Wall clock time and date at job start Tue Mar 31 2020 05:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47020 * 2 1 4 4 C 1.52997 * 109.47122 * 119.99693 * 2 1 3 5 5 N 1.46500 * 109.47425 * 182.45749 * 4 2 1 6 6 C 1.46507 * 119.99814 * 302.83513 * 5 4 2 7 7 C 1.50703 * 109.47079 * 274.94751 * 6 5 4 8 8 H 1.07995 * 119.99716 * 355.02986 * 7 6 5 9 9 C 1.37879 * 119.99737 * 175.02544 * 7 6 5 10 10 N 1.31512 * 119.99780 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 119.99673 * 179.72348 * 9 7 6 12 12 H 1.48498 * 109.47357 * 270.28019 * 11 9 7 13 13 H 1.48502 * 109.47357 * 30.28037 * 11 9 7 14 14 H 1.48495 * 109.46928 * 150.27825 * 11 9 7 15 15 C 1.34770 * 120.00085 * 122.83374 * 5 4 2 16 16 O 1.21281 * 119.99886 * 185.98036 * 15 5 4 17 17 C 1.50702 * 120.00193 * 5.98348 * 15 5 4 18 18 H 1.08998 * 109.47218 * 53.98132 * 17 15 5 19 19 C 1.53008 * 109.46911 * 293.98490 * 17 15 5 20 20 C 1.52997 * 109.46932 * 179.97438 * 19 17 15 21 21 C 1.52999 * 109.47012 * 60.00348 * 20 19 17 22 22 C 1.53001 * 109.47225 * 299.99573 * 21 20 19 23 23 H 1.09003 * 109.47146 * 300.00612 * 22 21 20 24 24 C 1.52996 * 109.47574 * 179.97438 * 22 21 20 25 25 C 1.52999 * 109.47275 * 173.98690 * 17 15 5 26 26 H 1.08996 * 109.47614 * 299.99864 * 1 2 3 27 27 H 1.09001 * 109.46974 * 60.00192 * 1 2 3 28 28 H 1.09000 * 109.47049 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47614 * 240.00136 * 2 1 3 30 30 H 1.09001 * 109.47092 * 179.81057 * 3 2 1 31 31 H 1.09001 * 109.47264 * 299.81612 * 3 2 1 32 32 H 1.09006 * 109.47427 * 59.81818 * 3 2 1 33 33 H 1.09008 * 109.46681 * 62.46020 * 4 2 1 34 34 H 1.08998 * 109.47183 * 302.46044 * 4 2 1 35 35 H 1.08999 * 109.46755 * 154.94514 * 6 5 4 36 36 H 1.08996 * 109.47061 * 34.94882 * 6 5 4 37 37 H 0.96995 * 120.00265 * 359.71546 * 10 9 7 38 38 H 1.08998 * 109.46887 * 299.99845 * 19 17 15 39 39 H 1.08998 * 109.46773 * 59.99758 * 19 17 15 40 40 H 1.08998 * 109.47460 * 299.99803 * 20 19 17 41 41 H 1.09000 * 109.46906 * 179.97438 * 20 19 17 42 42 H 1.09000 * 109.47436 * 179.97438 * 21 20 19 43 43 H 1.08998 * 109.47453 * 59.99451 * 21 20 19 44 44 H 1.09003 * 109.47420 * 300.00489 * 24 22 21 45 45 H 1.09006 * 109.46568 * 60.00124 * 24 22 21 46 46 H 1.08993 * 109.47395 * 179.97438 * 24 22 21 47 47 H 1.09000 * 109.46713 * 299.99553 * 25 17 15 48 48 H 1.08996 * 109.46957 * 59.99752 * 25 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5038 -0.6701 1.2793 6 6 4.2786 -1.2070 0.1578 7 6 4.4716 -2.6899 0.3448 8 1 4.1289 -3.1691 1.2499 9 6 5.0856 -3.4347 -0.6398 10 7 5.5033 -2.8509 -1.7418 11 14 5.3318 -5.2714 -0.4047 12 1 6.6390 -5.5150 0.2565 13 1 4.2396 -5.8127 0.4434 14 1 5.3125 -5.9466 -1.7271 15 6 4.1376 -0.1293 2.3386 16 8 5.3420 0.0120 2.3173 17 6 3.3499 0.2998 3.5496 18 1 2.7441 -0.5345 3.9033 19 6 2.4377 1.4701 3.1762 20 6 1.6375 1.9052 4.4055 21 6 2.5998 2.3416 5.5121 22 6 3.5119 1.1714 5.8855 23 1 2.9062 0.3369 6.2388 24 6 4.4746 1.6078 6.9916 25 6 4.3125 0.7363 4.6558 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 3.1300 1.4425 0.0034 31 1 1.6793 1.9554 -0.8916 32 1 1.6740 1.9573 0.8884 33 1 1.7130 -1.7608 1.2275 34 1 1.6411 -0.2334 2.1387 35 1 5.2510 -0.7159 0.1199 36 1 3.7431 -1.0249 -0.7739 37 1 5.3757 -1.8972 -1.8637 38 1 3.0434 2.3043 2.8225 39 1 1.7520 1.1591 2.3881 40 1 1.0317 1.0708 4.7588 41 1 0.9880 2.7393 4.1396 42 1 2.0297 2.6521 6.3877 43 1 3.2055 3.1760 5.1587 44 1 5.0803 2.4421 6.6379 45 1 3.9048 1.9182 7.8675 46 1 5.1241 0.7740 7.2579 47 1 4.9623 -0.0975 4.9218 48 1 4.9182 1.5705 4.3020 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383263247.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:45 Heat of formation + Delta-G solvation = -72.040462 kcal Electronic energy + Delta-G solvation = -24086.565998 eV Core-core repulsion = 20947.033885 eV Total energy + Delta-G solvation = -3139.532113 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.14460 -37.77707 -36.47785 -33.75518 -32.86820 -32.18317 -30.84787 -27.30616 -27.06385 -26.23359 -25.61838 -23.66263 -22.16352 -21.68211 -19.91817 -19.69443 -18.51163 -16.76776 -16.42825 -15.60614 -15.20099 -14.90117 -14.52235 -14.24157 -13.96029 -13.74830 -13.64972 -13.42456 -13.10594 -12.62243 -12.46449 -12.32867 -12.09618 -12.02379 -11.79758 -11.64446 -11.52879 -11.15729 -11.05076 -10.99539 -10.90279 -10.82168 -10.73413 -10.55561 -10.47172 -10.44877 -10.15605 -10.11864 -9.71530 -9.07622 -8.78458 -8.36029 -7.53304 -6.36636 -4.08263 3.40028 3.44822 3.47321 3.62216 3.89592 4.54178 4.66132 4.69224 4.73339 5.03598 5.10901 5.12654 5.19143 5.22000 5.34670 5.38523 5.41278 5.46757 5.52866 5.61325 5.63151 5.67920 5.74709 5.79364 5.82546 5.86708 5.93895 5.96501 5.99682 6.05639 6.14016 6.19516 6.21132 6.24104 6.30501 6.33885 6.45083 6.54096 6.56263 6.63206 6.93929 7.21213 7.46881 8.08138 8.37511 8.46942 8.80369 9.07811 9.61478 11.00478 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.016046 B = 0.005581 C = 0.004548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.616811 B = 5016.035066 C = 6155.289460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.114 4.114 3 C -0.149 4.149 4 C 0.103 3.897 5 N -0.588 5.588 6 C 0.233 3.767 7 C -0.606 4.606 8 H 0.050 0.950 9 C 0.019 3.981 10 N -0.911 5.911 11 Si 1.073 2.927 12 H -0.287 1.287 13 H -0.290 1.290 14 H -0.284 1.284 15 C 0.511 3.489 16 O -0.548 6.548 17 C -0.106 4.106 18 H 0.087 0.913 19 C -0.131 4.131 20 C -0.117 4.117 21 C -0.114 4.114 22 C -0.093 4.093 23 H 0.068 0.932 24 C -0.146 4.146 25 C -0.091 4.091 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.080 0.920 30 H 0.058 0.942 31 H 0.049 0.951 32 H 0.055 0.945 33 H 0.065 0.935 34 H 0.086 0.914 35 H 0.033 0.967 36 H 0.024 0.976 37 H 0.268 0.732 38 H 0.066 0.934 39 H 0.089 0.911 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.058 0.942 43 H 0.061 0.939 44 H 0.054 0.946 45 H 0.051 0.949 46 H 0.055 0.945 47 H 0.066 0.934 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.561 9.997 11.853 19.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.134 4.134 3 C -0.206 4.206 4 C -0.021 4.021 5 N -0.319 5.319 6 C 0.113 3.887 7 C -0.644 4.644 8 H 0.068 0.932 9 C -0.185 4.185 10 N -0.547 5.547 11 Si 0.901 3.099 12 H -0.214 1.214 13 H -0.216 1.216 14 H -0.209 1.209 15 C 0.298 3.702 16 O -0.427 6.427 17 C -0.128 4.128 18 H 0.105 0.895 19 C -0.168 4.168 20 C -0.154 4.154 21 C -0.152 4.152 22 C -0.111 4.111 23 H 0.086 0.914 24 C -0.203 4.203 25 C -0.129 4.129 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.099 0.901 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.104 0.896 35 H 0.051 0.949 36 H 0.042 0.958 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.107 0.893 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.073 0.927 45 H 0.070 0.930 46 H 0.074 0.926 47 H 0.085 0.915 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.298 8.698 11.091 17.456 hybrid contribution -0.652 1.197 0.664 1.516 sum -10.950 9.894 11.755 18.867 Atomic orbital electron populations 1.21757 0.95065 1.01744 1.01376 1.21445 0.95237 0.96684 0.99990 1.21949 1.01927 0.95745 1.01004 1.21834 0.81442 1.00688 0.98101 1.47921 1.05821 1.57896 1.20242 1.19315 0.91375 0.94430 0.83541 1.22283 1.43077 0.93097 1.05988 0.93161 1.25782 0.93409 1.06568 0.92705 1.70765 1.44145 1.13160 1.26605 0.83486 0.76344 0.74318 0.75720 1.21405 1.21579 1.20941 1.20360 0.88005 0.77814 0.84043 1.90637 1.14827 1.55815 1.81381 1.21317 0.97670 0.98959 0.94811 0.89462 1.22129 0.98481 0.97636 0.98514 1.21533 0.97654 1.00864 0.95391 1.21608 0.97497 0.97983 0.98074 1.21170 0.96612 0.97923 0.95400 0.91369 1.21807 0.99214 1.01422 0.97870 1.21373 0.96774 1.01882 0.92893 0.92973 0.92718 0.92531 0.90149 0.92263 0.93221 0.92581 0.91688 0.89622 0.94889 0.95835 0.92205 0.91541 0.89278 0.91928 0.91932 0.92294 0.92004 0.92707 0.92993 0.92637 0.91486 0.91283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.19 37.16 0.34 -1.30 16 2 C -0.11 -1.72 2.66 -90.62 -0.24 -1.96 16 3 C -0.15 -2.12 8.54 37.16 0.32 -1.80 16 4 C 0.10 1.71 4.79 -4.04 -0.02 1.70 16 5 N -0.59 -12.49 1.75 -175.05 -0.31 -12.80 16 6 C 0.23 6.10 4.48 -5.19 -0.02 6.08 16 7 C -0.61 -17.45 9.38 -34.44 -0.32 -17.77 16 8 H 0.05 1.47 7.81 -52.49 -0.41 1.06 16 9 C 0.02 0.57 5.46 -17.82 -0.10 0.47 16 10 N -0.91 -27.91 13.65 55.43 0.76 -27.15 16 11 Si 1.07 25.84 29.90 -169.99 -5.08 20.76 16 12 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 13 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 14 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 15 C 0.51 10.74 7.02 -10.99 -0.08 10.66 16 16 O -0.55 -13.96 15.47 5.56 0.09 -13.87 16 17 C -0.11 -1.63 1.70 -91.77 -0.16 -1.78 16 18 H 0.09 1.27 7.81 -51.93 -0.41 0.86 16 19 C -0.13 -1.62 3.96 -26.73 -0.11 -1.73 16 20 C -0.12 -1.15 5.92 -26.73 -0.16 -1.30 16 21 C -0.11 -1.12 5.20 -26.73 -0.14 -1.26 16 22 C -0.09 -1.02 2.72 -90.60 -0.25 -1.27 16 23 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 24 C -0.15 -1.45 9.19 37.16 0.34 -1.11 16 25 C -0.09 -1.33 3.80 -26.71 -0.10 -1.43 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.08 1.43 6.74 -51.93 -0.35 1.08 16 30 H 0.06 1.01 7.50 -51.93 -0.39 0.62 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.69 5.65 -51.93 -0.29 0.40 16 33 H 0.06 1.15 8.14 -51.92 -0.42 0.73 16 34 H 0.09 1.18 3.77 -51.93 -0.20 0.98 16 35 H 0.03 0.98 7.21 -51.93 -0.37 0.60 16 36 H 0.02 0.62 6.04 -51.93 -0.31 0.31 16 37 H 0.27 8.17 7.19 -40.82 -0.29 7.88 16 38 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.09 1.08 2.67 -51.93 -0.14 0.94 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 45 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 48 H 0.07 1.09 8.03 -51.93 -0.42 0.67 16 LS Contribution 358.65 15.07 5.40 5.40 Total: -1.00 -32.75 358.65 -8.55 -41.30 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -8.72 Total: 0.16 kcal Atomic # 6 Polarization: -13.12 SS G_CDS: -0.69 Total: -13.80 kcal Atomic # 7 Polarization: -40.40 SS G_CDS: 0.45 Total: -39.95 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: 0.09 Total: -13.87 kcal Atomic # 14 Polarization: 25.84 SS G_CDS: -5.08 Total: 20.76 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.75 -8.55 -41.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383263247.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.739 kcal (2) G-P(sol) polarization free energy of solvation -32.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds