Wall clock time and date at job start Tue Mar 31 2020 06:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.46726 * 2 1 4 4 C 1.42899 * 113.99629 * 180.02562 * 3 2 1 5 5 H 1.09003 * 112.86446 * 338.25148 * 4 3 2 6 6 C 1.53850 * 113.63440 * 109.50723 * 4 3 2 7 7 C 1.53851 * 87.14547 * 139.67042 * 6 4 3 8 8 H 1.09001 * 113.63133 * 220.23654 * 7 6 4 9 9 N 1.46898 * 113.63215 * 89.36788 * 7 6 4 10 10 C 1.46900 * 110.99925 * 104.50549 * 9 7 6 11 11 C 1.53006 * 109.46887 * 180.02562 * 10 9 7 12 12 C 1.50705 * 109.46848 * 180.02562 * 11 10 9 13 13 H 1.08001 * 119.99990 * 359.97438 * 12 11 10 14 14 C 1.37877 * 119.99856 * 179.97438 * 12 11 10 15 15 N 1.31515 * 120.00124 * 179.97438 * 14 12 11 16 16 Si 1.86803 * 119.99958 * 0.02562 * 14 12 11 17 17 H 1.48492 * 109.47513 * 89.99523 * 16 14 12 18 18 H 1.48500 * 109.46742 * 209.99685 * 16 14 12 19 19 H 1.48499 * 109.46777 * 329.99337 * 16 14 12 20 20 C 1.53387 * 86.97748 * 334.84412 * 7 6 4 21 21 C 1.52730 * 113.55851 * 139.80827 * 20 7 6 22 22 C 1.53144 * 109.23373 * 187.47289 * 21 20 7 23 23 C 1.52976 * 109.43257 * 302.16849 * 22 21 20 24 24 C 1.52972 * 109.70246 * 61.68674 * 23 22 21 25 25 C 1.52724 * 113.55651 * 270.63417 * 20 7 6 26 26 H 1.08992 * 109.47399 * 59.99748 * 1 2 3 27 27 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47194 * 299.99575 * 1 2 3 29 29 H 1.09002 * 109.47398 * 120.00244 * 2 1 3 30 30 H 1.09001 * 109.47194 * 240.00425 * 2 1 3 31 31 H 1.09004 * 113.60503 * 254.23742 * 6 4 3 32 32 H 1.08997 * 113.60244 * 25.02083 * 6 4 3 33 33 H 1.00900 * 110.99877 * 340.54869 * 9 7 6 34 34 H 1.09000 * 109.46776 * 299.99732 * 10 9 7 35 35 H 1.08996 * 109.47646 * 59.99743 * 10 9 7 36 36 H 1.09000 * 109.46881 * 299.99285 * 11 10 9 37 37 H 1.08993 * 109.47160 * 59.99669 * 11 10 9 38 38 H 0.96992 * 119.99871 * 180.02562 * 15 14 12 39 39 H 1.08990 * 109.51105 * 307.40558 * 21 20 7 40 40 H 1.09005 * 109.50597 * 67.54902 * 21 20 7 41 41 H 1.08994 * 109.47648 * 182.18032 * 22 21 20 42 42 H 1.08996 * 109.48465 * 62.15768 * 22 21 20 43 43 H 1.08997 * 109.43175 * 301.61565 * 23 22 21 44 44 H 1.09000 * 109.39224 * 181.73891 * 23 22 21 45 45 H 1.08997 * 109.47632 * 178.32099 * 24 23 22 46 46 H 1.08998 * 109.47975 * 58.29742 * 24 23 22 47 47 H 1.08997 * 109.51502 * 292.45351 * 25 20 7 48 48 H 1.09005 * 109.50836 * 52.55287 * 25 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.9268 0.5636 0.3712 6 6 4.0079 1.9783 -1.3293 7 6 4.9877 2.8152 -0.4887 8 1 5.1542 3.8182 -0.8817 9 7 6.2375 2.1129 -0.1685 10 6 7.3467 2.6097 -0.9937 11 6 8.6283 1.8557 -0.6327 12 6 9.7663 2.3658 -1.4788 13 1 9.5928 3.1490 -2.2019 14 6 11.0290 1.8325 -1.3297 15 7 12.0221 2.2773 -2.0684 16 14 11.3290 0.4774 -0.0795 17 1 11.1167 -0.8445 -0.7217 18 1 12.7241 0.5661 0.4214 19 1 10.3845 0.6335 1.0558 20 6 3.9451 2.7583 0.6350 21 6 4.5528 2.5581 2.0218 22 6 3.4290 2.3295 3.0368 23 6 2.4723 3.5229 3.0143 24 6 1.8383 3.6496 1.6279 25 6 2.9339 3.9018 0.5879 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 4.4938 1.2054 -1.9250 32 1 3.3040 2.5775 -1.9067 33 1 6.1284 1.1152 -0.2720 34 1 7.1159 2.4498 -2.0469 35 1 7.4875 3.6748 -0.8102 36 1 8.8592 2.0153 0.4205 37 1 8.4873 0.7907 -0.8165 38 1 12.9103 1.9019 -1.9638 39 1 5.2130 1.6911 2.0083 40 1 5.1212 3.4451 2.3017 41 1 3.8558 2.2246 4.0342 42 1 2.8839 1.4219 2.7775 43 1 3.0238 4.4342 3.2455 44 1 1.6900 3.3738 3.7585 45 1 1.1353 4.4825 1.6245 46 1 1.3108 2.7276 1.3837 47 1 3.4374 4.8426 0.8103 48 1 2.4886 3.9533 -0.4057 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000376836100.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:48 Heat of formation + Delta-G solvation = -53.069494 kcal Electronic energy + Delta-G solvation = -23435.348379 eV Core-core repulsion = 20296.638909 eV Total energy + Delta-G solvation = -3138.709470 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 2.68 seconds Orbital eigenvalues (eV) -40.85834 -37.14878 -36.31361 -34.16582 -32.38291 -31.09003 -30.72016 -29.24122 -28.28418 -24.54974 -23.66028 -22.96274 -22.68524 -22.13172 -20.42913 -20.08132 -18.23458 -17.00726 -16.65006 -15.94878 -15.60107 -14.77119 -14.63747 -14.44490 -14.05809 -13.94741 -13.73714 -13.34054 -13.17308 -13.03749 -12.72259 -12.50227 -12.39572 -12.18985 -12.05153 -11.91780 -11.63840 -11.38989 -11.26078 -11.05361 -10.98844 -10.79962 -10.59318 -10.23903 -10.19086 -10.01263 -9.86151 -9.77902 -9.56799 -9.23214 -9.16035 -8.53993 -7.90523 -6.04571 -4.02969 3.31403 3.39175 3.44766 3.62424 4.33249 4.45899 4.51402 4.68517 4.77069 4.90153 4.94565 4.98959 5.03846 5.18434 5.20679 5.25308 5.29999 5.37284 5.44378 5.47565 5.64668 5.66569 5.70404 5.74997 5.77903 5.83010 5.87138 5.90652 5.95544 6.08832 6.13922 6.16954 6.20073 6.27902 6.38952 6.41013 6.45460 6.62735 6.66331 6.76391 7.13382 7.25489 7.37075 7.61547 7.74248 7.89093 8.52991 8.99685 9.57772 11.08832 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.022312 B = 0.003791 C = 0.003638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.606294 B = 7383.262883 C = 7695.622977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.053 3.947 3 O -0.365 6.365 4 C 0.076 3.924 5 H 0.083 0.917 6 C -0.188 4.188 7 C 0.077 3.923 8 H 0.088 0.912 9 N -0.671 5.671 10 C 0.075 3.925 11 C -0.010 4.010 12 C -0.521 4.521 13 H 0.071 0.929 14 C 0.067 3.933 15 N -0.904 5.904 16 Si 0.881 3.119 17 H -0.279 1.279 18 H -0.288 1.288 19 H -0.263 1.263 20 C -0.061 4.061 21 C -0.090 4.090 22 C -0.118 4.118 23 C -0.117 4.117 24 C -0.118 4.118 25 C -0.083 4.083 26 H 0.061 0.939 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.045 0.955 30 H 0.044 0.956 31 H 0.066 0.934 32 H 0.088 0.912 33 H 0.334 0.666 34 H 0.022 0.978 35 H 0.065 0.935 36 H 0.025 0.975 37 H 0.008 0.992 38 H 0.263 0.737 39 H 0.073 0.927 40 H 0.064 0.936 41 H 0.054 0.946 42 H 0.055 0.945 43 H 0.056 0.944 44 H 0.052 0.948 45 H 0.050 0.950 46 H 0.082 0.918 47 H 0.058 0.942 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.961 -2.208 7.421 25.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.023 4.023 3 O -0.284 6.284 4 C 0.018 3.982 5 H 0.101 0.899 6 C -0.227 4.227 7 C -0.035 4.035 8 H 0.106 0.894 9 N -0.300 5.300 10 C -0.053 4.053 11 C -0.047 4.047 12 C -0.559 4.559 13 H 0.089 0.911 14 C -0.134 4.134 15 N -0.543 5.543 16 Si 0.709 3.291 17 H -0.204 1.204 18 H -0.214 1.214 19 H -0.188 1.188 20 C -0.062 4.062 21 C -0.128 4.128 22 C -0.156 4.156 23 C -0.154 4.154 24 C -0.156 4.156 25 C -0.121 4.121 26 H 0.080 0.920 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.084 0.916 32 H 0.107 0.893 33 H 0.152 0.848 34 H 0.041 0.959 35 H 0.084 0.916 36 H 0.044 0.956 37 H 0.026 0.974 38 H 0.073 0.927 39 H 0.091 0.909 40 H 0.083 0.917 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.075 0.925 44 H 0.070 0.930 45 H 0.069 0.931 46 H 0.101 0.899 47 H 0.077 0.923 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -23.710 -1.659 7.919 25.053 hybrid contribution 0.317 -1.408 -0.412 1.501 sum -23.393 -3.067 7.507 24.759 Atomic orbital electron populations 1.21732 0.94124 1.01933 1.02903 1.22456 0.95268 0.84839 0.99781 1.87952 1.20921 1.25143 1.94403 1.23747 0.80505 0.97783 0.96174 0.89901 1.24235 1.00103 1.00864 0.97519 1.22457 0.88671 0.98156 0.94170 0.89430 1.60461 1.03149 1.08333 1.58021 1.21987 0.90178 0.99899 0.93213 1.19547 0.92551 0.94927 0.97721 1.21070 0.92110 1.21624 1.21136 0.91120 1.25010 0.96027 0.96700 0.95701 1.69914 1.01035 1.43076 1.40276 0.86749 0.77451 0.82398 0.82545 1.20446 1.21429 1.18755 1.22004 0.94501 0.94273 0.95431 1.21260 0.96411 1.02845 0.92285 1.21552 0.97057 0.98072 0.98880 1.21492 0.98328 0.98514 0.97102 1.21597 0.97438 1.02340 0.94176 1.21099 0.95344 0.96335 0.99310 0.92007 0.91500 0.92002 0.93682 0.93748 0.91571 0.89313 0.84786 0.95947 0.91602 0.95637 0.97420 0.92731 0.90868 0.91699 0.92694 0.92585 0.92520 0.92963 0.93133 0.89918 0.92339 0.91955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 10.28 37.16 0.38 -0.75 16 2 C 0.05 0.49 6.51 37.16 0.24 0.73 16 3 O -0.37 -4.05 7.28 -35.23 -0.26 -4.31 16 4 C 0.08 0.88 3.20 -26.07 -0.08 0.79 16 5 H 0.08 0.96 7.72 -51.93 -0.40 0.56 16 6 C -0.19 -2.31 7.09 -25.85 -0.18 -2.49 16 7 C 0.08 1.06 3.70 -67.07 -0.25 0.81 16 8 H 0.09 1.26 7.85 -51.93 -0.41 0.85 16 9 N -0.67 -10.79 5.27 -106.04 -0.56 -11.35 16 10 C 0.08 1.49 5.49 -3.82 -0.02 1.47 16 11 C -0.01 -0.23 4.30 -27.88 -0.12 -0.35 16 12 C -0.52 -14.91 9.66 -34.44 -0.33 -15.24 16 13 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 14 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 15 N -0.90 -28.05 13.96 55.43 0.77 -27.28 16 16 Si 0.88 21.87 27.47 -169.99 -4.67 17.20 16 17 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 19 H -0.26 -6.31 6.54 56.52 0.37 -5.94 16 20 C -0.06 -0.73 0.74 -154.37 -0.11 -0.85 16 21 C -0.09 -1.13 4.67 -26.80 -0.13 -1.25 16 22 C -0.12 -1.28 5.85 -26.67 -0.16 -1.44 16 23 C -0.12 -1.19 5.86 -26.76 -0.16 -1.35 16 24 C -0.12 -1.23 5.77 -26.67 -0.15 -1.39 16 25 C -0.08 -0.94 4.69 -26.80 -0.13 -1.07 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.84 8.10 -51.93 -0.42 0.42 16 32 H 0.09 1.07 7.61 -51.93 -0.40 0.67 16 33 H 0.33 5.13 8.10 -39.29 -0.32 4.81 16 34 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.07 1.34 8.13 -51.93 -0.42 0.92 16 36 H 0.03 0.62 7.20 -51.93 -0.37 0.25 16 37 H 0.01 0.18 7.57 -51.93 -0.39 -0.22 16 38 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 39 H 0.07 0.99 7.40 -51.93 -0.38 0.60 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.61 7.97 -51.93 -0.41 0.20 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.08 0.92 5.79 -51.93 -0.30 0.62 16 47 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 48 H 0.06 0.71 7.31 -51.93 -0.38 0.33 16 LS Contribution 362.76 15.07 5.47 5.47 Total: -1.00 -29.71 362.76 -9.81 -39.51 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -9.27 Total: 1.26 kcal Atomic # 6 Polarization: -19.22 SS G_CDS: -1.29 Total: -20.51 kcal Atomic # 7 Polarization: -38.84 SS G_CDS: 0.22 Total: -38.62 kcal Atomic # 8 Polarization: -4.05 SS G_CDS: -0.26 Total: -4.31 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.67 Total: 17.20 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.71 -9.81 -39.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000376836100.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.556 kcal (2) G-P(sol) polarization free energy of solvation -29.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.68 seconds