Wall clock time and date at job start Tue Mar 31 2020 06:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.47178 * 2 1 4 4 C 1.50702 * 109.46893 * 239.99963 * 2 1 3 5 5 O 1.21280 * 120.00495 * 323.49754 * 4 2 1 6 6 N 1.34772 * 120.00057 * 143.49817 * 4 2 1 7 7 C 1.46930 * 120.63039 * 5.15349 * 6 4 2 8 8 C 1.53631 * 108.54366 * 126.36996 * 7 6 4 9 9 C 1.53034 * 109.24068 * 54.85670 * 8 7 6 10 10 C 1.52998 * 109.45184 * 178.49756 * 9 8 7 11 11 C 1.50697 * 109.47048 * 295.06790 * 10 9 8 12 12 H 1.08004 * 120.00375 * 359.97438 * 11 10 9 13 13 C 1.37878 * 119.99939 * 180.02562 * 11 10 9 14 14 N 1.31517 * 120.00141 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 119.99816 * 179.97438 * 13 11 10 16 16 H 1.48494 * 109.47142 * 359.97438 * 15 13 11 17 17 H 1.48506 * 109.47041 * 119.99811 * 15 13 11 18 18 H 1.48495 * 109.46876 * 239.99497 * 15 13 11 19 19 C 1.53039 * 109.54122 * 298.51373 * 9 8 7 20 20 C 1.46925 * 120.63349 * 185.43608 * 6 4 2 21 21 C 1.52998 * 109.47317 * 120.00404 * 2 1 3 22 22 C 1.53000 * 109.47400 * 59.99763 * 21 2 1 23 23 C 1.53002 * 109.46796 * 299.99775 * 21 2 1 24 24 C 1.53002 * 109.47317 * 179.97438 * 21 2 1 25 25 H 1.09001 * 109.47210 * 182.90616 * 1 2 3 26 26 H 1.09004 * 109.46785 * 302.90121 * 1 2 3 27 27 H 1.08999 * 109.47338 * 62.90378 * 1 2 3 28 28 H 1.08999 * 109.59038 * 246.20381 * 7 6 4 29 29 H 1.09002 * 109.58407 * 6.63223 * 7 6 4 30 30 H 1.09004 * 109.63054 * 294.87140 * 8 7 6 31 31 H 1.09000 * 109.43034 * 174.73020 * 8 7 6 32 32 H 1.08999 * 109.45915 * 58.53112 * 9 8 7 33 33 H 1.09004 * 109.47101 * 55.06066 * 10 9 8 34 34 H 1.08998 * 109.47738 * 175.06385 * 10 9 8 35 35 H 0.96998 * 119.99377 * 180.02562 * 14 13 11 36 36 H 1.09002 * 109.49542 * 301.41462 * 19 9 8 37 37 H 1.09000 * 109.52864 * 181.33269 * 19 9 8 38 38 H 1.08999 * 109.58719 * 353.37065 * 20 6 4 39 39 H 1.09005 * 109.59006 * 113.65367 * 20 6 4 40 40 H 1.09005 * 109.46845 * 300.00273 * 22 21 2 41 41 H 1.08997 * 109.47128 * 60.00119 * 22 21 2 42 42 H 1.09001 * 109.47482 * 180.02562 * 22 21 2 43 43 H 1.09008 * 109.46814 * 180.02562 * 23 21 2 44 44 H 1.08997 * 109.47252 * 299.99549 * 23 21 2 45 45 H 1.08998 * 109.47557 * 59.99995 * 23 21 2 46 46 H 1.08997 * 109.46925 * 299.99705 * 24 21 2 47 47 H 1.08993 * 109.47178 * 59.99596 * 24 21 2 48 48 H 1.09001 * 109.46776 * 179.97438 * 24 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 1.4385 -1.6781 -1.6570 6 7 3.1415 -0.2705 -1.8570 7 6 3.9350 0.8288 -1.2907 8 6 5.3943 0.3649 -1.1672 9 6 5.8846 -0.1259 -2.5313 10 6 7.3494 -0.5542 -2.4223 11 6 8.2010 0.6462 -2.0989 12 1 7.7434 1.6177 -1.9831 13 6 9.5646 0.5046 -1.9518 14 7 10.1220 -0.6782 -2.0933 15 14 10.6204 1.9929 -1.5517 16 1 9.7582 3.1972 -1.4455 17 1 11.3213 1.7700 -0.2616 18 1 11.6209 2.1943 -2.6303 19 6 5.0370 -1.3180 -2.9814 20 6 3.5768 -0.8769 -3.1226 21 6 2.0401 -0.7213 1.2492 22 6 1.5301 -2.1638 1.2492 23 6 1.5301 -0.0001 2.4984 24 6 3.5701 -0.7219 1.2488 25 1 -0.3634 -1.0263 0.0521 26 1 -0.3633 0.5582 0.8629 27 1 -0.3634 0.4681 -0.9148 28 1 3.8789 1.6964 -1.9482 29 1 3.5481 1.0888 -0.3054 30 1 5.4603 -0.4473 -0.4432 31 1 6.0132 1.1989 -0.8366 32 1 5.7951 0.6792 -3.2605 33 1 7.4529 -1.2968 -1.6310 34 1 7.6735 -0.9851 -3.3696 35 1 11.0812 -0.7777 -1.9894 36 1 5.1065 -2.1142 -2.2402 37 1 5.4015 -1.6822 -3.9419 38 1 2.9535 -1.7427 -3.3463 39 1 3.4897 -0.1463 -3.9269 40 1 0.4400 -2.1638 1.2492 41 1 1.8934 -2.6776 0.3592 42 1 1.8931 -2.6776 2.1393 43 1 1.8939 -0.5137 3.3884 44 1 1.8935 1.0275 2.4985 45 1 0.4401 0.0000 2.4985 46 1 3.9330 -1.2359 0.3589 47 1 3.9338 0.3056 1.2486 48 1 3.9334 -1.2354 2.1390 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399173347.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:46 Heat of formation + Delta-G solvation = -68.804977 kcal Electronic energy + Delta-G solvation = -24056.351132 eV Core-core repulsion = 20916.959320 eV Total energy + Delta-G solvation = -3139.391812 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.69142 -37.84134 -36.79844 -33.98157 -32.16892 -31.13461 -30.78871 -28.07083 -27.43266 -27.26038 -25.10802 -23.85226 -22.76845 -21.76619 -20.21889 -19.01167 -17.91913 -17.16646 -16.30125 -15.80697 -15.51527 -14.66510 -14.52746 -14.10967 -14.01203 -13.76959 -13.68885 -13.35138 -12.84666 -12.76415 -12.68222 -12.30465 -12.15543 -12.02636 -11.84830 -11.78159 -11.70371 -11.35901 -11.20225 -11.01120 -10.93934 -10.76609 -10.70743 -10.57547 -10.52066 -10.34252 -10.04611 -9.70068 -9.36990 -9.22060 -8.96037 -8.37263 -8.27839 -6.01381 -4.03360 2.79403 3.21936 3.28557 3.36736 3.39275 4.43730 4.48994 4.59884 4.67006 4.94363 5.11692 5.20429 5.29757 5.33689 5.34300 5.40449 5.50866 5.53538 5.56715 5.66612 5.67107 5.69703 5.76525 5.77182 5.83701 5.89901 5.92145 6.00455 6.05157 6.07099 6.10543 6.24194 6.32264 6.40345 6.42039 6.43838 6.54030 6.72759 6.97534 7.00670 7.10911 7.64571 7.66392 7.80646 7.98560 8.38113 8.40889 9.03425 9.60606 11.09900 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.023317 B = 0.004388 C = 0.004046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.550170 B = 6378.799808 C = 6917.962561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.104 4.104 3 H 0.089 0.911 4 C 0.522 3.478 5 O -0.549 6.549 6 N -0.605 5.605 7 C 0.095 3.905 8 C -0.121 4.121 9 C -0.080 4.080 10 C 0.028 3.972 11 C -0.515 4.515 12 H 0.056 0.944 13 C 0.057 3.943 14 N -0.895 5.895 15 Si 0.888 3.112 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.285 1.285 19 C -0.128 4.128 20 C 0.111 3.889 21 C -0.055 4.055 22 C -0.146 4.146 23 C -0.141 4.141 24 C -0.157 4.157 25 H 0.070 0.930 26 H 0.063 0.937 27 H 0.053 0.947 28 H 0.063 0.937 29 H 0.084 0.916 30 H 0.064 0.936 31 H 0.083 0.917 32 H 0.057 0.943 33 H 0.015 0.985 34 H 0.015 0.985 35 H 0.259 0.741 36 H 0.060 0.940 37 H 0.068 0.932 38 H 0.084 0.916 39 H 0.061 0.939 40 H 0.058 0.942 41 H 0.065 0.935 42 H 0.052 0.948 43 H 0.057 0.943 44 H 0.056 0.944 45 H 0.058 0.942 46 H 0.067 0.933 47 H 0.063 0.937 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.392 2.375 6.157 18.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.126 4.126 3 H 0.107 0.893 4 C 0.311 3.689 5 O -0.428 6.428 6 N -0.337 5.337 7 C -0.027 4.027 8 C -0.159 4.159 9 C -0.099 4.099 10 C -0.009 4.009 11 C -0.553 4.553 12 H 0.074 0.926 13 C -0.144 4.144 14 N -0.534 5.534 15 Si 0.716 3.284 16 H -0.198 1.198 17 H -0.211 1.211 18 H -0.211 1.211 19 C -0.166 4.166 20 C -0.011 4.011 21 C -0.056 4.056 22 C -0.203 4.203 23 C -0.198 4.198 24 C -0.214 4.214 25 H 0.089 0.911 26 H 0.082 0.918 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.102 0.898 30 H 0.083 0.917 31 H 0.101 0.899 32 H 0.075 0.925 33 H 0.033 0.967 34 H 0.033 0.967 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.102 0.898 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.084 0.916 42 H 0.071 0.929 43 H 0.076 0.924 44 H 0.075 0.925 45 H 0.077 0.923 46 H 0.085 0.915 47 H 0.082 0.918 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -17.532 1.777 5.924 18.591 hybrid contribution 0.949 0.875 0.154 1.300 sum -16.584 2.651 6.078 17.860 Atomic orbital electron populations 1.21763 0.92929 1.03207 1.01608 1.21441 0.97724 1.00231 0.93155 0.89262 1.20521 0.79840 0.84016 0.84548 1.90631 1.57964 1.27151 1.67032 1.48201 1.25433 1.36089 1.24023 1.22231 0.92980 0.88769 0.98739 1.22065 0.92546 1.02232 0.99021 1.21181 0.97731 0.95712 0.95261 1.19123 0.88151 0.96567 0.97101 1.21268 0.91902 0.94632 1.47528 0.92574 1.25020 0.98217 0.95589 0.95615 1.69977 1.10919 1.22265 1.50283 0.86606 0.80602 0.83247 0.77952 1.19765 1.21099 1.21107 1.22008 0.93349 0.99448 1.01828 1.21645 0.96450 0.98347 0.84671 1.20434 0.96012 0.95922 0.93216 1.21981 1.01155 0.94938 1.02210 1.21919 1.01085 1.00145 0.96649 1.22286 0.93779 1.02440 1.02886 0.91132 0.91814 0.92782 0.91834 0.89753 0.91722 0.89874 0.92461 0.96664 0.96655 0.93114 0.92167 0.91294 0.89804 0.92028 0.92350 0.91628 0.92942 0.92363 0.92533 0.92303 0.91458 0.91846 0.92325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 8.11 37.16 0.30 -1.10 16 2 C -0.10 -1.18 1.68 -91.77 -0.15 -1.34 16 3 H 0.09 0.91 6.08 -51.93 -0.32 0.59 16 4 C 0.52 7.62 5.07 -10.99 -0.06 7.56 16 5 O -0.55 -9.60 14.32 5.56 0.08 -9.52 16 6 N -0.60 -8.77 2.62 -172.49 -0.45 -9.22 16 7 C 0.10 1.28 5.09 -3.48 -0.02 1.26 16 8 C -0.12 -2.02 4.82 -26.39 -0.13 -2.15 16 9 C -0.08 -1.53 2.10 -90.58 -0.19 -1.72 16 10 C 0.03 0.68 4.45 -27.89 -0.12 0.55 16 11 C -0.51 -13.80 8.39 -34.44 -0.29 -14.08 16 12 H 0.06 1.45 7.06 -52.48 -0.37 1.08 16 13 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 14 N -0.89 -26.43 13.29 55.43 0.74 -25.69 16 15 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 16 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 C -0.13 -2.17 5.36 -26.61 -0.14 -2.31 16 20 C 0.11 1.68 6.44 -3.71 -0.02 1.65 16 21 C -0.06 -0.59 0.57 -154.51 -0.09 -0.68 16 22 C -0.15 -1.69 7.70 37.16 0.29 -1.41 16 23 C -0.14 -1.21 8.12 37.16 0.30 -0.91 16 24 C -0.16 -1.86 6.29 37.16 0.23 -1.63 16 25 H 0.07 0.79 6.09 -51.93 -0.32 0.47 16 26 H 0.06 0.52 6.59 -51.93 -0.34 0.17 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.08 0.96 3.42 -51.93 -0.18 0.79 16 30 H 0.06 1.12 6.04 -51.93 -0.31 0.81 16 31 H 0.08 1.49 6.91 -51.93 -0.36 1.13 16 32 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 36 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 37 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.08 1.31 7.00 -51.93 -0.36 0.95 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.06 0.63 6.37 -51.93 -0.33 0.30 16 41 H 0.06 0.94 6.40 -51.93 -0.33 0.60 16 42 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 44 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.06 0.46 6.50 -51.93 -0.34 0.12 16 46 H 0.07 0.95 5.08 -51.93 -0.26 0.69 16 47 H 0.06 0.71 6.33 -51.93 -0.33 0.38 16 48 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 346.60 15.07 5.22 5.22 Total: -1.00 -30.14 346.60 -7.98 -38.12 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -8.36 Total: -0.16 kcal Atomic # 6 Polarization: -14.63 SS G_CDS: -0.19 Total: -14.82 kcal Atomic # 7 Polarization: -35.19 SS G_CDS: 0.28 Total: -34.91 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.08 Total: -9.52 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.14 -7.98 -38.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399173347.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.682 kcal (2) G-P(sol) polarization free energy of solvation -30.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds