Wall clock time and date at job start Tue Mar 31 2020 06:41:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42894 * 109.47111 * 2 1 4 4 C 1.42902 * 114.00386 * 179.97438 * 3 2 1 5 5 H 1.08994 * 112.85708 * 341.24679 * 4 3 2 6 6 C 1.53849 * 113.63108 * 112.60600 * 4 3 2 7 7 C 1.53849 * 87.14275 * 139.68219 * 6 4 3 8 8 H 1.09002 * 113.63315 * 89.36839 * 7 6 4 9 9 N 1.46903 * 113.71020 * 220.31598 * 7 6 4 10 10 C 1.46898 * 111.00075 * 254.00397 * 9 7 6 11 11 C 1.53000 * 109.46860 * 179.97438 * 10 9 7 12 12 C 1.50701 * 109.46746 * 180.02562 * 11 10 9 13 13 H 1.08001 * 120.00242 * 0.02562 * 12 11 10 14 14 C 1.37883 * 119.99786 * 180.02562 * 12 11 10 15 15 N 1.31518 * 119.99773 * 179.97438 * 14 12 11 16 16 Si 1.86798 * 119.99975 * 359.97438 * 14 12 11 17 17 H 1.48504 * 109.47085 * 90.00236 * 16 14 12 18 18 H 1.48503 * 109.46701 * 210.00328 * 16 14 12 19 19 H 1.48505 * 109.47170 * 330.00135 * 16 14 12 20 20 C 1.53384 * 113.63187 * 210.00121 * 4 3 2 21 21 C 1.52723 * 113.55529 * 334.83829 * 20 4 3 22 22 C 1.53143 * 109.23765 * 187.46501 * 21 20 4 23 23 C 1.52967 * 109.43802 * 302.18063 * 22 21 20 24 24 C 1.52979 * 109.70323 * 61.68374 * 23 22 21 25 25 C 1.52723 * 113.55822 * 105.67266 * 20 4 3 26 26 H 1.09003 * 109.46877 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47373 * 300.00278 * 1 2 3 28 28 H 1.09003 * 109.47051 * 60.00112 * 1 2 3 29 29 H 1.08998 * 109.47373 * 239.99722 * 2 1 3 30 30 H 1.08996 * 109.46697 * 119.99700 * 2 1 3 31 31 H 1.09001 * 113.60266 * 25.11531 * 6 4 3 32 32 H 1.09002 * 113.60522 * 254.24646 * 6 4 3 33 33 H 1.00899 * 110.99986 * 17.96127 * 9 7 6 34 34 H 1.08989 * 109.47356 * 300.00346 * 10 9 7 35 35 H 1.08999 * 109.46672 * 60.00636 * 10 9 7 36 36 H 1.08989 * 109.47614 * 300.00427 * 11 10 9 37 37 H 1.08999 * 109.46763 * 60.00931 * 11 10 9 38 38 H 0.97000 * 119.99456 * 179.97438 * 15 14 12 39 39 H 1.08995 * 109.51196 * 307.39356 * 21 20 4 40 40 H 1.08999 * 109.50766 * 67.54219 * 21 20 4 41 41 H 1.09000 * 109.47885 * 182.18707 * 22 21 20 42 42 H 1.09006 * 109.47624 * 62.16670 * 22 21 20 43 43 H 1.09002 * 109.43364 * 301.61555 * 23 22 21 44 44 H 1.09003 * 109.39637 * 181.73083 * 23 22 21 45 45 H 1.08997 * 109.48085 * 178.31880 * 24 23 22 46 46 H 1.09001 * 109.48320 * 58.29547 * 24 23 22 47 47 H 1.08998 * 109.51201 * 292.44616 * 25 20 4 48 48 H 1.09000 * 109.51143 * 52.54853 * 25 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4602 0.0006 5 1 3.9280 0.5456 0.3238 6 6 4.0034 2.0488 -1.3004 7 6 4.9862 2.8394 -0.4196 8 1 5.9144 2.3063 -0.2136 9 7 5.2089 4.2185 -0.8741 10 6 6.5300 4.3595 -1.5006 11 6 6.7246 5.8057 -1.9605 12 6 8.0797 5.9502 -2.6039 13 1 8.7363 5.0959 -2.6778 14 6 8.4812 7.1731 -3.0982 15 7 9.6641 7.2993 -3.6592 16 14 7.3453 8.6505 -2.9711 17 1 7.6003 9.3625 -1.6931 18 1 7.5998 9.5698 -4.1093 19 1 5.9328 8.1938 -3.0100 20 6 3.9474 2.7220 0.7032 21 6 2.9375 3.8675 0.7207 22 6 3.6122 5.1267 1.2726 23 6 4.1553 4.8407 2.6737 24 6 5.2080 3.7330 2.6026 25 6 4.5615 2.4489 2.0747 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.2980 2.6793 -1.8417 32 1 4.4870 1.3091 -1.9385 33 1 4.4772 4.5147 -1.5025 34 1 7.3042 4.1002 -0.7786 35 1 6.5973 3.6930 -2.3605 36 1 5.9504 6.0646 -2.6827 37 1 6.6572 6.4725 -1.1009 38 1 9.9464 8.1596 -4.0073 39 1 2.5853 4.0578 -0.2930 40 1 2.0933 3.5989 1.3558 41 1 2.8844 5.9365 1.3232 42 1 4.4332 5.4162 0.6167 43 1 3.3382 4.5233 3.3216 44 1 4.6082 5.7459 3.0781 45 1 5.6140 3.5528 3.5980 46 1 6.0116 4.0376 1.9320 47 1 3.7824 2.1236 2.7641 48 1 5.3181 1.6693 1.9861 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000376836102.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:53 Heat of formation + Delta-G solvation = -50.773627 kcal Electronic energy + Delta-G solvation = -23524.598289 eV Core-core repulsion = 20385.988375 eV Total energy + Delta-G solvation = -3138.609914 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.79124 -37.41188 -35.72553 -34.31099 -32.46727 -31.07285 -30.64551 -29.31649 -28.25816 -24.61796 -23.21903 -23.06923 -22.39266 -22.12394 -20.46902 -20.17941 -18.04538 -16.94823 -16.62341 -15.96801 -15.74575 -14.79020 -14.58132 -14.36053 -14.23576 -13.78436 -13.50560 -13.31252 -13.10229 -12.88180 -12.66914 -12.58166 -12.41234 -12.23200 -11.86769 -11.62870 -11.55537 -11.31499 -11.16456 -11.02204 -10.92556 -10.76502 -10.60306 -10.35318 -10.11164 -9.98563 -9.80856 -9.76721 -9.51230 -9.20852 -9.18904 -8.52094 -7.70811 -6.03101 -4.01245 3.34242 3.41135 3.45808 3.58261 4.47608 4.49574 4.52518 4.64972 4.72873 4.86852 4.99071 5.04016 5.13008 5.16171 5.22366 5.31739 5.34561 5.41602 5.49570 5.56341 5.63324 5.68411 5.75004 5.82245 5.83983 5.86745 5.87867 5.95704 6.09508 6.13646 6.16097 6.24906 6.31485 6.36852 6.49323 6.57487 6.58131 6.63683 6.79872 7.08037 7.17561 7.22858 7.41870 7.64676 7.77424 7.93606 8.54653 9.01264 9.59545 11.10309 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.020993 B = 0.004114 C = 0.003839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.482979 B = 6803.924135 C = 7291.540708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.368 6.368 4 C 0.069 3.931 5 H 0.082 0.918 6 C -0.184 4.184 7 C 0.081 3.919 8 H 0.094 0.906 9 N -0.669 5.669 10 C 0.072 3.928 11 C -0.010 4.010 12 C -0.520 4.520 13 H 0.070 0.930 14 C 0.066 3.934 15 N -0.905 5.905 16 Si 0.882 3.118 17 H -0.277 1.277 18 H -0.290 1.290 19 H -0.265 1.265 20 C -0.061 4.061 21 C -0.067 4.067 22 C -0.135 4.135 23 C -0.111 4.111 24 C -0.114 4.114 25 C -0.099 4.099 26 H 0.067 0.933 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.044 0.956 30 H 0.044 0.956 31 H 0.090 0.910 32 H 0.064 0.936 33 H 0.338 0.662 34 H 0.063 0.937 35 H 0.021 0.979 36 H 0.012 0.988 37 H 0.021 0.979 38 H 0.263 0.737 39 H 0.057 0.943 40 H 0.053 0.947 41 H 0.045 0.955 42 H 0.110 0.890 43 H 0.047 0.953 44 H 0.054 0.946 45 H 0.050 0.950 46 H 0.073 0.927 47 H 0.056 0.944 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.557 -13.475 10.806 23.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.287 6.287 4 C 0.010 3.990 5 H 0.100 0.900 6 C -0.224 4.224 7 C -0.030 4.030 8 H 0.112 0.888 9 N -0.298 5.298 10 C -0.056 4.056 11 C -0.047 4.047 12 C -0.559 4.559 13 H 0.088 0.912 14 C -0.135 4.135 15 N -0.544 5.544 16 Si 0.710 3.290 17 H -0.203 1.203 18 H -0.216 1.216 19 H -0.189 1.189 20 C -0.062 4.062 21 C -0.104 4.104 22 C -0.172 4.172 23 C -0.149 4.149 24 C -0.152 4.152 25 C -0.137 4.137 26 H 0.086 0.914 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.108 0.892 32 H 0.083 0.917 33 H 0.157 0.843 34 H 0.082 0.918 35 H 0.039 0.961 36 H 0.031 0.969 37 H 0.039 0.961 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.128 0.872 43 H 0.065 0.935 44 H 0.073 0.927 45 H 0.069 0.931 46 H 0.092 0.908 47 H 0.075 0.925 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -16.328 -12.951 11.322 23.717 hybrid contribution -0.434 -0.019 -0.883 0.984 sum -16.761 -12.969 10.439 23.625 Atomic orbital electron populations 1.21735 0.94035 1.01945 1.03076 1.22462 0.95417 0.84605 0.99659 1.87966 1.20723 1.25413 1.94562 1.23622 0.80772 0.97663 0.96908 0.90019 1.24235 0.99722 1.00987 0.97420 1.22747 0.96001 0.89551 0.94700 0.88758 1.60548 1.05457 1.19296 1.44520 1.21994 0.88427 0.99146 0.96004 1.19539 0.97204 0.91982 0.96010 1.21077 1.00036 0.96963 1.37793 0.91197 1.25015 0.94960 0.98849 0.94644 1.69921 1.19411 1.24953 1.40100 0.86736 0.81962 0.82651 0.77660 1.20258 1.21585 1.18945 1.22070 0.95637 0.94132 0.94392 1.20844 0.95732 0.93220 1.00620 1.21872 1.01891 0.96340 0.97100 1.21411 0.97853 0.98039 0.97563 1.21457 0.98754 0.94795 1.00147 1.21423 0.99030 0.97648 0.95552 0.91429 0.91935 0.91912 0.93720 0.93727 0.89156 0.91695 0.84304 0.91831 0.96054 0.96934 0.96114 0.92767 0.92412 0.92878 0.93627 0.87221 0.93463 0.92741 0.93105 0.90802 0.92538 0.92566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 10.28 37.16 0.38 -0.79 16 2 C 0.06 0.51 6.50 37.16 0.24 0.75 16 3 O -0.37 -4.35 9.49 -35.23 -0.33 -4.68 16 4 C 0.07 0.78 3.76 -26.09 -0.10 0.68 16 5 H 0.08 0.83 7.82 -51.93 -0.41 0.43 16 6 C -0.18 -2.25 7.19 -25.85 -0.19 -2.44 16 7 C 0.08 1.08 3.34 -67.05 -0.22 0.86 16 8 H 0.09 1.28 7.80 -51.93 -0.40 0.87 16 9 N -0.67 -10.47 3.39 -106.03 -0.36 -10.83 16 10 C 0.07 1.40 5.48 -3.83 -0.02 1.38 16 11 C -0.01 -0.23 4.30 -27.88 -0.12 -0.35 16 12 C -0.52 -14.81 9.66 -34.44 -0.33 -15.14 16 13 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 14 C 0.07 1.94 5.47 -17.82 -0.10 1.85 16 15 N -0.90 -28.06 13.96 55.43 0.77 -27.28 16 16 Si 0.88 21.95 27.47 -169.99 -4.67 17.28 16 17 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 19 H -0.26 -6.33 6.54 56.52 0.37 -5.96 16 20 C -0.06 -0.74 0.74 -154.38 -0.11 -0.85 16 21 C -0.07 -0.85 3.97 -26.80 -0.11 -0.96 16 22 C -0.13 -1.81 5.75 -26.67 -0.15 -1.96 16 23 C -0.11 -1.38 5.86 -26.76 -0.16 -1.54 16 24 C -0.11 -1.40 5.85 -26.66 -0.16 -1.56 16 25 C -0.10 -1.13 5.09 -26.80 -0.14 -1.27 16 26 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.09 1.16 7.30 -51.93 -0.38 0.79 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.34 5.24 7.81 -39.29 -0.31 4.93 16 34 H 0.06 1.26 8.13 -51.94 -0.42 0.84 16 35 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.01 0.29 7.20 -51.94 -0.37 -0.08 16 37 H 0.02 0.49 7.57 -51.93 -0.39 0.10 16 38 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 39 H 0.06 0.78 6.97 -51.93 -0.36 0.41 16 40 H 0.05 0.69 8.08 -51.93 -0.42 0.27 16 41 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.11 1.70 5.62 -51.93 -0.29 1.41 16 43 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 45 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.07 1.05 7.97 -51.93 -0.41 0.64 16 47 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 48 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 LS Contribution 362.67 15.07 5.47 5.47 Total: -1.00 -29.76 362.67 -9.66 -39.42 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -9.25 Total: 1.98 kcal Atomic # 6 Polarization: -20.06 SS G_CDS: -1.28 Total: -21.34 kcal Atomic # 7 Polarization: -38.53 SS G_CDS: 0.41 Total: -38.12 kcal Atomic # 8 Polarization: -4.35 SS G_CDS: -0.33 Total: -4.68 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.67 Total: 17.28 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.76 -9.66 -39.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000376836102.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.357 kcal (2) G-P(sol) polarization free energy of solvation -29.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds