Wall clock time and date at job start Tue Mar 31 2020 05:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.50539 * 2 1 4 4 C 1.53101 * 109.50361 * 239.91633 * 2 1 3 5 5 N 1.47010 * 109.25929 * 183.17390 * 4 2 1 6 6 C 1.46897 * 111.00166 * 182.39329 * 5 4 2 7 7 C 1.53003 * 109.47074 * 85.04121 * 6 5 4 8 8 C 1.52999 * 109.47264 * 54.06505 * 7 6 5 9 9 C 1.53004 * 109.47161 * 294.06674 * 7 6 5 10 10 C 1.53003 * 109.47149 * 174.06940 * 7 6 5 11 11 C 1.50705 * 109.47105 * 179.97438 * 10 7 6 12 12 H 1.08003 * 120.00038 * 0.02562 * 11 10 7 13 13 C 1.37877 * 119.99638 * 179.97438 * 11 10 7 14 14 N 1.31513 * 120.00344 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99591 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47068 * 180.02562 * 15 13 11 17 17 H 1.48501 * 109.47019 * 300.00061 * 15 13 11 18 18 H 1.48495 * 109.47235 * 60.00081 * 15 13 11 19 19 C 1.47011 * 110.75511 * 58.61505 * 5 4 2 20 20 C 1.53103 * 109.25611 * 301.38759 * 19 5 4 21 21 H 1.08996 * 109.50364 * 296.90770 * 20 19 5 22 22 C 1.53004 * 109.53788 * 176.80160 * 20 19 5 23 23 C 1.53000 * 117.49963 * 248.93755 * 22 20 19 24 24 C 1.53002 * 117.49612 * 180.27958 * 22 20 19 25 25 O 1.43011 * 109.25926 * 56.84897 * 20 19 5 26 26 H 1.08995 * 109.47224 * 180.08442 * 1 2 3 27 27 H 1.09006 * 109.46385 * 300.08167 * 1 2 3 28 28 H 1.08997 * 109.47143 * 60.07902 * 1 2 3 29 29 H 1.09002 * 109.50535 * 63.23533 * 4 2 1 30 30 H 1.09003 * 109.50801 * 303.10970 * 4 2 1 31 31 H 1.08995 * 109.47011 * 325.04182 * 6 5 4 32 32 H 1.08998 * 109.47334 * 205.03812 * 6 5 4 33 33 H 1.09001 * 109.46841 * 179.97438 * 8 7 6 34 34 H 1.08988 * 109.47581 * 299.99969 * 8 7 6 35 35 H 1.09002 * 109.46769 * 60.00834 * 8 7 6 36 36 H 1.09007 * 109.46922 * 315.33245 * 9 7 6 37 37 H 1.09003 * 109.46781 * 75.32768 * 9 7 6 38 38 H 1.08993 * 109.47140 * 195.32963 * 9 7 6 39 39 H 1.09005 * 109.47073 * 59.99797 * 10 7 6 40 40 H 1.08997 * 109.46775 * 299.99902 * 10 7 6 41 41 H 0.96996 * 119.99483 * 359.97438 * 14 13 11 42 42 H 1.09003 * 109.50753 * 61.32131 * 19 5 4 43 43 H 1.09001 * 109.50935 * 181.45009 * 19 5 4 44 44 H 1.08999 * 115.54923 * 34.61469 * 22 20 19 45 45 H 1.09000 * 117.49431 * 0.02562 * 23 22 20 46 46 H 1.09003 * 117.49522 * 145.02382 * 23 22 20 47 47 H 1.08997 * 117.50208 * 214.98171 * 24 22 20 48 48 H 1.09001 * 117.49866 * 0.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0412 -0.7234 -1.2488 5 7 3.5093 -0.7871 -1.2054 6 6 4.0445 -1.4250 -2.4156 7 6 4.1890 -0.3784 -3.5224 8 6 5.0255 0.7951 -3.0085 9 6 2.8035 0.1241 -3.9332 10 6 4.8825 -1.0080 -4.7322 11 6 5.0243 0.0227 -5.8225 12 1 4.6570 1.0264 -5.6679 13 6 5.6240 -0.3157 -7.0171 14 7 6.0718 -1.5378 -7.2052 15 14 5.8004 0.9621 -8.3683 16 1 6.4734 0.3510 -9.5426 17 1 4.4556 1.4495 -8.7673 18 1 6.6119 2.1013 -7.8695 19 6 3.9649 -1.4870 0.0044 20 6 3.4344 -0.7559 1.2406 21 1 3.8538 0.2495 1.2767 22 6 3.8377 -1.5234 2.5013 23 6 2.7261 -2.2135 3.2943 24 6 3.3924 -0.9520 3.8490 25 8 2.0085 -0.6762 1.1658 26 1 -0.3633 -1.0276 0.0015 27 1 -0.3632 0.5152 0.8893 28 1 -0.3633 0.5126 -0.8907 29 1 1.7266 -0.1790 -2.1391 30 1 1.6337 -1.7340 -1.2764 31 1 3.3632 -2.2097 -2.7443 32 1 5.0200 -1.8590 -2.1965 33 1 5.1288 1.5404 -3.7972 34 1 4.5315 1.2436 -2.1467 35 1 6.0126 0.4371 -2.7160 36 1 2.1259 -0.7233 -4.0377 37 1 2.4220 0.8023 -3.1698 38 1 2.8756 0.6513 -4.8844 39 1 4.2866 -1.8441 -5.0982 40 1 5.8696 -1.3660 -4.4395 41 1 5.9805 -2.2011 -6.5034 42 1 3.5882 -2.5098 -0.0031 43 1 5.0545 -1.5000 0.0289 44 1 4.8082 -2.0179 2.4603 45 1 1.7074 -2.1211 2.9176 46 1 2.9653 -3.1620 3.7753 47 1 4.0697 -1.0710 4.6947 48 1 2.8118 -0.0296 3.8374 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000376019252.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:01 Heat of formation + Delta-G solvation = -31.781711 kcal Electronic energy + Delta-G solvation = -23610.012045 eV Core-core repulsion = 20472.225683 eV Total energy + Delta-G solvation = -3137.786363 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.08924 -37.77212 -36.57588 -34.51972 -32.55610 -32.26811 -28.87206 -27.28818 -26.51559 -26.15977 -24.53288 -23.20049 -22.52757 -21.98718 -20.74143 -20.14444 -18.20908 -16.55119 -16.38333 -16.10855 -15.76947 -15.32486 -14.94613 -14.56746 -14.01091 -13.69001 -13.52347 -13.28919 -13.05505 -12.65846 -12.53980 -12.42133 -12.12630 -11.64361 -11.60917 -11.54970 -11.49441 -11.27480 -11.04710 -10.91816 -10.74097 -10.64271 -10.47794 -10.34296 -10.24105 -10.07846 -10.03921 -9.73893 -9.49842 -9.11740 -8.41911 -8.27078 -8.06680 -6.28813 -3.96413 3.46158 3.47740 3.47932 3.66268 3.70922 3.96461 4.54441 4.58973 4.75618 4.83206 4.88833 5.04884 5.13538 5.20298 5.23611 5.38602 5.40255 5.46831 5.51944 5.52601 5.57765 5.64255 5.75231 5.78649 5.84804 5.87677 5.95272 5.98623 6.03551 6.07865 6.14357 6.16262 6.22724 6.45036 6.61695 6.70122 6.79041 7.10038 7.11549 7.17368 7.21484 7.28475 7.34146 7.45561 7.61827 8.30686 8.53595 8.95823 9.74077 11.11043 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.031077 B = 0.003686 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.767013 B = 7595.190330 C = 8029.193765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.091 3.909 3 H 0.064 0.936 4 C 0.008 3.992 5 N -0.528 5.528 6 C 0.065 3.935 7 C -0.045 4.045 8 C -0.113 4.113 9 C -0.133 4.133 10 C 0.020 3.980 11 C -0.587 4.587 12 H 0.053 0.947 13 C 0.012 3.988 14 N -0.917 5.917 15 Si 1.065 2.935 16 H -0.284 1.284 17 H -0.289 1.289 18 H -0.289 1.289 19 C 0.028 3.972 20 C 0.127 3.873 21 H 0.068 0.932 22 C -0.154 4.154 23 C -0.165 4.165 24 C -0.173 4.173 25 O -0.380 6.380 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.106 0.894 30 H 0.035 0.965 31 H 0.032 0.968 32 H 0.064 0.936 33 H 0.054 0.946 34 H 0.045 0.955 35 H 0.035 0.965 36 H 0.034 0.966 37 H 0.043 0.957 38 H 0.069 0.931 39 H 0.002 0.998 40 H 0.004 0.996 41 H 0.267 0.733 42 H 0.038 0.962 43 H 0.082 0.918 44 H 0.114 0.886 45 H 0.104 0.896 46 H 0.088 0.912 47 H 0.091 0.909 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.318 1.423 19.153 20.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.033 3.967 3 H 0.082 0.918 4 C -0.120 4.120 5 N -0.252 5.252 6 C -0.062 4.062 7 C -0.045 4.045 8 C -0.170 4.170 9 C -0.190 4.190 10 C -0.017 4.017 11 C -0.625 4.625 12 H 0.071 0.929 13 C -0.191 4.191 14 N -0.554 5.554 15 Si 0.894 3.106 16 H -0.209 1.209 17 H -0.216 1.216 18 H -0.215 1.215 19 C -0.101 4.101 20 C 0.069 3.931 21 H 0.086 0.914 22 C -0.172 4.172 23 C -0.202 4.202 24 C -0.210 4.210 25 O -0.300 6.300 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.091 0.909 29 H 0.124 0.876 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.062 0.938 38 H 0.088 0.912 39 H 0.020 0.980 40 H 0.022 0.978 41 H 0.078 0.922 42 H 0.056 0.944 43 H 0.100 0.900 44 H 0.132 0.868 45 H 0.123 0.877 46 H 0.107 0.893 47 H 0.110 0.890 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.688 2.058 17.761 19.463 hybrid contribution -0.588 -1.162 1.288 1.832 sum -8.276 0.896 19.049 20.789 Atomic orbital electron populations 1.21733 0.93089 1.02745 1.02464 1.22140 0.94428 0.95661 0.84452 0.91771 1.23287 0.88533 1.00142 1.00058 1.62201 1.08243 1.52767 1.02012 1.22374 0.98536 0.95783 0.89485 1.20424 0.95644 0.94683 0.93798 1.21562 0.98066 0.97878 0.99478 1.22008 0.95948 0.99654 1.01366 1.19254 0.94210 0.96049 0.92203 1.22014 1.42040 0.97887 1.00559 0.92861 1.25781 0.93888 0.99843 0.99626 1.70777 1.44509 1.03412 1.36720 0.83597 0.76350 0.74706 0.75967 1.20947 1.21564 1.21518 1.22748 1.00768 0.96044 0.90535 1.21469 0.81254 0.98134 0.92200 0.91380 1.22281 0.99626 1.04179 0.91154 1.22849 0.98687 0.95879 1.02799 1.22922 1.03786 0.98368 0.95971 1.87898 1.20635 1.78492 1.42988 0.92056 0.91874 0.90869 0.87645 0.94680 0.94927 0.91740 0.92674 0.93613 0.94583 0.94649 0.93847 0.91218 0.97959 0.97752 0.92238 0.94416 0.89957 0.86774 0.87730 0.89342 0.89028 0.88691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.57 37.16 0.36 -1.06 16 2 C 0.09 1.11 3.43 -26.68 -0.09 1.02 16 3 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 4 C 0.01 0.11 4.44 -3.71 -0.02 0.09 16 5 N -0.53 -7.96 3.57 -234.31 -0.84 -8.80 16 6 C 0.07 1.15 4.22 -3.82 -0.02 1.13 16 7 C -0.04 -0.90 0.61 -154.50 -0.09 -1.00 16 8 C -0.11 -2.21 7.94 37.16 0.30 -1.92 16 9 C -0.13 -2.51 6.90 37.16 0.26 -2.25 16 10 C 0.02 0.51 3.35 -27.88 -0.09 0.42 16 11 C -0.59 -16.19 7.43 -34.44 -0.26 -16.45 16 12 H 0.05 1.44 5.80 -52.48 -0.30 1.14 16 13 C 0.01 0.34 5.46 -17.82 -0.10 0.24 16 14 N -0.92 -28.18 13.65 55.43 0.76 -27.43 16 15 Si 1.06 25.35 29.90 -169.99 -5.08 20.27 16 16 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 19 C 0.03 0.37 4.81 -3.71 -0.02 0.35 16 20 C 0.13 1.54 3.16 -26.68 -0.08 1.46 16 21 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 22 C -0.15 -1.58 5.71 -90.62 -0.52 -2.09 16 23 C -0.17 -1.62 9.88 -26.69 -0.26 -1.88 16 24 C -0.17 -1.59 10.19 -26.69 -0.27 -1.87 16 25 O -0.38 -4.85 8.47 -35.23 -0.30 -5.15 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.11 1.50 4.08 -51.93 -0.21 1.29 16 30 H 0.03 0.51 8.11 -51.93 -0.42 0.09 16 31 H 0.03 0.58 7.74 -51.93 -0.40 0.18 16 32 H 0.06 1.14 7.71 -51.93 -0.40 0.74 16 33 H 0.05 1.17 6.62 -51.93 -0.34 0.83 16 34 H 0.04 0.82 7.45 -51.94 -0.39 0.43 16 35 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.03 0.64 7.67 -51.93 -0.40 0.24 16 37 H 0.04 0.72 6.19 -51.93 -0.32 0.40 16 38 H 0.07 1.47 6.27 -51.93 -0.33 1.15 16 39 H 0.00 0.06 8.01 -51.93 -0.42 -0.36 16 40 H 0.00 0.11 8.01 -51.93 -0.42 -0.30 16 41 H 0.27 8.20 7.22 -40.82 -0.29 7.91 16 42 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.08 1.06 8.00 -51.93 -0.42 0.64 16 44 H 0.11 1.06 8.12 -51.93 -0.42 0.63 16 45 H 0.10 1.15 7.07 -51.93 -0.37 0.79 16 46 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 359.48 15.07 5.42 5.42 Total: -1.00 -29.76 359.48 -9.82 -39.58 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -8.87 Total: -0.08 kcal Atomic # 6 Polarization: -22.90 SS G_CDS: -0.91 Total: -23.81 kcal Atomic # 7 Polarization: -36.15 SS G_CDS: -0.08 Total: -36.23 kcal Atomic # 8 Polarization: -4.85 SS G_CDS: -0.30 Total: -5.15 kcal Atomic # 14 Polarization: 25.35 SS G_CDS: -5.08 Total: 20.27 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.76 -9.82 -39.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000376019252.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.803 kcal (2) G-P(sol) polarization free energy of solvation -29.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds