Wall clock time and date at job start Tue Mar 31 2020 06:15:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.46702 * 2 1 4 4 C 1.50696 * 109.47646 * 119.99698 * 2 1 3 5 5 O 1.21290 * 119.99662 * 36.36935 * 4 2 1 6 6 N 1.34776 * 120.00512 * 216.36666 * 4 2 1 7 7 C 1.46927 * 120.62827 * 4.32395 * 6 4 2 8 8 C 1.52762 * 109.00727 * 233.58106 * 7 6 4 9 9 C 1.53041 * 109.37935 * 305.58937 * 8 7 6 10 10 C 1.53005 * 109.44675 * 181.25317 * 9 8 7 11 11 C 1.50707 * 109.47080 * 64.93619 * 10 9 8 12 12 H 1.08002 * 119.99572 * 359.97438 * 11 10 9 13 13 C 1.37877 * 120.00033 * 179.97438 * 11 10 9 14 14 N 1.31508 * 119.99739 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 119.99978 * 0.02562 * 13 11 10 16 16 H 1.48502 * 109.47250 * 89.99663 * 15 13 11 17 17 H 1.48501 * 109.46837 * 209.99937 * 15 13 11 18 18 H 1.48503 * 109.46792 * 329.99734 * 15 13 11 19 19 C 1.53034 * 109.53978 * 61.23961 * 9 8 7 20 20 C 1.46927 * 120.63038 * 184.59671 * 6 4 2 21 21 C 1.53000 * 109.47347 * 240.00132 * 2 1 3 22 22 C 1.53007 * 109.46856 * 59.99742 * 21 2 1 23 23 C 1.52992 * 109.46930 * 299.99832 * 21 2 1 24 24 C 1.52998 * 109.47366 * 179.97438 * 21 2 1 25 25 H 1.09001 * 109.46773 * 175.18473 * 1 2 3 26 26 H 1.08999 * 109.47225 * 295.17973 * 1 2 3 27 27 H 1.08997 * 109.47529 * 55.18329 * 1 2 3 28 28 H 1.08997 * 109.58566 * 353.41368 * 7 6 4 29 29 H 1.09000 * 109.58891 * 113.84154 * 7 6 4 30 30 H 1.09000 * 109.56258 * 185.55350 * 8 7 6 31 31 H 1.08997 * 109.36059 * 65.49494 * 8 7 6 32 32 H 1.08997 * 109.45778 * 301.21540 * 9 8 7 33 33 H 1.08997 * 109.47282 * 184.93679 * 10 9 8 34 34 H 1.08998 * 109.47106 * 304.94234 * 10 9 8 35 35 H 0.97005 * 119.99688 * 180.02562 * 14 13 11 36 36 H 1.09010 * 109.49768 * 178.68018 * 19 9 8 37 37 H 1.08998 * 109.49678 * 58.58855 * 19 9 8 38 38 H 1.09002 * 109.58849 * 246.15730 * 20 6 4 39 39 H 1.09003 * 109.58763 * 6.44218 * 20 6 4 40 40 H 1.09000 * 109.47105 * 299.99707 * 22 21 2 41 41 H 1.09004 * 109.47007 * 180.02562 * 22 21 2 42 42 H 1.08999 * 109.47343 * 60.00292 * 22 21 2 43 43 H 1.09004 * 109.47208 * 179.97438 * 23 21 2 44 44 H 1.08996 * 109.47603 * 299.99624 * 23 21 2 45 45 H 1.09000 * 109.47540 * 59.99982 * 23 21 2 46 46 H 1.08999 * 109.47374 * 300.00039 * 24 21 2 47 47 H 1.09006 * 109.46926 * 59.99856 * 24 21 2 48 48 H 1.08999 * 109.47521 * 180.02562 * 24 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7103 1.2304 5 8 1.4372 -1.6766 1.6584 6 7 3.1432 -0.2720 1.8553 7 6 3.8214 0.9515 1.4060 8 6 5.2938 0.6376 1.1470 9 6 5.9054 0.0027 2.3980 10 6 7.3880 -0.2837 2.1510 11 6 8.1258 1.0165 1.9605 12 1 7.5907 1.9533 2.0102 13 6 9.4839 1.0100 1.7228 14 7 10.1278 2.1446 1.5571 15 14 10.4093 -0.6104 1.6363 16 1 10.4130 -1.1041 0.2357 17 1 11.8075 -0.4069 2.0932 18 1 9.7428 -1.6083 2.5111 19 6 5.1791 -1.3066 2.7147 20 6 3.7022 -1.0117 2.9951 21 6 2.0400 -0.7212 -1.2492 22 6 1.5299 0.0001 -2.4985 23 6 1.5301 -2.1636 -1.2492 24 6 3.5700 -0.7207 -1.2496 25 1 -0.3633 -1.0241 -0.0863 26 1 -0.3633 0.4372 0.9300 27 1 -0.3634 0.5867 -0.8436 28 1 3.3583 1.3093 0.4865 29 1 3.7442 1.7168 2.1783 30 1 5.8267 1.5581 0.9085 31 1 5.3736 -0.0567 0.3106 32 1 5.8032 0.6875 3.2398 33 1 7.8030 -0.8149 3.0076 34 1 7.4954 -0.8969 1.2563 35 1 11.0833 2.1401 1.3895 36 1 5.6305 -1.7700 3.5921 37 1 5.2600 -1.9826 1.8635 38 1 3.6151 -0.4098 3.8996 39 1 3.1588 -1.9476 3.1252 40 1 0.4399 0.0000 -2.4985 41 1 1.8929 -0.5140 -3.3885 42 1 1.8932 1.0278 -2.4985 43 1 1.8931 -2.6774 -2.1395 44 1 1.8934 -2.6775 -0.3593 45 1 0.4401 -2.1638 -1.2492 46 1 3.9330 0.3071 -1.2498 47 1 3.9337 -1.2343 -0.3595 48 1 3.9334 -1.2340 -2.1398 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399173348.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:49 Heat of formation + Delta-G solvation = -65.982678 kcal Electronic energy + Delta-G solvation = -24123.626460 eV Core-core repulsion = 20984.357032 eV Total energy + Delta-G solvation = -3139.269428 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.71413 -37.93747 -36.83169 -34.04628 -32.20293 -31.26414 -30.75303 -28.59715 -27.47755 -27.29734 -25.17676 -23.88655 -22.80483 -21.56849 -20.15927 -19.06243 -18.00580 -17.24224 -16.70526 -15.79063 -15.52068 -14.73779 -14.38818 -14.20149 -14.03796 -13.80212 -13.74932 -13.26197 -13.19315 -12.73732 -12.69210 -12.32661 -12.19259 -12.16437 -12.08465 -11.86866 -11.73258 -11.48252 -11.35887 -11.16716 -10.98079 -10.85235 -10.69171 -10.58885 -10.48511 -10.22035 -9.86797 -9.75920 -9.51266 -9.32429 -9.06961 -8.55554 -8.35532 -6.06468 -4.03768 2.75496 3.17632 3.28750 3.36933 3.40466 4.43492 4.46602 4.58752 4.65409 4.91177 5.04983 5.20246 5.26355 5.28252 5.32406 5.33112 5.42799 5.47134 5.55900 5.62945 5.65445 5.67784 5.71867 5.76155 5.83057 5.87232 5.90547 5.92524 6.01684 6.02989 6.07932 6.21529 6.26009 6.30958 6.36446 6.39571 6.43406 6.63078 6.80473 6.84937 6.96803 7.25457 7.41238 7.60500 7.78076 8.34045 8.51430 8.98045 9.56964 11.06748 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.023533 B = 0.004535 C = 0.004279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.554541 B = 6173.374883 C = 6542.258191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.106 4.106 3 H 0.092 0.908 4 C 0.523 3.477 5 O -0.550 6.550 6 N -0.605 5.605 7 C 0.099 3.901 8 C -0.126 4.126 9 C -0.071 4.071 10 C -0.009 4.009 11 C -0.515 4.515 12 H 0.073 0.927 13 C 0.067 3.933 14 N -0.904 5.904 15 Si 0.877 3.123 16 H -0.278 1.278 17 H -0.289 1.289 18 H -0.266 1.266 19 C -0.131 4.131 20 C 0.112 3.888 21 C -0.054 4.054 22 C -0.141 4.141 23 C -0.146 4.146 24 C -0.154 4.154 25 H 0.069 0.931 26 H 0.053 0.947 27 H 0.063 0.937 28 H 0.083 0.917 29 H 0.066 0.934 30 H 0.089 0.911 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.015 0.985 34 H 0.010 0.990 35 H 0.262 0.738 36 H 0.069 0.931 37 H 0.059 0.941 38 H 0.063 0.937 39 H 0.084 0.916 40 H 0.058 0.942 41 H 0.057 0.943 42 H 0.057 0.943 43 H 0.051 0.949 44 H 0.064 0.936 45 H 0.058 0.942 46 H 0.063 0.937 47 H 0.064 0.936 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.536 -4.116 -4.980 18.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.127 4.127 3 H 0.110 0.890 4 C 0.311 3.689 5 O -0.428 6.428 6 N -0.337 5.337 7 C -0.023 4.023 8 C -0.163 4.163 9 C -0.090 4.090 10 C -0.046 4.046 11 C -0.553 4.553 12 H 0.091 0.909 13 C -0.134 4.134 14 N -0.543 5.543 15 Si 0.704 3.296 16 H -0.204 1.204 17 H -0.215 1.215 18 H -0.191 1.191 19 C -0.170 4.170 20 C -0.010 4.010 21 C -0.055 4.055 22 C -0.198 4.198 23 C -0.203 4.203 24 C -0.211 4.211 25 H 0.088 0.912 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.101 0.899 29 H 0.084 0.916 30 H 0.107 0.893 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.033 0.967 34 H 0.028 0.972 35 H 0.072 0.928 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.102 0.898 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.070 0.930 44 H 0.083 0.917 45 H 0.077 0.923 46 H 0.082 0.918 47 H 0.083 0.917 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -17.667 -4.549 -4.770 18.857 hybrid contribution 0.884 -0.645 -0.036 1.095 sum -16.783 -5.194 -4.807 18.214 Atomic orbital electron populations 1.21762 0.92945 1.03141 1.01663 1.21477 0.97727 1.00468 0.93058 0.89012 1.20526 0.79822 0.84188 0.84316 1.90634 1.57226 1.28241 1.66745 1.48206 1.26427 1.26568 1.32544 1.21968 0.94558 0.85865 0.99931 1.21957 0.92433 1.02995 0.98951 1.20993 0.96546 0.94444 0.97012 1.19615 0.91311 0.97623 0.96073 1.21128 0.92959 0.92667 1.48555 0.90866 1.25014 0.97734 0.95938 0.94747 1.69910 1.09115 1.25607 1.49699 0.86827 0.79113 0.84903 0.78716 1.20402 1.21489 1.19089 1.22054 0.93821 0.99308 1.01780 1.21613 0.94546 0.97014 0.87830 1.20412 0.96005 0.95830 0.93210 1.21917 1.01078 1.00226 0.96583 1.21981 1.01195 0.94989 1.02103 1.22201 0.93765 1.02596 1.02568 0.91188 0.92747 0.91829 0.89924 0.91575 0.89295 0.91681 0.91812 0.96670 0.97169 0.92807 0.91238 0.92194 0.91899 0.89778 0.92316 0.92378 0.92437 0.92973 0.91731 0.92316 0.91807 0.91749 0.92413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 8.07 37.16 0.30 -1.09 16 2 C -0.11 -1.19 1.68 -91.78 -0.15 -1.34 16 3 H 0.09 0.93 5.67 -51.92 -0.29 0.63 16 4 C 0.52 7.42 5.02 -10.99 -0.06 7.37 16 5 O -0.55 -9.35 14.38 5.55 0.08 -9.27 16 6 N -0.60 -8.47 2.48 -173.03 -0.43 -8.90 16 7 C 0.10 1.31 5.23 -3.93 -0.02 1.29 16 8 C -0.13 -2.04 4.83 -26.83 -0.13 -2.17 16 9 C -0.07 -1.29 2.10 -90.58 -0.19 -1.48 16 10 C -0.01 -0.20 3.52 -27.88 -0.10 -0.30 16 11 C -0.52 -13.87 8.94 -34.44 -0.31 -14.18 16 12 H 0.07 2.09 7.30 -52.49 -0.38 1.71 16 13 C 0.07 1.88 5.47 -17.82 -0.10 1.79 16 14 N -0.90 -27.18 13.96 55.43 0.77 -26.41 16 15 Si 0.88 21.39 27.47 -169.99 -4.67 16.72 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 17 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 18 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 19 C -0.13 -2.06 5.36 -26.62 -0.14 -2.20 16 20 C 0.11 1.62 6.42 -3.71 -0.02 1.59 16 21 C -0.05 -0.57 0.57 -154.51 -0.09 -0.66 16 22 C -0.14 -1.21 8.12 37.16 0.30 -0.91 16 23 C -0.15 -1.65 7.70 37.15 0.29 -1.36 16 24 C -0.15 -1.81 6.19 37.16 0.23 -1.58 16 25 H 0.07 0.77 6.05 -51.93 -0.31 0.45 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.51 6.70 -51.93 -0.35 0.16 16 28 H 0.08 0.93 4.16 -51.93 -0.22 0.71 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.09 1.62 6.91 -51.93 -0.36 1.26 16 31 H 0.06 1.06 5.59 -51.93 -0.29 0.77 16 32 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.02 0.35 7.20 -51.93 -0.37 -0.02 16 34 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16 35 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 36 H 0.07 1.05 8.14 -51.92 -0.42 0.62 16 37 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.08 1.25 7.03 -51.93 -0.37 0.89 16 40 H 0.06 0.46 6.54 -51.93 -0.34 0.12 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.06 0.89 6.41 -51.93 -0.33 0.56 16 45 H 0.06 0.62 6.33 -51.93 -0.33 0.29 16 46 H 0.06 0.73 6.53 -51.93 -0.34 0.39 16 47 H 0.06 0.88 5.64 -51.93 -0.29 0.59 16 48 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 343.63 15.07 5.18 5.18 Total: -1.00 -30.32 343.63 -7.62 -37.94 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -8.36 Total: -0.02 kcal Atomic # 6 Polarization: -15.05 SS G_CDS: -0.19 Total: -15.24 kcal Atomic # 7 Polarization: -35.65 SS G_CDS: 0.34 Total: -35.30 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: 0.08 Total: -9.27 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.67 Total: 16.72 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.32 -7.62 -37.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399173348.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.045 kcal (2) G-P(sol) polarization free energy of solvation -30.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds