Wall clock time and date at job start Tue Mar 31 2020 05:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46503 * 2 1 4 4 C 1.50694 * 109.47380 * 240.00611 * 2 1 3 5 5 H 1.08006 * 119.99392 * 239.99838 * 4 2 1 6 6 C 1.37869 * 120.00302 * 59.99393 * 4 2 1 7 7 N 1.31509 * 120.00279 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00095 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47045 * 59.99849 * 8 6 4 10 10 H 1.48504 * 109.47249 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.46972 * 299.99963 * 8 6 4 12 12 N 1.46498 * 109.47291 * 119.99500 * 2 1 3 13 13 C 1.34769 * 120.00766 * 275.00822 * 12 2 1 14 14 O 1.21291 * 119.99667 * 359.97438 * 13 12 2 15 15 C 1.50696 * 120.00560 * 179.97438 * 13 12 2 16 16 C 1.52997 * 109.47324 * 179.97438 * 15 13 12 17 17 H 1.09002 * 109.47153 * 304.99786 * 16 15 13 18 18 C 1.52992 * 109.47482 * 65.00002 * 16 15 13 19 19 C 1.52997 * 109.47482 * 179.97438 * 18 16 15 20 20 H 1.09002 * 109.47153 * 59.99783 * 19 18 16 21 21 C 1.53000 * 109.47060 * 180.02562 * 19 18 16 22 22 C 1.53002 * 109.46817 * 300.00014 * 19 18 16 23 23 C 1.52997 * 109.47415 * 59.99873 * 22 19 18 24 24 C 1.53006 * 109.46974 * 59.99631 * 23 22 19 25 25 C 1.52999 * 109.47269 * 179.97438 * 23 22 19 26 26 C 1.53002 * 109.46978 * 300.00098 * 23 22 19 27 27 H 1.08995 * 109.47493 * 299.99772 * 1 2 3 28 28 H 1.09002 * 109.47282 * 60.00143 * 1 2 3 29 29 H 1.09000 * 109.46854 * 179.97438 * 1 2 3 30 30 H 0.96999 * 120.00251 * 179.97438 * 7 6 4 31 31 H 0.97006 * 119.99429 * 95.00390 * 12 2 1 32 32 H 1.09006 * 109.47268 * 59.99486 * 15 13 12 33 33 H 1.09003 * 109.47235 * 300.00049 * 15 13 12 34 34 H 1.09002 * 109.47103 * 59.99753 * 18 16 15 35 35 H 1.08998 * 109.46862 * 300.00565 * 18 16 15 36 36 H 1.09004 * 109.46724 * 180.02562 * 21 19 18 37 37 H 1.09001 * 109.47194 * 299.99650 * 21 19 18 38 38 H 1.08992 * 109.47399 * 59.99823 * 21 19 18 39 39 H 1.09000 * 109.46986 * 179.97438 * 22 19 18 40 40 H 1.09002 * 109.47075 * 299.99262 * 22 19 18 41 41 H 1.09000 * 109.46866 * 60.00225 * 24 23 22 42 42 H 1.08996 * 109.47261 * 179.97438 * 24 23 22 43 43 H 1.09001 * 109.47377 * 300.00375 * 24 23 22 44 44 H 1.09002 * 109.46716 * 60.00253 * 25 23 22 45 45 H 1.08996 * 109.46929 * 179.97438 * 25 23 22 46 46 H 1.08996 * 109.47050 * 300.00505 * 25 23 22 47 47 H 1.08996 * 109.46698 * 179.97438 * 26 23 22 48 48 H 1.09002 * 109.46838 * 299.99316 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7102 -1.2305 5 1 2.6533 -1.5884 -1.1313 6 6 1.6993 -0.2392 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3215 -1.1201 -4.0079 9 1 1.8261 -2.5200 -4.0077 10 1 1.8270 -0.4196 -5.2205 11 1 3.8065 -1.1205 -4.0081 12 7 2.0184 -0.6905 1.1962 13 6 2.1470 -0.0183 2.3572 14 8 1.8588 1.1587 2.4115 15 6 2.6488 -0.7287 3.5878 16 6 2.7009 0.2545 4.7588 17 1 3.3029 1.1195 4.4805 18 6 1.2822 0.7108 5.1051 19 6 1.3342 1.6936 6.2766 20 1 1.9364 2.5586 5.9987 21 6 -0.0846 2.1493 6.6233 22 6 1.9597 1.0058 7.4918 23 6 3.3784 0.5496 7.1455 24 6 4.2237 1.7638 6.7554 25 6 4.0041 -0.1376 8.3609 26 6 3.3264 -0.4332 5.9740 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 0.7095 1.1618 -3.4843 31 1 2.2491 -1.6317 1.1526 32 1 3.6480 -1.1213 3.3987 33 1 1.9760 -1.5506 3.8326 34 1 0.6801 -0.1542 5.3835 35 1 0.8364 1.2002 4.2392 36 1 -0.0474 2.8498 7.4576 37 1 -0.5306 2.6391 5.7577 38 1 -0.6864 1.2842 6.9013 39 1 1.9972 1.7061 8.3263 40 1 1.3575 0.1409 7.7697 41 1 4.2608 2.4639 7.5900 42 1 5.2345 1.4388 6.5091 43 1 3.7781 2.2537 5.8896 44 1 3.4020 -1.0026 8.6391 45 1 5.0146 -0.4630 8.1140 46 1 4.0411 0.5628 9.1952 47 1 4.3371 -0.7579 5.7270 48 1 2.7242 -1.2982 6.2519 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408009794.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:26 Heat of formation + Delta-G solvation = -88.539781 kcal Electronic energy + Delta-G solvation = -23235.220628 eV Core-core repulsion = 20094.973051 eV Total energy + Delta-G solvation = -3140.247577 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.08748 -38.49824 -34.88899 -33.97810 -33.21829 -32.30887 -29.24377 -27.46252 -26.96557 -26.47238 -26.15791 -25.22078 -21.73097 -20.44993 -20.14021 -19.24592 -18.49947 -16.94925 -15.68407 -15.37038 -15.13072 -14.96891 -14.71224 -14.39464 -14.03134 -13.72122 -13.56218 -12.90151 -12.75459 -12.44900 -12.42697 -12.21224 -12.08401 -11.87409 -11.71925 -11.68068 -11.51950 -11.25075 -11.06364 -10.92785 -10.82307 -10.78139 -10.64659 -10.57900 -10.30251 -10.21092 -10.07204 -9.91223 -9.81547 -9.02701 -8.78993 -8.50529 -7.82793 -6.10182 -4.19467 3.26370 3.31563 3.32762 3.51259 4.15629 4.40052 4.60662 4.67026 4.74626 4.99331 5.16176 5.21708 5.27126 5.30558 5.41985 5.44629 5.53080 5.55271 5.62514 5.72928 5.73789 5.78662 5.84366 5.86458 5.88288 5.89922 5.98280 6.04280 6.06179 6.13962 6.17189 6.33300 6.38315 6.43997 6.48225 6.73694 6.77072 6.86387 7.00766 7.19111 7.52767 7.61212 7.73212 7.95511 8.18492 8.74143 8.82336 9.22585 9.48758 10.95722 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.031028 B = 0.003468 C = 0.003264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.197463 B = 8072.448961 C = 8577.265580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.264 3.736 3 H 0.047 0.953 4 C -0.534 4.534 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.901 3.099 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.713 5.713 13 C 0.500 3.500 14 O -0.553 6.553 15 C -0.140 4.140 16 C -0.069 4.069 17 H 0.080 0.920 18 C -0.113 4.113 19 C -0.092 4.092 20 H 0.072 0.928 21 C -0.146 4.146 22 C -0.101 4.101 23 C -0.064 4.064 24 C -0.146 4.146 25 C -0.140 4.140 26 C -0.103 4.103 27 H 0.014 0.986 28 H 0.089 0.911 29 H 0.025 0.975 30 H 0.264 0.736 31 H 0.387 0.613 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.050 0.950 35 H 0.087 0.913 36 H 0.048 0.952 37 H 0.056 0.944 38 H 0.050 0.950 39 H 0.056 0.944 40 H 0.058 0.942 41 H 0.049 0.951 42 H 0.051 0.949 43 H 0.066 0.934 44 H 0.052 0.948 45 H 0.053 0.947 46 H 0.051 0.949 47 H 0.059 0.941 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.384 -2.574 19.689 20.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.162 3.838 3 H 0.065 0.935 4 C -0.573 4.573 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.522 5.522 8 Si 0.728 3.272 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.360 5.360 13 C 0.285 3.715 14 O -0.433 6.433 15 C -0.180 4.180 16 C -0.088 4.088 17 H 0.098 0.902 18 C -0.150 4.150 19 C -0.110 4.110 20 H 0.090 0.910 21 C -0.203 4.203 22 C -0.138 4.138 23 C -0.064 4.064 24 C -0.203 4.203 25 C -0.197 4.197 26 C -0.141 4.141 27 H 0.033 0.967 28 H 0.107 0.893 29 H 0.044 0.956 30 H 0.074 0.926 31 H 0.219 0.781 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.069 0.931 35 H 0.105 0.895 36 H 0.067 0.933 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.085 0.915 44 H 0.071 0.929 45 H 0.072 0.928 46 H 0.070 0.930 47 H 0.078 0.922 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.077 -1.600 19.545 19.850 hybrid contribution 0.411 -1.046 -0.937 1.463 sum 3.488 -2.645 18.607 19.115 Atomic orbital electron populations 1.22064 0.98608 0.98975 1.00800 1.18690 0.90921 0.93951 0.80189 0.93484 1.21205 1.32404 1.13187 0.90458 0.92207 1.24887 0.94834 0.94964 0.99036 1.69893 1.35889 1.22445 1.23927 0.86520 0.79166 0.79597 0.81874 1.20175 1.21133 1.20190 1.46557 1.65254 1.13482 1.10749 1.20496 0.78568 0.87632 0.84804 1.90608 1.51392 1.16191 1.85063 1.21767 1.02430 0.99533 0.94273 1.20901 0.97560 0.97841 0.92517 0.90170 1.21756 0.96179 0.98477 0.98623 1.21151 0.96104 0.98653 0.95115 0.91004 1.21811 0.96677 1.00715 1.01120 1.21650 0.94907 0.99822 0.97433 1.20511 0.95324 0.95609 0.94967 1.21991 0.99358 0.97353 1.01644 1.21861 1.00417 1.00126 0.97335 1.21669 1.00477 0.97594 0.94330 0.96696 0.89272 0.95613 0.92557 0.78090 0.89750 0.89837 0.93112 0.89468 0.93253 0.92524 0.93077 0.92553 0.92296 0.93162 0.92966 0.91520 0.92895 0.92825 0.92951 0.92197 0.92159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.68 9.26 37.16 0.34 -3.33 16 2 C 0.26 6.80 2.56 -69.09 -0.18 6.63 16 3 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 4 C -0.53 -14.31 8.73 -34.45 -0.30 -14.61 16 5 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -25.16 11.32 55.43 0.63 -24.53 16 8 Si 0.90 20.78 29.54 -169.99 -5.02 15.75 16 9 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 10 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 12 N -0.71 -14.90 5.07 -54.94 -0.28 -15.18 16 13 C 0.50 9.78 7.51 -10.99 -0.08 9.70 16 14 O -0.55 -12.80 13.63 5.55 0.08 -12.73 16 15 C -0.14 -1.97 5.17 -27.89 -0.14 -2.11 16 16 C -0.07 -0.92 1.56 -90.62 -0.14 -1.06 16 17 H 0.08 1.21 6.24 -51.93 -0.32 0.88 16 18 C -0.11 -1.56 4.22 -26.74 -0.11 -1.68 16 19 C -0.09 -1.09 2.45 -90.62 -0.22 -1.31 16 20 H 0.07 0.91 6.43 -51.93 -0.33 0.58 16 21 C -0.15 -1.62 9.19 37.16 0.34 -1.27 16 22 C -0.10 -1.01 4.01 -26.73 -0.11 -1.12 16 23 C -0.06 -0.63 0.77 -154.51 -0.12 -0.74 16 24 C -0.15 -1.48 7.78 37.16 0.29 -1.19 16 25 C -0.14 -1.17 8.47 37.16 0.31 -0.86 16 26 C -0.10 -1.09 4.01 -26.73 -0.11 -1.20 16 27 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 29 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 31 H 0.39 7.03 8.54 -40.82 -0.35 6.68 16 32 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.09 1.52 5.95 -51.93 -0.31 1.21 16 36 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.07 0.77 4.81 -51.93 -0.25 0.52 16 44 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 361.96 15.07 5.45 5.45 Total: -1.00 -29.47 361.96 -8.46 -37.93 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -9.00 Total: 5.77 kcal Atomic # 6 Polarization: -12.15 SS G_CDS: -0.32 Total: -12.47 kcal Atomic # 7 Polarization: -40.06 SS G_CDS: 0.35 Total: -39.71 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: 0.08 Total: -12.73 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -29.47 -8.46 -37.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408009794.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.608 kcal (2) G-P(sol) polarization free energy of solvation -29.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds