 0.87669 0.88288 0.88557 0.89029 0.88529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.57 37.16 0.36 -1.24 16 2 C 0.09 1.26 3.43 -26.68 -0.09 1.17 16 3 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 4 C 0.01 0.18 4.25 -3.71 -0.02 0.17 16 5 N -0.52 -8.91 3.75 -234.31 -0.88 -9.78 16 6 C 0.07 1.23 4.24 -3.83 -0.02 1.21 16 7 C -0.06 -1.12 0.60 -154.51 -0.09 -1.21 16 8 C -0.12 -2.31 6.34 37.16 0.24 -2.07 16 9 C -0.13 -2.38 8.10 37.16 0.30 -2.08 16 10 C 0.04 1.14 3.88 -27.88 -0.11 1.03 16 11 C -0.51 -13.94 7.82 -34.44 -0.27 -14.21 16 12 H 0.05 1.45 5.75 -52.49 -0.30 1.15 16 13 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 14 N -0.90 -27.00 13.29 55.43 0.74 -26.27 16 15 Si 0.88 21.76 29.54 -169.99 -5.02 16.74 16 16 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 17 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 C 0.03 0.49 4.78 -3.71 -0.02 0.47 16 20 C 0.13 1.85 3.00 -26.68 -0.08 1.77 16 21 H 0.07 1.13 7.90 -51.93 -0.41 0.72 16 22 C -0.15 -1.81 5.39 -90.62 -0.49 -2.30 16 23 C -0.17 -1.88 10.18 -26.69 -0.27 -2.16 16 24 C -0.17 -1.82 10.16 -26.69 -0.27 -2.09 16 25 O -0.38 -5.76 10.03 -35.23 -0.35 -6.11 16 26 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.10 1.56 4.22 -51.93 -0.22 1.34 16 30 H 0.03 0.46 8.11 -51.93 -0.42 0.04 16 31 H 0.03 0.42 7.78 -51.93 -0.40 0.01 16 32 H 0.06 1.12 7.67 -51.93 -0.40 0.72 16 33 H 0.02 0.39 7.35 -51.93 -0.38 0.01 16 34 H 0.05 1.08 6.94 -51.93 -0.36 0.72 16 35 H 0.06 1.15 6.52 -51.93 -0.34 0.82 16 36 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.06 1.26 6.77 -51.93 -0.35 0.90 16 38 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 40 H 0.03 0.87 7.67 -51.93 -0.40 0.47 16 41 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 42 H 0.09 1.35 8.00 -51.92 -0.42 0.93 16 43 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.11 1.21 8.11 -51.93 -0.42 0.79 16 45 H 0.10 1.15 8.05 -51.92 -0.42 0.73 16 46 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 47 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 48 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 363.83 15.07 5.48 5.48 Total: -1.00 -29.82 363.83 -9.99 -39.81 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -9.03 Total: 0.17 kcal Atomic # 6 Polarization: -19.11 SS G_CDS: -0.93 Total: -20.04 kcal Atomic # 7 Polarization: -35.91 SS G_CDS: -0.14 Total: -36.05 kcal Atomic # 8 Polarization: -5.76 SS G_CDS: -0.35 Total: -6.11 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -29.82 -9.99 -39.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000376019250.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.895 kcal (2) G-P(sol) polarization free energy of solvation -29.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds