Wall clock time and date at job start Tue Mar 31 2020 06:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.46674 * 2 1 4 4 C 1.52993 * 109.47192 * 239.99576 * 2 1 3 5 5 C 1.50698 * 109.47080 * 65.00259 * 4 2 1 6 6 O 1.21275 * 120.00100 * 359.97438 * 5 4 2 7 7 N 1.34782 * 119.99961 * 179.97438 * 5 4 2 8 8 C 1.46502 * 119.99902 * 179.97438 * 7 5 4 9 9 C 1.53004 * 109.46759 * 185.13705 * 8 7 5 10 10 C 1.50700 * 115.54898 * 59.25531 * 9 8 7 11 11 H 1.07996 * 120.00248 * 273.55650 * 10 9 8 12 12 C 1.37882 * 119.99549 * 93.56139 * 10 9 8 13 13 N 1.31506 * 120.00428 * 4.58012 * 12 10 9 14 14 Si 1.86805 * 119.99533 * 184.58146 * 12 10 9 15 15 H 1.48496 * 109.47146 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.46865 * 119.99953 * 14 12 10 17 17 H 1.48501 * 109.46952 * 239.99840 * 14 12 10 18 18 C 1.53004 * 117.49700 * 273.58333 * 9 8 7 19 19 C 1.53003 * 117.49432 * 204.92618 * 9 8 7 20 20 C 1.53006 * 109.46889 * 119.99337 * 2 1 3 21 21 C 1.52994 * 109.47114 * 275.77137 * 20 2 1 22 22 C 1.52998 * 109.47209 * 55.04907 * 21 20 2 23 23 C 1.52999 * 109.46847 * 175.04643 * 21 20 2 24 24 C 1.53003 * 109.47327 * 295.04462 * 21 20 2 25 25 H 1.09001 * 109.46765 * 58.27630 * 1 2 3 26 26 H 1.08996 * 109.47124 * 178.27858 * 1 2 3 27 27 H 1.09003 * 109.47108 * 298.27445 * 1 2 3 28 28 H 1.09007 * 109.46993 * 184.99702 * 4 2 1 29 29 H 1.08998 * 109.47459 * 304.99900 * 4 2 1 30 30 H 0.96998 * 119.99918 * 359.97438 * 7 5 4 31 31 H 1.08998 * 109.47139 * 305.13225 * 8 7 5 32 32 H 1.09001 * 109.47114 * 65.13659 * 8 7 5 33 33 H 0.97000 * 120.00471 * 185.00203 * 13 12 10 34 34 H 1.08995 * 117.49866 * 0.02562 * 18 9 8 35 35 H 1.08996 * 117.49301 * 145.02368 * 18 9 8 36 36 H 1.09004 * 117.49521 * 214.98103 * 19 9 8 37 37 H 1.08997 * 117.50097 * 359.97324 * 19 9 8 38 38 H 1.08999 * 109.46754 * 155.77276 * 20 2 1 39 39 H 1.08991 * 109.46979 * 35.77487 * 20 2 1 40 40 H 1.08994 * 109.47322 * 50.41712 * 22 21 20 41 41 H 1.09003 * 109.47120 * 170.41617 * 22 21 20 42 42 H 1.09002 * 109.47222 * 290.41312 * 22 21 20 43 43 H 1.08997 * 109.47278 * 60.00412 * 23 21 20 44 44 H 1.09010 * 109.46991 * 179.97438 * 23 21 20 45 45 H 1.08992 * 109.47366 * 299.99769 * 23 21 20 46 46 H 1.09003 * 109.47009 * 60.00596 * 24 21 20 47 47 H 1.09001 * 109.46907 * 179.97438 * 24 21 20 48 48 H 1.08997 * 109.47425 * 299.99972 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.6414 0.0569 -2.4765 6 8 1.0111 1.0868 -2.3633 7 7 1.9855 -0.3916 -3.7000 8 6 1.5974 0.3647 -4.8933 9 6 1.9953 -0.4192 -6.1456 10 6 1.3825 -1.7898 -6.2763 11 1 1.8591 -2.6409 -5.8128 12 6 0.2134 -1.9572 -6.9879 13 7 -0.3186 -0.9387 -7.6276 14 14 -0.6147 -3.6307 -7.0434 15 1 0.1786 -4.6021 -6.2483 16 1 -1.9826 -3.5251 -6.4751 17 1 -0.6981 -4.0953 -8.4514 18 6 3.4171 -0.2273 -6.6771 19 6 2.2296 0.3756 -7.4317 20 6 2.0400 -0.7211 1.2494 21 6 2.0732 0.2573 2.4251 22 6 0.6894 0.8844 2.6060 23 6 2.4644 -0.4915 3.7007 24 6 3.0990 1.3573 2.1445 25 1 -0.3633 0.5404 -0.8741 26 1 -0.3633 -1.0272 -0.0309 27 1 -0.3633 0.4868 0.9051 28 1 3.1264 -0.7995 -1.2055 29 1 1.6055 -1.7199 -1.2950 30 1 2.4899 -1.2151 -3.7905 31 1 0.5187 0.5207 -4.8897 32 1 2.1042 1.3298 -4.8925 33 1 -1.1775 -1.0374 -8.0675 34 1 4.0692 0.4570 -6.1345 35 1 3.9090 -1.0923 -7.1218 36 1 1.9408 -0.0930 -8.3726 37 1 2.0999 1.4569 -7.3859 38 1 3.0446 -1.1015 1.0647 39 1 1.3750 -1.5516 1.4864 40 1 -0.0648 0.0981 2.6359 41 1 0.6647 1.4472 3.5391 42 1 0.4825 1.5548 1.7718 43 1 3.4503 -0.9382 3.5719 44 1 2.4886 0.2057 4.5384 45 1 1.7337 -1.2751 3.9007 46 1 2.8202 1.8907 1.2357 47 1 3.1223 2.0545 2.9820 48 1 4.0848 0.9105 2.0157 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404120288.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:33 Heat of formation + Delta-G solvation = -45.594357 kcal Electronic energy + Delta-G solvation = -22809.089971 eV Core-core repulsion = 19670.704647 eV Total energy + Delta-G solvation = -3138.385324 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.57364 -38.26862 -36.66677 -33.79288 -33.23407 -31.92231 -28.72322 -27.60913 -27.41263 -26.27862 -25.83590 -24.82238 -21.18061 -20.71890 -19.61744 -19.07641 -18.77920 -16.68121 -15.98108 -15.74900 -15.01254 -14.80901 -14.61807 -14.46591 -14.17554 -13.83170 -13.54718 -13.29478 -12.96119 -12.71047 -12.47590 -12.18612 -11.99031 -11.82075 -11.74970 -11.61244 -11.51549 -11.33515 -11.01255 -10.90463 -10.90060 -10.74958 -10.54306 -10.48262 -10.24960 -10.18779 -10.12421 -9.52178 -9.13931 -9.06220 -8.42855 -8.26634 -8.02169 -6.08095 -4.17531 3.24489 3.28446 3.33574 3.35266 3.93241 4.35310 4.63816 4.70064 4.72458 5.07629 5.13392 5.18262 5.22743 5.38622 5.45884 5.49030 5.49183 5.64251 5.65523 5.69251 5.76679 5.81359 5.82239 5.84812 5.92303 5.97675 6.04709 6.07014 6.14648 6.26017 6.31384 6.35829 6.38332 6.49108 6.54101 6.61620 6.70291 6.73884 6.88554 7.15791 7.33121 7.40436 7.63102 7.79751 8.33872 8.35040 8.83992 8.95183 9.49409 10.98805 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.023074 B = 0.003579 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.198205 B = 7821.727532 C = 8380.108688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.074 4.074 3 H 0.081 0.919 4 C -0.138 4.138 5 C 0.503 3.497 6 O -0.556 6.556 7 N -0.705 5.705 8 C 0.163 3.837 9 C 0.018 3.982 10 C -0.495 4.495 11 H 0.059 0.941 12 C 0.073 3.927 13 N -0.875 5.875 14 Si 0.888 3.112 15 H -0.273 1.273 16 H -0.283 1.283 17 H -0.284 1.284 18 C -0.215 4.215 19 C -0.135 4.135 20 C -0.106 4.106 21 C -0.068 4.068 22 C -0.148 4.148 23 C -0.141 4.141 24 C -0.145 4.145 25 H 0.074 0.926 26 H 0.043 0.957 27 H 0.068 0.932 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.400 0.600 31 H 0.065 0.935 32 H 0.035 0.965 33 H 0.260 0.740 34 H 0.062 0.938 35 H 0.077 0.923 36 H 0.092 0.908 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.057 0.943 41 H 0.047 0.953 42 H 0.068 0.932 43 H 0.052 0.948 44 H 0.051 0.949 45 H 0.053 0.947 46 H 0.062 0.938 47 H 0.050 0.950 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.543 0.638 17.690 18.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.093 4.093 3 H 0.099 0.901 4 C -0.178 4.178 5 C 0.289 3.711 6 O -0.436 6.436 7 N -0.353 5.353 8 C 0.040 3.960 9 C 0.017 3.983 10 C -0.533 4.533 11 H 0.077 0.923 12 C -0.131 4.131 13 N -0.511 5.511 14 Si 0.716 3.284 15 H -0.197 1.197 16 H -0.209 1.209 17 H -0.210 1.210 18 C -0.252 4.252 19 C -0.173 4.173 20 C -0.144 4.144 21 C -0.068 4.068 22 C -0.204 4.204 23 C -0.198 4.198 24 C -0.202 4.202 25 H 0.093 0.907 26 H 0.062 0.938 27 H 0.087 0.913 28 H 0.104 0.896 29 H 0.107 0.893 30 H 0.233 0.767 31 H 0.083 0.917 32 H 0.053 0.947 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.095 0.905 36 H 0.111 0.889 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.066 0.934 42 H 0.087 0.913 43 H 0.072 0.928 44 H 0.071 0.929 45 H 0.072 0.928 46 H 0.081 0.919 47 H 0.070 0.930 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.961 1.410 17.565 18.306 hybrid contribution -0.317 -1.363 -0.263 1.424 sum 4.644 0.046 17.302 17.915 Atomic orbital electron populations 1.22446 0.94937 1.01587 1.03932 1.20930 0.96647 0.99939 0.91753 0.90101 1.21789 1.02181 1.00407 0.93459 1.20580 0.79746 0.85893 0.84874 1.90605 1.40829 1.25276 1.86845 1.45995 1.56099 1.27547 1.05700 1.20966 0.99668 0.91896 0.83466 1.19079 0.92543 0.96181 0.90477 1.20362 1.08607 0.91254 1.33078 0.92255 1.24982 0.97411 0.96612 0.94100 1.70016 1.17360 1.30611 1.33161 0.86605 0.79592 0.84454 0.77753 1.19716 1.20944 1.21043 1.23083 0.92351 1.02418 1.07336 1.22436 1.00073 0.96487 0.98316 1.21778 1.01061 0.97597 0.93929 1.20526 0.95688 0.95600 0.95009 1.22202 0.96094 1.00736 1.01417 1.21878 1.01120 0.99959 0.96829 1.21960 0.98427 0.98144 1.01696 0.90673 0.93809 0.91316 0.89632 0.89348 0.76661 0.91687 0.94662 0.92969 0.91905 0.90455 0.88906 0.92028 0.92066 0.91921 0.92374 0.93436 0.91285 0.92841 0.92944 0.92814 0.91943 0.93049 0.92834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.32 8.29 37.16 0.31 -2.01 16 2 C -0.07 -0.92 1.50 -90.62 -0.14 -1.05 16 3 H 0.08 1.10 5.62 -51.93 -0.29 0.81 16 4 C -0.14 -1.84 5.10 -27.89 -0.14 -1.98 16 5 C 0.50 9.10 7.56 -10.98 -0.08 9.01 16 6 O -0.56 -11.83 13.96 5.56 0.08 -11.75 16 7 N -0.70 -13.47 5.39 -60.29 -0.32 -13.80 16 8 C 0.16 3.67 5.53 -4.04 -0.02 3.64 16 9 C 0.02 0.42 1.68 -155.66 -0.26 0.16 16 10 C -0.50 -12.74 8.50 -34.44 -0.29 -13.04 16 11 H 0.06 1.50 7.82 -52.49 -0.41 1.09 16 12 C 0.07 1.93 5.41 -17.82 -0.10 1.84 16 13 N -0.88 -24.29 11.90 55.43 0.66 -23.63 16 14 Si 0.89 20.59 29.54 -169.99 -5.02 15.57 16 15 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 18 C -0.21 -4.52 9.95 -26.69 -0.27 -4.78 16 19 C -0.14 -3.15 8.88 -26.69 -0.24 -3.38 16 20 C -0.11 -1.05 4.02 -26.73 -0.11 -1.16 16 21 C -0.07 -0.62 0.79 -154.51 -0.12 -0.74 16 22 C -0.15 -1.37 6.68 37.16 0.25 -1.13 16 23 C -0.14 -1.12 8.46 37.16 0.31 -0.80 16 24 C -0.15 -1.33 8.26 37.16 0.31 -1.03 16 25 H 0.07 1.26 5.99 -51.93 -0.31 0.95 16 26 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.81 3.90 -51.93 -0.20 0.60 16 28 H 0.09 0.96 8.01 -51.93 -0.42 0.55 16 29 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 30 H 0.40 7.00 8.29 -40.82 -0.34 6.66 16 31 H 0.06 1.66 8.13 -51.93 -0.42 1.24 16 32 H 0.04 0.78 8.11 -51.93 -0.42 0.35 16 33 H 0.26 6.95 8.32 -40.82 -0.34 6.61 16 34 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 35 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 36 H 0.09 2.35 7.63 -51.93 -0.40 1.95 16 37 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 38 H 0.06 0.57 7.83 -51.93 -0.41 0.16 16 39 H 0.06 0.61 7.92 -51.93 -0.41 0.20 16 40 H 0.06 0.53 7.27 -51.93 -0.38 0.15 16 41 H 0.05 0.40 8.12 -51.93 -0.42 -0.02 16 42 H 0.07 0.72 6.04 -51.93 -0.31 0.40 16 43 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.05 0.39 8.14 -51.92 -0.42 -0.03 16 45 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.06 0.64 6.22 -51.93 -0.32 0.32 16 47 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 369.33 15.07 5.57 5.57 Total: -1.00 -28.51 369.33 -8.46 -36.96 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -8.83 Total: 7.54 kcal Atomic # 6 Polarization: -15.87 SS G_CDS: -0.59 Total: -16.45 kcal Atomic # 7 Polarization: -37.77 SS G_CDS: 0.33 Total: -37.43 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.08 Total: -11.75 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -28.51 -8.46 -36.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404120288.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.629 kcal (2) G-P(sol) polarization free energy of solvation -28.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds